Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46763 * 2 1 4 4 H 1.08991 * 109.54995 * 305.12179 * 3 2 1 5 5 C 1.53299 * 109.51020 * 184.99946 * 3 2 1 6 6 N 1.47150 * 108.38276 * 187.77178 * 5 3 2 7 7 S 1.65601 * 120.98259 * 230.51154 * 6 5 3 8 8 O 1.42103 * 106.39886 * 336.46026 * 7 6 5 9 9 O 1.42095 * 106.40145 * 203.54151 * 7 6 5 10 10 N 1.65596 * 107.21751 * 89.99822 * 7 6 5 11 11 C 1.46494 * 120.00265 * 269.99699 * 10 7 6 12 12 C 1.52988 * 109.47593 * 265.00204 * 11 10 7 13 13 C 1.46505 * 119.99655 * 90.00120 * 10 7 6 14 14 C 1.50703 * 109.47064 * 95.00018 * 13 10 7 15 15 H 1.07996 * 119.99751 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46942 * 119.99666 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99580 * 18 16 14 22 22 C 1.47149 * 118.03280 * 50.78560 * 6 5 3 23 23 H 1.09004 * 109.67925 * 189.48837 * 22 6 5 24 24 C 1.52999 * 109.68376 * 68.94116 * 22 6 5 25 25 C 1.53710 * 108.16656 * 309.15473 * 22 6 5 26 26 O 1.42953 * 109.51362 * 65.25453 * 3 2 1 27 27 H 1.08996 * 109.47648 * 299.99945 * 1 2 3 28 28 H 1.09003 * 109.46845 * 60.00476 * 1 2 3 29 29 H 1.09003 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47648 * 240.00055 * 2 1 3 31 31 H 1.09004 * 109.47457 * 119.99083 * 2 1 3 32 32 H 1.09004 * 109.68235 * 68.04964 * 5 3 2 33 33 H 1.09005 * 109.71132 * 307.51261 * 5 3 2 34 34 H 1.08998 * 109.46996 * 25.00920 * 11 10 7 35 35 H 1.09004 * 109.47165 * 144.99843 * 11 10 7 36 36 H 1.09001 * 109.47749 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47346 * 299.99878 * 12 11 10 38 38 H 1.09004 * 109.47160 * 59.99635 * 12 11 10 39 39 H 1.09002 * 109.47068 * 214.99986 * 13 10 7 40 40 H 1.09001 * 109.47372 * 335.00074 * 13 10 7 41 41 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.47554 * 59.99483 * 24 22 6 43 43 H 1.09001 * 109.47367 * 179.97438 * 24 22 6 44 44 H 1.09004 * 109.46881 * 299.99704 * 24 22 6 45 45 H 1.08991 * 109.65882 * 292.57864 * 25 22 6 46 46 H 1.08997 * 109.48787 * 172.39771 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6043 1.9834 -0.8401 5 6 3.5677 1.4456 -0.1259 6 7 4.0463 2.8240 0.0643 7 16 5.0851 3.5230 -1.0196 8 8 5.7573 2.4568 -1.6759 9 8 5.7642 4.5543 -0.3166 10 7 4.1606 4.2723 -2.1712 11 6 3.7483 3.5391 -3.3705 12 6 4.7363 3.8193 -4.5045 13 6 3.7553 5.6685 -1.9906 14 6 4.7306 6.5707 -2.7018 15 1 5.5687 6.1466 -3.2346 16 6 4.5534 7.9377 -2.6713 17 7 3.5330 8.4543 -2.0220 18 14 5.7619 9.0561 -3.5535 19 1 6.8132 8.2335 -4.2042 20 1 5.0428 9.8468 -4.5844 21 1 6.3908 9.9769 -2.5727 22 6 3.5795 3.5608 1.2495 23 1 3.8749 4.6071 1.1711 24 6 4.1883 2.9460 2.5113 25 6 2.0470 3.4567 1.3055 26 8 1.6673 2.0808 1.2237 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8552 1.0905 -1.1156 33 1 4.0007 0.7981 0.6366 34 1 3.7345 2.4705 -3.1563 35 1 2.7511 3.8625 -3.6692 36 1 4.4292 3.2741 -5.3971 37 1 4.7499 4.8879 -4.7188 38 1 5.7334 3.4959 -4.2059 39 1 2.7575 5.8136 -2.4048 40 1 3.7460 5.9096 -0.9276 41 1 3.4085 9.4160 -2.0003 42 1 5.2754 3.0030 2.4553 43 1 3.8407 3.4945 3.3868 44 1 3.8828 1.9027 2.5909 45 1 1.6114 4.0048 0.4702 46 1 1.6880 3.8782 2.2444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593642769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -128.133049 kcal Electronic energy + Delta-G solvation = -27890.624398 eV Core-core repulsion = 24135.021880 eV Total energy + Delta-G solvation = -3755.602519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.62597 -36.75813 -36.07679 -35.31042 -35.11095 -34.08601 -32.61833 -31.16857 -29.85244 -27.86584 -26.76258 -26.09610 -23.97117 -22.81144 -21.92197 -21.73925 -20.26697 -18.40105 -17.38689 -16.93413 -16.66360 -16.45969 -15.69088 -15.35647 -15.02172 -14.94516 -14.32667 -13.99316 -13.83140 -13.67918 -13.30591 -13.06732 -13.01218 -12.78844 -12.29857 -12.23182 -12.04038 -11.99701 -11.72639 -11.58081 -11.50795 -11.38139 -11.28781 -11.12425 -11.11658 -11.03045 -11.00199 -10.97275 -10.53938 -10.47394 -10.27112 -10.05841 -9.88629 -9.61541 -8.66801 -8.45772 -8.10981 -6.08605 -4.11471 1.11654 3.29177 3.36487 3.37292 3.42759 3.72180 4.03055 4.42957 4.53216 4.78073 4.85278 4.93143 5.00434 5.10071 5.16563 5.24814 5.26789 5.36508 5.43075 5.45879 5.59247 5.61156 5.70191 5.73797 5.80091 5.81126 5.85965 5.91059 5.95461 6.02030 6.11650 6.18318 6.24195 6.35669 6.39776 6.60271 6.74834 6.95855 7.17693 7.19733 7.37889 7.59746 7.89562 8.18755 8.90923 9.53554 11.00154 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004736 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.645461 B = 5910.239684 C = 6145.672932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.077 3.923 4 H 0.065 0.935 5 C 0.096 3.904 6 N -1.011 6.011 7 S 2.776 3.224 8 O -0.993 6.993 9 O -0.960 6.960 10 N -0.993 5.993 11 C 0.136 3.864 12 C -0.172 4.172 13 C 0.259 3.741 14 C -0.524 4.524 15 H 0.063 0.937 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.114 3.886 23 H 0.108 0.892 24 C -0.153 4.153 25 C 0.056 3.944 26 O -0.372 6.372 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -14.942 4.786 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.083 0.917 5 C -0.031 4.031 6 N -0.849 5.849 7 S 2.786 3.214 8 O -0.977 6.977 9 O -0.944 6.944 10 N -0.835 5.835 11 C 0.010 3.990 12 C -0.231 4.231 13 C 0.137 3.863 14 C -0.563 4.563 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.208 1.208 22 C 0.008 3.992 23 H 0.126 0.874 24 C -0.212 4.212 25 C -0.022 4.022 26 O -0.291 6.291 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.296 -14.877 5.008 16.567 hybrid contribution 0.412 1.000 -0.711 1.294 sum -4.884 -13.878 4.297 15.327 Atomic orbital electron populations 1.21694 0.95070 1.01354 1.02424 1.21517 0.96882 0.94061 1.02849 1.22511 0.93426 0.94332 0.87943 0.91732 1.21996 0.94803 0.83292 1.02976 1.58738 1.66583 1.22217 1.37328 1.02179 0.73752 0.72596 0.72829 1.93526 1.71746 1.57216 1.75230 1.93618 1.70531 1.56894 1.73316 1.57856 1.71688 1.22956 1.30981 1.20940 0.98590 0.93801 0.85706 1.22254 0.99589 1.03872 0.97393 1.19038 0.96234 0.73677 0.97352 1.21551 1.10952 0.91088 1.32748 0.91885 1.24920 0.95557 0.98027 0.95474 1.69919 1.29138 1.12215 1.42278 0.86501 0.81243 0.80665 0.79414 1.19645 1.20998 1.20834 1.21710 0.94953 0.97214 0.85370 0.87381 1.21996 1.01105 1.01659 0.96428 1.23029 0.93284 0.82943 1.02951 1.87885 1.79609 1.23958 1.37623 0.91924 0.92835 0.92887 0.90437 0.91003 0.88985 0.90805 0.92451 0.91131 0.93054 0.90233 0.92861 0.94818 0.94776 0.92786 0.92304 0.91540 0.91898 0.92108 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.08 0.89 2.78 -26.57 -0.07 0.81 16 4 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.10 1.22 5.46 -3.53 -0.02 1.20 16 6 N -1.01 -15.81 3.09 -105.80 -0.33 -16.13 16 7 S 2.78 55.46 6.02 -107.50 -0.65 54.82 16 8 O -0.99 -20.61 15.91 -57.17 -0.91 -21.52 16 9 O -0.96 -22.86 15.90 -57.17 -0.91 -23.77 16 10 N -0.99 -20.12 2.86 -115.67 -0.33 -20.45 16 11 C 0.14 2.33 6.09 -4.05 -0.02 2.30 16 12 C -0.17 -3.02 9.83 37.15 0.37 -2.66 16 13 C 0.26 6.26 5.12 -5.19 -0.03 6.23 16 14 C -0.52 -14.28 8.41 -34.44 -0.29 -14.57 16 15 H 0.06 1.73 6.89 -52.49 -0.36 1.37 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -25.57 13.29 55.43 0.74 -24.84 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.11 1.65 3.18 -67.21 -0.21 1.44 16 23 H 0.11 1.77 7.24 -51.93 -0.38 1.39 16 24 C -0.15 -1.92 9.25 37.16 0.34 -1.58 16 25 C 0.06 0.71 6.38 37.53 0.24 0.95 16 26 O -0.37 -4.67 9.56 -35.23 -0.34 -5.00 16 27 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.14 7.25 -51.93 -0.38 0.76 16 33 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 34 H 0.06 0.84 7.61 -51.93 -0.40 0.45 16 35 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.57 6.59 -51.93 -0.34 1.22 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.83 8.00 -51.93 -0.42 0.41 16 40 H 0.03 0.87 7.61 -51.93 -0.40 0.48 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.75 7.21 -51.93 -0.37 0.37 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -32.22 374.65 -9.72 -41.94 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.04 Total: -0.93 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.42 Total: -6.33 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.08 Total: -61.42 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -2.16 Total: -50.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.65 Total: 54.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.22 -9.72 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.195 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds