Wall clock time and date at job start Tue Mar 31 2020 05:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99570 * 2 1 4 4 C 1.53003 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47566 * 65.41274 * 4 3 2 6 6 C 1.46500 * 119.99802 * 81.88500 * 5 4 3 7 7 C 1.50699 * 109.47146 * 85.00360 * 6 5 4 8 8 H 1.07995 * 119.99771 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00009 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99611 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99936 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46798 * 90.00437 * 11 9 7 13 13 H 1.48500 * 109.46834 * 210.00205 * 11 9 7 14 14 H 1.48495 * 109.47247 * 330.00214 * 11 9 7 15 15 S 1.65595 * 120.00282 * 261.88838 * 5 4 3 16 16 O 1.42095 * 106.40223 * 16.09580 * 15 5 4 17 17 O 1.42097 * 106.40443 * 149.01444 * 15 5 4 18 18 N 1.65602 * 107.21798 * 262.55503 * 15 5 4 19 19 C 1.47060 * 136.05880 * 274.68391 * 18 15 5 20 20 C 1.53755 * 87.88959 * 152.96231 * 19 18 15 21 21 C 1.47068 * 136.05608 * 95.05979 * 18 15 5 22 22 H 1.08997 * 113.47086 * 92.30494 * 21 18 15 23 23 C 1.53001 * 113.46394 * 321.91963 * 21 18 15 24 24 C 1.53006 * 109.46832 * 177.72161 * 23 21 18 25 25 C 1.52996 * 109.47277 * 297.71920 * 23 21 18 26 26 H 1.09001 * 109.47466 * 300.00275 * 1 2 3 27 27 H 1.08999 * 109.47285 * 59.99860 * 1 2 3 28 28 H 1.08994 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47295 * 60.00501 * 3 2 1 30 30 H 1.08999 * 109.47172 * 299.99300 * 3 2 1 31 31 H 1.08996 * 109.47082 * 185.41819 * 4 3 2 32 32 H 1.08997 * 109.46968 * 305.41314 * 4 3 2 33 33 H 1.09002 * 109.47229 * 205.00039 * 6 5 4 34 34 H 1.09004 * 109.47067 * 325.00194 * 6 5 4 35 35 H 0.97006 * 119.99711 * 179.97438 * 10 9 7 36 36 H 1.08998 * 113.47281 * 267.69673 * 19 18 15 37 37 H 1.09007 * 113.46419 * 38.13594 * 19 18 15 38 38 H 1.09000 * 114.39826 * 272.67847 * 20 19 18 39 39 H 1.08997 * 114.26705 * 139.78860 * 20 19 18 40 40 H 1.08995 * 109.47208 * 57.72170 * 23 21 18 41 41 H 1.08992 * 109.47026 * 180.02562 * 24 23 21 42 42 H 1.09006 * 109.46988 * 299.99894 * 24 23 21 43 43 H 1.08995 * 109.47217 * 60.00014 * 24 23 21 44 44 H 1.08992 * 109.47529 * 51.95252 * 25 23 21 45 45 H 1.09003 * 109.46804 * 171.95165 * 25 23 21 46 46 H 1.08996 * 109.47162 * 291.94788 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9765 0.5735 -1.2569 6 6 4.1166 1.3952 -2.4616 7 6 5.4753 2.0471 -2.4698 8 1 6.1651 1.8677 -1.6584 9 6 5.8372 2.8735 -3.5125 10 7 7.0227 3.4428 -3.5192 11 14 4.6436 3.1844 -4.9154 12 1 3.8032 4.3667 -4.5974 13 1 5.4042 3.4394 -6.1650 14 1 3.7746 1.9943 -5.0989 15 16 4.3164 -1.0461 -1.3151 16 8 3.7392 -1.6194 -0.1501 17 8 3.9988 -1.4757 -2.6318 18 7 5.9565 -1.2089 -1.1530 19 6 7.1184 -1.1716 -2.0537 20 6 7.9629 -0.7145 -0.8528 21 6 6.8913 -1.4608 -0.0460 22 1 7.1158 -2.5173 0.1007 23 6 6.5019 -0.7529 1.2533 24 6 7.4993 -1.1214 2.3535 25 6 6.5204 0.7612 1.0344 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.9784 2.1759 0.0964 32 1 3.8509 0.5623 0.8366 33 1 4.0104 0.7657 -3.3451 34 1 3.3444 2.1645 -2.4686 35 1 7.2774 4.0239 -4.2530 36 1 7.4028 -2.1519 -2.4362 37 1 7.0351 -0.4201 -2.8388 38 1 7.9723 0.3637 -0.6934 39 1 8.9538 -1.1659 -0.8043 40 1 5.5009 -1.0647 1.5511 41 1 7.2217 -0.6174 3.2792 42 1 7.4861 -2.2001 2.5094 43 1 8.5004 -0.8095 2.0557 44 1 5.9204 1.0092 0.1590 45 1 6.1074 1.2601 1.9112 46 1 7.5467 1.0931 0.8773 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451939511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:37 Heat of formation + Delta-G solvation = -104.902054 kcal Electronic energy + Delta-G solvation = -28418.846870 eV Core-core repulsion = 24664.251723 eV Total energy + Delta-G solvation = -3754.595147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73976 -39.12784 -38.20134 -37.13601 -36.79474 -35.11613 -34.47999 -31.29804 -29.35912 -28.82222 -28.01446 -27.03779 -26.51418 -24.43772 -23.09278 -22.52507 -20.98390 -19.40466 -18.98873 -18.78283 -17.92706 -17.64571 -17.07173 -16.81387 -16.48858 -16.32081 -15.86548 -15.74366 -15.12318 -14.78915 -14.59602 -14.41788 -14.19031 -13.96782 -13.65722 -13.50916 -13.41246 -13.22358 -13.13090 -13.09779 -12.97926 -12.80037 -12.72335 -12.46763 -12.33454 -12.24521 -12.00751 -11.87590 -11.80859 -11.70882 -11.58772 -11.34464 -10.95141 -10.71004 -10.57347 -9.91205 -9.71277 -8.22352 -6.23524 -0.29071 1.33368 1.39784 1.48276 2.01855 2.37188 2.61644 2.95045 3.11640 3.28907 3.66163 3.89320 4.03204 4.07324 4.15472 4.19127 4.22535 4.37165 4.48905 4.51033 4.53151 4.56245 4.67756 4.74561 4.80455 4.83182 4.87308 4.91433 4.94631 4.97621 5.01888 5.16701 5.17576 5.20412 5.33726 5.35556 5.48322 5.52207 5.55728 5.59502 5.84977 5.89186 6.30539 6.40239 6.84752 7.39593 8.91220 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009839 B = 0.008095 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.008401 B = 3458.269974 C = 5011.350516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.412 6.412 3 C 0.037 3.963 4 C 0.128 3.872 5 N -0.981 5.981 6 C 0.223 3.777 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.033 3.967 10 N -0.927 5.927 11 Si 0.908 3.092 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.264 1.264 15 S 2.816 3.184 16 O -0.984 6.984 17 O -1.029 7.029 18 N -1.050 6.050 19 C 0.119 3.881 20 C -0.133 4.133 21 C 0.160 3.840 22 H 0.108 0.892 23 C -0.115 4.115 24 C -0.131 4.131 25 C -0.161 4.161 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.021 0.979 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -6.038 10.856 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.332 6.332 3 C -0.041 4.041 4 C 0.003 3.997 5 N -0.820 5.820 6 C 0.098 3.902 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.167 4.167 10 N -0.567 5.567 11 Si 0.734 3.266 12 H -0.188 1.188 13 H -0.210 1.210 14 H -0.189 1.189 15 S 2.828 3.172 16 O -0.968 6.968 17 O -1.014 7.014 18 N -0.892 5.892 19 C -0.006 4.006 20 C -0.172 4.172 21 C 0.055 3.945 22 H 0.126 0.874 23 C -0.135 4.135 24 C -0.189 4.189 25 C -0.218 4.218 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.779 -6.767 10.601 12.880 hybrid contribution -0.608 1.005 -1.264 1.726 sum -3.387 -5.762 9.337 11.482 Atomic orbital electron populations 1.22917 0.80143 1.03319 1.00919 1.88007 1.21084 1.28522 1.95551 1.23187 0.94295 0.84915 1.01669 1.21440 0.92500 1.00866 0.84929 1.57387 1.80603 1.27261 1.16741 1.19297 0.97023 0.91223 0.82650 1.21651 0.99767 1.27058 1.07823 0.90760 1.25407 0.96107 0.95520 0.99668 1.69975 1.21018 1.32424 1.33325 0.86302 0.80413 0.79501 0.80392 1.18757 1.21042 1.18854 1.00512 0.71821 0.73134 0.71751 1.93524 1.76189 1.76756 1.50338 1.93470 1.83794 1.81694 1.42442 1.60425 1.21319 1.87040 1.20383 1.22547 0.82407 1.01228 0.94463 1.23612 0.97890 1.01669 0.94047 1.22461 0.85810 0.99847 0.86362 0.87436 1.21455 1.00725 0.95970 0.95315 1.21663 0.98518 1.01865 0.96868 1.22168 1.02718 0.94944 1.01936 0.91993 0.93888 0.89455 0.89477 0.93111 0.87899 0.89421 0.96081 0.94191 0.92631 0.88575 0.92516 0.89438 0.87240 0.91715 0.91875 0.91676 0.91382 0.92570 0.92144 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -14.14 9.64 -139.83 -1.35 -15.49 16 3 C 0.04 1.13 6.26 71.98 0.45 1.58 16 4 C 0.13 4.34 4.05 86.38 0.35 4.69 16 5 N -0.98 -40.29 2.06 -519.85 -1.07 -41.36 16 6 C 0.22 10.33 4.50 85.63 0.39 10.72 16 7 C -0.52 -26.62 9.94 25.60 0.25 -26.37 16 8 H 0.07 3.94 6.64 -2.91 -0.02 3.93 16 9 C 0.03 1.75 5.47 84.66 0.46 2.21 16 10 N -0.93 -52.46 13.96 21.45 0.30 -52.16 16 11 Si 0.91 42.02 27.47 68.60 1.88 43.91 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 15 S 2.82 120.58 6.52 -56.49 -0.37 120.21 16 16 O -0.98 -42.38 14.91 -122.96 -1.83 -44.21 16 17 O -1.03 -51.83 16.87 -128.00 -2.16 -53.99 16 18 N -1.05 -37.93 3.57 -526.47 -1.88 -39.81 16 19 C 0.12 3.95 8.74 83.26 0.73 4.67 16 20 C -0.13 -3.61 7.67 31.02 0.24 -3.37 16 21 C 0.16 4.43 3.86 41.79 0.16 4.59 16 22 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 23 C -0.12 -3.03 3.05 -10.79 -0.03 -3.06 16 24 C -0.13 -2.50 9.19 71.98 0.66 -1.84 16 25 C -0.16 -4.63 7.16 71.98 0.52 -4.12 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.55 7.80 -2.39 -0.02 1.53 16 31 H 0.10 3.30 8.07 -2.39 -0.02 3.28 16 32 H 0.09 2.87 6.55 -2.39 -0.02 2.85 16 33 H 0.02 1.08 6.09 -2.39 -0.01 1.07 16 34 H 0.04 1.76 7.20 -2.38 -0.02 1.74 16 35 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 38 H 0.09 2.79 5.71 -2.39 -0.01 2.78 16 39 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 1.94 7.25 -2.39 -0.02 1.92 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.94 3.46 -2.39 -0.01 1.93 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 46 H 0.06 1.74 6.67 -2.39 -0.02 1.73 16 Total: -1.00 -69.30 368.09 -0.15 -69.45 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.90 Total: 21.91 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.42 Total: -8.46 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -2.65 Total: -133.32 kcal Atomic # 8 Polarization: -108.34 SS G_CDS: -5.34 Total: -113.68 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Atomic # 16 Polarization: 120.58 SS G_CDS: -0.37 Total: 120.21 kcal Total: -69.30 -0.15 -69.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451939511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.455 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds