Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46763 * 2 1 4 4 H 1.08991 * 109.54995 * 305.12179 * 3 2 1 5 5 C 1.53299 * 109.51020 * 184.99946 * 3 2 1 6 6 N 1.47150 * 108.38276 * 187.77178 * 5 3 2 7 7 S 1.65601 * 120.98259 * 230.51154 * 6 5 3 8 8 O 1.42103 * 106.39886 * 336.46026 * 7 6 5 9 9 O 1.42095 * 106.40145 * 203.54151 * 7 6 5 10 10 N 1.65596 * 107.21751 * 89.99822 * 7 6 5 11 11 C 1.46494 * 120.00265 * 269.99699 * 10 7 6 12 12 C 1.52988 * 109.47593 * 265.00204 * 11 10 7 13 13 C 1.46505 * 119.99655 * 90.00120 * 10 7 6 14 14 C 1.50703 * 109.47064 * 95.00018 * 13 10 7 15 15 H 1.07996 * 119.99751 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46942 * 119.99666 * 18 16 14 21 21 H 1.48504 * 109.46979 * 239.99580 * 18 16 14 22 22 C 1.47149 * 118.03280 * 50.78560 * 6 5 3 23 23 H 1.09004 * 109.67925 * 189.48837 * 22 6 5 24 24 C 1.52999 * 109.68376 * 68.94116 * 22 6 5 25 25 C 1.53710 * 108.16656 * 309.15473 * 22 6 5 26 26 O 1.42953 * 109.51362 * 65.25453 * 3 2 1 27 27 H 1.08996 * 109.47648 * 299.99945 * 1 2 3 28 28 H 1.09003 * 109.46845 * 60.00476 * 1 2 3 29 29 H 1.09003 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47648 * 240.00055 * 2 1 3 31 31 H 1.09004 * 109.47457 * 119.99083 * 2 1 3 32 32 H 1.09004 * 109.68235 * 68.04964 * 5 3 2 33 33 H 1.09005 * 109.71132 * 307.51261 * 5 3 2 34 34 H 1.08998 * 109.46996 * 25.00920 * 11 10 7 35 35 H 1.09004 * 109.47165 * 144.99843 * 11 10 7 36 36 H 1.09001 * 109.47749 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47346 * 299.99878 * 12 11 10 38 38 H 1.09004 * 109.47160 * 59.99635 * 12 11 10 39 39 H 1.09002 * 109.47068 * 214.99986 * 13 10 7 40 40 H 1.09001 * 109.47372 * 335.00074 * 13 10 7 41 41 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.47554 * 59.99483 * 24 22 6 43 43 H 1.09001 * 109.47367 * 179.97438 * 24 22 6 44 44 H 1.09004 * 109.46881 * 299.99704 * 24 22 6 45 45 H 1.08991 * 109.65882 * 292.57864 * 25 22 6 46 46 H 1.08997 * 109.48787 * 172.39771 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6043 1.9834 -0.8401 5 6 3.5677 1.4456 -0.1259 6 7 4.0463 2.8240 0.0643 7 16 5.0851 3.5230 -1.0196 8 8 5.7573 2.4568 -1.6759 9 8 5.7642 4.5543 -0.3166 10 7 4.1606 4.2723 -2.1712 11 6 3.7483 3.5391 -3.3705 12 6 4.7363 3.8193 -4.5045 13 6 3.7553 5.6685 -1.9906 14 6 4.7306 6.5707 -2.7018 15 1 5.5687 6.1466 -3.2346 16 6 4.5534 7.9377 -2.6713 17 7 3.5330 8.4543 -2.0220 18 14 5.7619 9.0561 -3.5535 19 1 6.8132 8.2335 -4.2042 20 1 5.0428 9.8468 -4.5844 21 1 6.3908 9.9769 -2.5727 22 6 3.5795 3.5608 1.2495 23 1 3.8749 4.6071 1.1711 24 6 4.1883 2.9460 2.5113 25 6 2.0470 3.4567 1.3055 26 8 1.6673 2.0808 1.2237 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.8552 1.0905 -1.1156 33 1 4.0007 0.7981 0.6366 34 1 3.7345 2.4705 -3.1563 35 1 2.7511 3.8625 -3.6692 36 1 4.4292 3.2741 -5.3971 37 1 4.7499 4.8879 -4.7188 38 1 5.7334 3.4959 -4.2059 39 1 2.7575 5.8136 -2.4048 40 1 3.7460 5.9096 -0.9276 41 1 3.4085 9.4160 -2.0003 42 1 5.2754 3.0030 2.4553 43 1 3.8407 3.4945 3.3868 44 1 3.8828 1.9027 2.5909 45 1 1.6114 4.0048 0.4702 46 1 1.6880 3.8782 2.2444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593642769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -150.267865 kcal Electronic energy + Delta-G solvation = -27891.584236 eV Core-core repulsion = 24135.021880 eV Total energy + Delta-G solvation = -3756.562356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65862 -38.42142 -37.73298 -36.89931 -36.30218 -34.99777 -34.65791 -32.14443 -31.47028 -28.91563 -28.64649 -27.12790 -24.95036 -24.67227 -23.44546 -22.67584 -21.36524 -19.74938 -18.96905 -18.57744 -18.35877 -17.73401 -17.13464 -16.59131 -16.45979 -16.04345 -15.85389 -15.35751 -15.06793 -14.76937 -14.63714 -14.56385 -14.24134 -14.02918 -13.74917 -13.63181 -13.39165 -13.24516 -13.18326 -13.06618 -12.99449 -12.84895 -12.81734 -12.79463 -12.44886 -12.30245 -12.19004 -12.17060 -11.96051 -11.78837 -11.66237 -11.58066 -11.24786 -11.13644 -10.57955 -9.83899 -9.79084 -8.19860 -6.29212 -0.43984 1.36414 1.39489 1.50171 1.93153 2.38368 2.51473 2.78987 3.11435 3.26152 3.62306 3.72486 3.90153 3.98165 4.05233 4.11386 4.22863 4.26869 4.41817 4.46710 4.52086 4.57935 4.60111 4.68216 4.72074 4.74570 4.81877 4.91529 4.94677 5.01973 5.13559 5.16930 5.17540 5.19938 5.24970 5.34743 5.43859 5.49340 5.51923 5.58881 5.73161 5.96707 6.12538 6.21750 6.78314 7.38727 8.88066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004736 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.645461 B = 5910.239684 C = 6145.672932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.077 3.923 4 H 0.060 0.940 5 C 0.089 3.911 6 N -1.004 6.004 7 S 2.787 3.213 8 O -1.003 7.003 9 O -1.006 7.006 10 N -0.997 5.997 11 C 0.126 3.874 12 C -0.171 4.171 13 C 0.276 3.724 14 C -0.538 4.538 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.281 1.281 22 C 0.106 3.894 23 H 0.082 0.918 24 C -0.147 4.147 25 C 0.062 3.938 26 O -0.372 6.372 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.028 0.972 40 H 0.014 0.986 41 H 0.266 0.734 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.049 0.951 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -16.672 4.655 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.017 3.983 4 H 0.078 0.922 5 C -0.036 4.036 6 N -0.845 5.845 7 S 2.798 3.202 8 O -0.987 6.987 9 O -0.990 6.990 10 N -0.838 5.838 11 C 0.001 3.999 12 C -0.230 4.230 13 C 0.153 3.847 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.207 1.207 22 C 0.000 4.000 23 H 0.100 0.900 24 C -0.206 4.206 25 C -0.016 4.016 26 O -0.291 6.291 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.135 -16.627 4.853 18.375 hybrid contribution 0.648 1.445 -0.650 1.712 sum -5.487 -15.182 4.204 16.682 Atomic orbital electron populations 1.21674 0.94738 1.02171 1.01768 1.21550 0.97082 0.92227 1.04031 1.22640 0.92319 0.95851 0.87470 0.92208 1.22319 0.95897 0.81493 1.03935 1.58378 1.66081 1.23370 1.36676 1.01597 0.73913 0.71956 0.72750 1.93499 1.72459 1.57003 1.75711 1.93552 1.72385 1.58807 1.74275 1.57748 1.71604 1.21767 1.32678 1.21251 0.99104 0.95132 0.84419 1.22229 0.99036 1.02501 0.99193 1.18584 0.95167 0.75428 0.95551 1.21848 1.11172 0.91978 1.32743 0.92865 1.25653 0.97135 0.99422 0.96260 1.69999 1.30401 1.12660 1.43284 0.85645 0.79357 0.78926 0.78629 1.19612 1.19582 1.20694 1.21879 0.96519 0.95979 0.85608 0.90008 1.21971 1.00102 1.02486 0.96064 1.23005 0.91593 0.83290 1.03736 1.87899 1.79435 1.23579 1.38149 0.93088 0.92996 0.91355 0.88661 0.90425 0.88350 0.89324 0.89481 0.89640 0.89358 0.92975 0.94477 0.95439 0.96824 0.92500 0.93674 0.89423 0.90739 0.93294 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.81 71.98 0.71 -1.44 16 2 C -0.11 -1.67 5.64 30.60 0.17 -1.50 16 3 C 0.08 1.59 2.78 30.70 0.09 1.68 16 4 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 5 C 0.09 2.09 5.46 86.36 0.47 2.56 16 6 N -1.00 -30.92 3.09 -488.64 -1.51 -32.43 16 7 S 2.79 112.59 6.02 -56.49 -0.34 112.25 16 8 O -1.00 -41.20 15.91 -128.00 -2.04 -43.24 16 9 O -1.01 -49.74 15.90 -128.00 -2.04 -51.77 16 10 N -1.00 -40.79 2.86 -519.86 -1.48 -42.27 16 11 C 0.13 4.17 6.09 86.38 0.53 4.70 16 12 C -0.17 -5.86 9.83 71.98 0.71 -5.15 16 13 C 0.28 13.72 5.12 85.63 0.44 14.16 16 14 C -0.54 -30.00 8.41 25.60 0.22 -29.79 16 15 H 0.05 3.01 6.89 -2.91 -0.02 2.99 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -53.46 13.29 21.45 0.28 -53.17 16 18 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 C 0.11 3.06 3.18 45.11 0.14 3.20 16 23 H 0.08 2.80 7.24 -2.38 -0.02 2.78 16 24 C -0.15 -3.53 9.25 71.98 0.67 -2.87 16 25 C 0.06 1.51 6.38 72.22 0.46 1.97 16 26 O -0.37 -8.57 9.56 -148.98 -1.42 -10.00 16 27 H 0.05 0.87 7.83 -2.39 -0.02 0.85 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.10 2.21 7.25 -2.38 -0.02 2.19 16 33 H 0.09 1.86 7.65 -2.38 -0.02 1.85 16 34 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 35 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.05 2.06 6.59 -2.39 -0.02 2.04 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.03 1.39 8.00 -2.39 -0.02 1.37 16 40 H 0.01 0.74 7.61 -2.39 -0.02 0.72 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.61 7.21 -2.38 -0.02 1.59 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -70.03 374.65 -0.53 -70.56 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.94 Total: 14.58 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.06 Total: -11.18 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -2.71 Total: -127.87 kcal Atomic # 8 Polarization: -99.51 SS G_CDS: -5.50 Total: -105.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 112.59 SS G_CDS: -0.34 Total: 112.25 kcal Total: -70.03 -0.53 -70.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593642769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.708 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds