Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 H 1.08999 * 109.70840 * 307.25282 * 3 2 1 5 5 C 1.53292 * 109.67763 * 67.78853 * 3 2 1 6 6 O 1.42960 * 109.22122 * 172.02683 * 5 3 2 7 7 C 1.42963 * 114.16934 * 297.41992 * 6 5 3 8 8 C 1.52994 * 109.51770 * 182.50547 * 7 6 5 9 9 C 1.53004 * 109.51092 * 302.65699 * 7 6 5 10 10 C 1.53295 * 109.22012 * 62.57615 * 7 6 5 11 11 N 1.47144 * 108.38900 * 307.70223 * 10 7 6 12 12 S 1.65601 * 120.98414 * 230.51510 * 11 10 7 13 13 O 1.42101 * 106.39863 * 13.10092 * 12 11 10 14 14 O 1.42095 * 106.40250 * 146.02428 * 12 11 10 15 15 N 1.65608 * 107.21514 * 259.56260 * 12 11 10 16 16 C 1.46499 * 119.99868 * 263.36374 * 15 12 11 17 17 C 1.46495 * 119.99828 * 83.36841 * 15 12 11 18 18 C 1.50702 * 109.47395 * 94.99805 * 17 15 12 19 19 H 1.08000 * 119.99568 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99956 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99980 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00279 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47667 * 89.99772 * 22 20 18 24 24 H 1.48499 * 109.47441 * 210.00179 * 22 20 18 25 25 H 1.48504 * 109.47113 * 329.99690 * 22 20 18 26 26 H 1.08998 * 109.47197 * 182.57498 * 1 2 3 27 27 H 1.08996 * 109.47283 * 302.57090 * 1 2 3 28 28 H 1.09003 * 109.47365 * 62.57552 * 1 2 3 29 29 H 1.09007 * 109.47176 * 240.00873 * 2 1 3 30 30 H 1.08994 * 109.47541 * 120.00235 * 2 1 3 31 31 H 1.09000 * 109.51605 * 52.10596 * 5 3 2 32 32 H 1.09001 * 109.55552 * 291.97186 * 5 3 2 33 33 H 1.09002 * 109.47155 * 59.99549 * 8 7 6 34 34 H 1.08998 * 109.47661 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47187 * 300.00465 * 8 7 6 36 36 H 1.09005 * 109.47153 * 59.99620 * 9 7 6 37 37 H 1.08993 * 109.47054 * 179.97438 * 9 7 6 38 38 H 1.09001 * 109.47495 * 300.00171 * 9 7 6 39 39 H 1.09001 * 109.68049 * 187.97262 * 10 7 6 40 40 H 1.08999 * 109.70892 * 67.44774 * 10 7 6 41 41 H 1.08997 * 109.46986 * 84.85471 * 16 15 12 42 42 H 1.08999 * 109.46774 * 204.85136 * 16 15 12 43 43 H 1.09002 * 109.46846 * 324.85175 * 16 15 12 44 44 H 1.09000 * 109.46953 * 214.99895 * 17 15 12 45 45 H 1.09002 * 109.47505 * 334.99689 * 17 15 12 46 46 H 0.97003 * 120.00428 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5769 1.9962 -0.8168 5 6 1.6976 2.1111 1.3363 6 8 2.3359 3.3887 1.4006 7 6 3.7640 3.3319 1.3653 8 6 4.3353 4.7445 1.5026 9 6 4.2694 2.4610 2.5174 10 6 4.2122 2.7257 0.0305 11 7 3.5025 1.4512 -0.1620 12 16 4.3253 0.0675 -0.5501 13 8 5.7015 0.3433 -0.3279 14 8 3.6347 -1.0009 0.0829 15 7 4.1522 -0.1647 -2.1807 16 6 3.1146 -1.0671 -2.6860 17 6 5.0368 0.5321 -3.1177 18 6 6.1941 -0.3638 -3.4770 19 1 6.2639 -1.3532 -3.0496 20 6 7.1637 0.0796 -4.3512 21 7 8.1734 -0.7024 -4.6651 22 14 7.0433 1.7911 -5.0897 23 1 7.7450 2.7603 -4.2102 24 1 7.6743 1.7958 -6.4340 25 1 5.6148 2.1780 -5.2122 26 1 -0.3633 -1.0266 0.0462 27 1 -0.3633 0.5532 0.8660 28 1 -0.3634 0.4733 -0.9122 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.0501 1.4863 2.1569 32 1 0.6180 2.2393 1.4141 33 1 4.0125 5.1765 2.4499 34 1 5.4240 4.7004 1.4761 35 1 3.9762 5.3631 0.6802 36 1 3.8635 1.4543 2.4170 37 1 5.3581 2.4178 2.4896 38 1 3.9465 2.8900 3.4660 39 1 5.2874 2.5479 0.0507 40 1 3.9683 3.4084 -0.7835 41 1 2.1712 -0.5272 -2.7661 42 1 3.4044 -1.4400 -3.6683 43 1 2.9964 -1.9054 -1.9994 44 1 4.4813 0.7876 -4.0201 45 1 5.4134 1.4432 -2.6528 46 1 8.8558 -0.3904 -5.2798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593629702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = -127.676250 kcal Electronic energy + Delta-G solvation = -28296.281469 eV Core-core repulsion = 24540.698759 eV Total energy + Delta-G solvation = -3755.582710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06696 -38.75971 -37.43549 -36.95907 -36.62985 -35.13334 -34.54257 -32.96419 -30.34953 -29.10320 -28.12934 -27.01924 -26.86502 -24.74583 -23.84891 -22.58155 -20.81217 -19.87016 -19.15235 -18.71624 -18.09744 -17.93368 -17.12049 -16.60991 -16.31205 -16.11279 -15.89574 -15.56781 -15.32859 -14.90075 -14.65241 -14.52314 -14.33961 -14.09962 -13.94459 -13.63608 -13.41040 -13.30058 -13.19773 -13.10418 -13.04060 -13.01896 -12.89288 -12.62978 -12.43165 -12.31547 -12.23129 -12.20322 -12.07908 -11.92527 -11.73694 -11.46879 -11.16767 -10.98765 -10.80985 -9.89809 -9.72028 -8.31354 -6.37770 -0.46723 1.34654 1.38206 1.47069 1.88641 2.32937 2.45099 2.71805 3.01786 3.28123 3.49363 3.64306 3.84937 3.87970 3.96919 3.99576 4.10668 4.29873 4.41272 4.44101 4.56460 4.58862 4.59711 4.64772 4.68743 4.75199 4.76720 4.80493 4.85703 4.89207 4.96751 4.98385 5.05539 5.19203 5.20641 5.26095 5.30665 5.36334 5.43471 5.45532 5.56299 5.77218 6.20397 6.27645 6.64953 7.25141 8.86370 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005667 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.306528 B = 4939.886486 C = 5872.417944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 C 0.120 3.880 4 H 0.095 0.905 5 C 0.053 3.947 6 O -0.373 6.373 7 C 0.104 3.896 8 C -0.134 4.134 9 C -0.183 4.183 10 C 0.085 3.915 11 N -1.002 6.002 12 S 2.786 3.214 13 O -1.009 7.009 14 O -0.994 6.994 15 N -1.001 6.001 16 C 0.088 3.912 17 C 0.238 3.762 18 C -0.543 4.543 19 H 0.025 0.975 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.230 1.230 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.777 10.996 11.068 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.014 3.986 4 H 0.113 0.887 5 C -0.025 4.025 6 O -0.292 6.292 7 C 0.063 3.937 8 C -0.192 4.192 9 C -0.240 4.240 10 C -0.040 4.040 11 N -0.843 5.843 12 S 2.798 3.202 13 O -0.992 6.992 14 O -0.978 6.978 15 N -0.841 5.841 16 C -0.057 4.057 17 C 0.113 3.887 18 C -0.582 4.582 19 H 0.044 0.956 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.764 3.236 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.152 1.152 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.234 10.560 11.549 23.279 hybrid contribution 0.915 -0.240 -0.858 1.277 sum -16.319 10.320 10.692 22.071 Atomic orbital electron populations 1.21756 0.92134 1.02956 1.03195 1.22505 0.99108 0.93486 1.04764 1.21992 0.77852 0.98375 1.00349 0.88671 1.23162 0.99480 0.84971 0.94886 1.87956 1.18163 1.28822 1.94232 1.21857 0.81677 0.97575 0.92566 1.21753 1.01274 0.92187 1.03985 1.22452 1.02286 0.99792 0.99477 1.22377 0.97479 0.84803 0.99378 1.58254 1.16775 1.24336 1.84946 1.01698 0.72044 0.73478 0.73015 1.93544 1.34605 1.85577 1.85513 1.93592 1.74408 1.55013 1.74763 1.57430 1.44646 1.57432 1.24621 1.21652 0.89698 0.93099 1.01286 1.19173 0.88205 0.91269 0.90055 1.21668 1.08053 1.01642 1.26876 0.95637 1.25948 0.94168 1.02443 0.96489 1.70072 1.13177 1.39300 1.36230 0.85802 0.80993 0.78750 0.78073 1.19068 1.20301 1.15244 0.91765 0.90835 0.91360 0.91566 0.90050 0.92615 0.84954 0.90273 0.89982 0.90908 0.93693 0.91291 0.89740 0.89373 0.89383 0.90033 0.90780 0.91312 0.92742 0.95271 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.77 71.98 0.70 -1.48 16 2 C -0.16 -3.72 3.76 30.60 0.12 -3.61 16 3 C 0.12 2.74 3.14 44.97 0.14 2.88 16 4 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 5 C 0.05 1.04 5.51 72.08 0.40 1.43 16 6 O -0.37 -8.19 10.23 -148.98 -1.52 -9.71 16 7 C 0.10 2.35 1.11 -10.70 -0.01 2.33 16 8 C -0.13 -2.31 8.85 71.98 0.64 -1.67 16 9 C -0.18 -4.20 8.09 71.98 0.58 -3.62 16 10 C 0.09 2.33 5.40 86.36 0.47 2.80 16 11 N -1.00 -29.75 2.91 -489.39 -1.43 -31.18 16 12 S 2.79 110.23 5.61 -56.49 -0.32 109.91 16 13 O -1.01 -49.20 15.78 -128.00 -2.02 -51.22 16 14 O -0.99 -39.21 12.19 -128.00 -1.56 -40.77 16 15 N -1.00 -40.46 3.23 -543.24 -1.75 -42.21 16 16 C 0.09 2.87 9.04 127.77 1.16 4.03 16 17 C 0.24 11.02 4.12 85.63 0.35 11.38 16 18 C -0.54 -31.91 9.94 25.60 0.25 -31.66 16 19 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 20 C 0.01 0.43 5.47 84.65 0.46 0.90 16 21 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 22 Si 0.94 42.49 27.47 68.60 1.88 44.38 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.23 -9.00 6.54 99.48 0.65 -8.35 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.85 6.76 -2.39 -0.02 0.84 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.74 3.24 -2.38 -0.01 1.73 16 30 H 0.08 2.22 6.57 -2.39 -0.02 2.21 16 31 H 0.06 1.15 6.22 -2.39 -0.01 1.14 16 32 H 0.13 1.78 7.02 -2.39 -0.02 1.76 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.16 6.11 -2.38 -0.01 1.14 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 2.74 6.77 -2.39 -0.02 2.72 16 40 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.01 7.28 -2.39 -0.02 1.99 16 42 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 43 H 0.07 2.22 6.92 -2.39 -0.02 2.20 16 44 H 0.05 2.30 7.17 -2.39 -0.02 2.28 16 45 H 0.03 1.33 7.22 -2.39 -0.02 1.31 16 46 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -76.49 355.28 -0.25 -76.75 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.91 Total: 20.29 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 5.26 Total: -16.29 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -2.88 Total: -133.34 kcal Atomic # 8 Polarization: -96.59 SS G_CDS: -5.10 Total: -101.69 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Atomic # 16 Polarization: 110.23 SS G_CDS: -0.32 Total: 109.91 kcal Total: -76.49 -0.25 -76.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.930 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds