Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 H 1.08999 * 109.70840 * 307.25282 * 3 2 1 5 5 C 1.53292 * 109.67763 * 67.78853 * 3 2 1 6 6 O 1.42960 * 109.22122 * 172.02683 * 5 3 2 7 7 C 1.42963 * 114.16934 * 297.41992 * 6 5 3 8 8 C 1.52994 * 109.51770 * 182.50547 * 7 6 5 9 9 C 1.53004 * 109.51092 * 302.65699 * 7 6 5 10 10 C 1.53295 * 109.22012 * 62.57615 * 7 6 5 11 11 N 1.47144 * 108.38900 * 307.70223 * 10 7 6 12 12 S 1.65601 * 120.98414 * 230.51510 * 11 10 7 13 13 O 1.42101 * 106.39863 * 13.10092 * 12 11 10 14 14 O 1.42095 * 106.40250 * 146.02428 * 12 11 10 15 15 N 1.65608 * 107.21514 * 259.56260 * 12 11 10 16 16 C 1.46499 * 119.99868 * 263.36374 * 15 12 11 17 17 C 1.46495 * 119.99828 * 83.36841 * 15 12 11 18 18 C 1.50702 * 109.47395 * 94.99805 * 17 15 12 19 19 H 1.08000 * 119.99568 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99956 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99980 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00279 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47667 * 89.99772 * 22 20 18 24 24 H 1.48499 * 109.47441 * 210.00179 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99690 * 22 20 18 26 26 H 1.08998 * 109.47197 * 182.57498 * 1 2 3 27 27 H 1.08996 * 109.47283 * 302.57090 * 1 2 3 28 28 H 1.09003 * 109.47365 * 62.57552 * 1 2 3 29 29 H 1.09007 * 109.47176 * 240.00873 * 2 1 3 30 30 H 1.08994 * 109.47541 * 120.00235 * 2 1 3 31 31 H 1.09000 * 109.51605 * 52.10596 * 5 3 2 32 32 H 1.09001 * 109.55552 * 291.97186 * 5 3 2 33 33 H 1.09002 * 109.47155 * 59.99549 * 8 7 6 34 34 H 1.08998 * 109.47661 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47187 * 300.00465 * 8 7 6 36 36 H 1.09005 * 109.47153 * 59.99620 * 9 7 6 37 37 H 1.08993 * 109.47054 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.47495 * 300.00171 * 9 7 6 39 39 H 1.09001 * 109.68049 * 187.97262 * 10 7 6 40 40 H 1.08999 * 109.70892 * 67.44774 * 10 7 6 41 41 H 1.08997 * 109.46986 * 84.85471 * 16 15 12 42 42 H 1.08999 * 109.46774 * 204.85136 * 16 15 12 43 43 H 1.09002 * 109.46846 * 324.85175 * 16 15 12 44 44 H 1.09000 * 109.46953 * 214.99895 * 17 15 12 45 45 H 1.09002 * 109.47505 * 334.99689 * 17 15 12 46 46 H 0.97003 * 120.00428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5769 1.9962 -0.8168 5 6 1.6976 2.1111 1.3363 6 8 2.3359 3.3887 1.4006 7 6 3.7640 3.3319 1.3653 8 6 4.3353 4.7445 1.5026 9 6 4.2694 2.4610 2.5174 10 6 4.2122 2.7257 0.0305 11 7 3.5025 1.4512 -0.1620 12 16 4.3253 0.0675 -0.5501 13 8 5.7015 0.3433 -0.3279 14 8 3.6347 -1.0009 0.0829 15 7 4.1522 -0.1647 -2.1807 16 6 3.1146 -1.0671 -2.6860 17 6 5.0368 0.5321 -3.1177 18 6 6.1941 -0.3638 -3.4770 19 1 6.2639 -1.3532 -3.0496 20 6 7.1637 0.0796 -4.3512 21 7 8.1734 -0.7024 -4.6651 22 14 7.0433 1.7911 -5.0897 23 1 7.7450 2.7603 -4.2102 24 1 7.6743 1.7958 -6.4340 25 1 5.6148 2.1780 -5.2122 26 1 -0.3633 -1.0266 0.0462 27 1 -0.3633 0.5532 0.8660 28 1 -0.3634 0.4733 -0.9122 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0501 1.4863 2.1569 32 1 0.6180 2.2393 1.4141 33 1 4.0125 5.1765 2.4499 34 1 5.4240 4.7004 1.4761 35 1 3.9762 5.3631 0.6802 36 1 3.8635 1.4543 2.4170 37 1 5.3581 2.4178 2.4896 38 1 3.9465 2.8900 3.4660 39 1 5.2874 2.5479 0.0507 40 1 3.9683 3.4084 -0.7835 41 1 2.1712 -0.5272 -2.7661 42 1 3.4044 -1.4400 -3.6683 43 1 2.9964 -1.9054 -1.9994 44 1 4.4813 0.7876 -4.0201 45 1 5.4134 1.4432 -2.6528 46 1 8.8558 -0.3904 -5.2798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593629702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = -102.573283 kcal Electronic energy + Delta-G solvation = -28295.192923 eV Core-core repulsion = 24540.698759 eV Total energy + Delta-G solvation = -3754.494164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.07836 -37.28501 -35.84638 -35.50871 -35.25053 -34.12067 -32.42612 -32.01252 -28.47511 -28.18080 -27.29128 -25.91692 -25.26094 -23.80239 -21.92894 -21.57557 -19.78039 -18.46222 -17.27252 -17.11614 -16.83322 -16.59775 -15.83870 -15.33338 -15.06801 -14.91412 -14.60927 -14.21397 -13.98316 -13.65023 -13.36702 -13.18329 -12.95152 -12.66379 -12.59132 -12.46119 -12.39811 -12.16655 -12.02229 -11.95419 -11.65968 -11.55064 -11.43410 -11.31177 -11.30087 -11.22891 -10.89135 -10.77345 -10.57119 -10.44009 -10.26007 -10.18530 -9.88555 -9.58059 -8.71695 -8.62231 -8.14824 -6.11003 -4.10493 1.03676 3.22407 3.26381 3.29302 3.32777 3.61125 3.92851 4.34971 4.53077 4.59885 4.69495 4.83120 4.85378 4.96732 5.03423 5.17665 5.24781 5.26726 5.38518 5.46255 5.49371 5.53385 5.58306 5.62060 5.67745 5.69808 5.77769 5.84303 5.86562 5.95348 6.00217 6.04992 6.11079 6.18030 6.25394 6.37086 6.44584 6.60831 6.70136 7.03624 7.13027 7.34357 7.54129 8.46051 8.94080 9.47666 11.02577 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005667 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.306528 B = 4939.886486 C = 5872.417944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.124 3.876 4 H 0.079 0.921 5 C 0.054 3.946 6 O -0.371 6.371 7 C 0.103 3.897 8 C -0.137 4.137 9 C -0.181 4.181 10 C 0.094 3.906 11 N -1.010 6.010 12 S 2.779 3.221 13 O -0.960 6.960 14 O -0.988 6.988 15 N -0.991 5.991 16 C 0.094 3.906 17 C 0.230 3.770 18 C -0.531 4.531 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.870 3.130 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.265 1.265 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.024 0.976 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 8.010 10.971 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.017 3.983 4 H 0.097 0.903 5 C -0.024 4.024 6 O -0.290 6.290 7 C 0.062 3.938 8 C -0.194 4.194 9 C -0.238 4.238 10 C -0.032 4.032 11 N -0.848 5.848 12 S 2.789 3.211 13 O -0.943 6.943 14 O -0.972 6.972 15 N -0.832 5.832 16 C -0.053 4.053 17 C 0.106 3.894 18 C -0.570 4.570 19 H 0.096 0.904 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.697 3.303 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.190 1.190 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.298 7.602 11.440 19.827 hybrid contribution 0.046 0.815 -0.926 1.234 sum -14.252 8.416 10.514 19.608 Atomic orbital electron populations 1.21777 0.95018 1.02174 1.01637 1.22548 0.96592 0.93970 1.06486 1.21679 0.79941 0.97899 0.98755 0.90332 1.23014 0.97842 0.85504 0.96082 1.87949 1.18320 1.28334 1.94403 1.21805 0.81495 0.96444 0.94082 1.21732 1.00934 0.93755 1.03025 1.22423 1.02570 1.00457 0.98370 1.22150 0.98364 0.85298 0.97351 1.58594 1.15452 1.25221 1.85560 1.02156 0.72893 0.72856 0.73197 1.93612 1.31168 1.84678 1.84873 1.93590 1.74783 1.53956 1.74831 1.57445 1.44270 1.56680 1.24810 1.21442 0.88997 0.92880 1.01945 1.19408 0.89222 0.92118 0.88647 1.21365 1.05735 1.02787 1.27117 0.90421 1.24868 0.94902 0.97176 0.95998 1.69893 1.11867 1.36502 1.34958 0.86947 0.78882 0.85344 0.79132 1.19771 1.20857 1.18957 0.92015 0.92679 0.92694 0.90047 0.88044 0.92207 0.88054 0.91543 0.90569 0.91544 0.92095 0.90827 0.91604 0.87555 0.90769 0.94007 0.89912 0.91334 0.94905 0.95837 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.77 37.15 0.36 -1.02 16 2 C -0.16 -1.99 3.76 -26.73 -0.10 -2.09 16 3 C 0.12 1.58 3.14 -67.42 -0.21 1.36 16 4 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.05 0.61 5.51 37.31 0.21 0.81 16 6 O -0.37 -4.67 10.23 -35.23 -0.36 -5.03 16 7 C 0.10 1.26 1.11 -90.47 -0.10 1.16 16 8 C -0.14 -1.35 8.85 37.15 0.33 -1.03 16 9 C -0.18 -2.17 8.09 37.16 0.30 -1.87 16 10 C 0.09 1.35 5.40 -3.54 -0.02 1.33 16 11 N -1.01 -15.59 2.91 -106.04 -0.31 -15.89 16 12 S 2.78 54.23 5.61 -107.50 -0.60 53.63 16 13 O -0.96 -22.49 15.78 -57.17 -0.90 -23.39 16 14 O -0.99 -19.12 12.19 -57.17 -0.70 -19.82 16 15 N -0.99 -20.07 3.23 -123.06 -0.40 -20.46 16 16 C 0.09 1.56 9.04 59.85 0.54 2.10 16 17 C 0.23 5.38 4.12 -5.20 -0.02 5.36 16 18 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 22 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.43 6.76 -51.93 -0.35 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.13 3.24 -51.92 -0.17 0.97 16 30 H 0.10 1.42 6.57 -51.93 -0.34 1.08 16 31 H 0.06 0.68 6.22 -51.93 -0.32 0.36 16 32 H 0.10 0.91 7.02 -51.93 -0.36 0.54 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.80 6.11 -51.93 -0.32 0.48 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 1.64 6.77 -51.93 -0.35 1.29 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.57 7.28 -51.93 -0.38 0.19 16 42 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 43 H 0.07 1.10 6.92 -51.93 -0.36 0.74 16 44 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 45 H 0.02 0.55 7.22 -51.93 -0.37 0.18 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -33.63 355.28 -8.48 -42.11 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.51 Total: 1.21 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 0.85 Total: -7.29 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.07 Total: -62.99 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.96 Total: -48.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 54.23 SS G_CDS: -0.60 Total: 53.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.63 -8.48 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.466 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds