Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00185 * 2 1 4 4 N 1.46495 * 109.47345 * 124.99531 * 3 2 1 5 5 C 1.46498 * 119.99957 * 270.00091 * 4 3 2 6 6 C 1.50699 * 109.47090 * 270.00216 * 5 4 3 7 7 H 1.08003 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00314 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99624 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00346 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47357 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47126 * 119.99733 * 10 8 6 13 13 H 1.48494 * 109.47320 * 239.99897 * 10 8 6 14 14 C 1.34777 * 119.99913 * 90.00048 * 4 3 2 15 15 O 1.21282 * 119.99765 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00119 * 0.02562 * 14 4 3 17 17 N 1.46498 * 109.47124 * 179.97438 * 16 14 4 18 18 N 1.40311 * 126.32212 * 270.02177 * 17 16 14 19 19 C 1.28879 * 108.11780 * 180.35790 * 18 17 16 20 20 N 1.38115 * 108.89174 * 0.79814 * 19 18 17 21 21 C 1.34311 * 108.29826 * 358.29147 * 20 19 18 22 22 O 1.21812 * 126.32274 * 181.84202 * 21 20 19 23 23 C 1.46718 * 124.21456 * 177.64895 * 20 19 18 24 24 C 1.53292 * 108.66063 * 19.14150 * 23 20 19 25 25 C 1.53240 * 109.34732 * 308.24821 * 24 23 20 26 26 C 1.51117 * 127.46218 * 180.92581 * 19 18 17 27 27 H 1.08002 * 119.99771 * 180.02562 * 1 2 3 28 28 H 1.07989 * 120.00200 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00228 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47002 * 4.99373 * 3 2 1 31 31 H 1.08995 * 109.46695 * 245.00153 * 3 2 1 32 32 H 1.09003 * 109.47387 * 29.99770 * 5 4 3 33 33 H 1.08998 * 109.47184 * 150.00395 * 5 4 3 34 34 H 0.96999 * 120.00009 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47506 * 59.99723 * 16 14 4 36 36 H 1.09001 * 109.47205 * 299.99832 * 16 14 4 37 37 H 1.08994 * 109.60708 * 259.38586 * 23 20 19 38 38 H 1.09000 * 109.60610 * 138.88621 * 23 20 19 39 39 H 1.08997 * 109.49061 * 188.28707 * 24 23 20 40 40 H 1.08995 * 109.48951 * 68.20476 * 24 23 20 41 41 H 1.08998 * 109.54723 * 310.91385 * 25 24 23 42 42 H 1.09000 * 109.62362 * 190.67860 * 25 24 23 43 43 H 1.09002 * 109.75296 * 78.15387 * 26 19 18 44 44 H 1.09003 * 109.74935 * 317.46876 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4802 7 1 3.3039 3.8371 1.6366 8 6 2.5191 4.0668 3.6084 9 7 1.9597 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 3.5012 6.3308 2.4025 12 1 1.6032 6.6421 3.8791 13 1 3.7970 6.1831 4.8051 14 6 4.2497 0.8662 0.9825 15 8 5.0199 0.8889 1.9191 16 6 4.6973 0.3183 -0.3481 17 7 6.0919 -0.1199 -0.2516 18 7 7.2284 0.6630 -0.5048 19 6 8.2707 -0.0727 -0.3218 20 7 7.8640 -1.3440 0.0331 21 6 6.5225 -1.3547 0.0988 22 8 5.8231 -2.3008 0.4142 23 6 8.7785 -2.4660 0.2724 24 6 10.1811 -1.9075 0.5384 25 6 10.5635 -0.9391 -0.5860 26 6 9.7193 0.3360 -0.4562 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3605 3.2259 34 1 1.7307 3.9748 5.4294 35 1 4.6127 1.0952 -1.1080 36 1 4.0682 -0.5284 -0.6226 37 1 8.8025 -3.1120 -0.6052 38 1 8.4410 -3.0346 1.1390 39 1 10.8986 -2.7272 0.5721 40 1 10.1872 -1.3787 1.4915 41 1 10.3713 -1.4070 -1.5515 42 1 11.6208 -0.6861 -0.5074 43 1 10.0282 0.8938 0.4279 44 1 9.8467 0.9542 -1.3448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593721090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = 33.039169 kcal Electronic energy + Delta-G solvation = -27385.313246 eV Core-core repulsion = 23533.548479 eV Total energy + Delta-G solvation = -3851.764767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.44227 -39.12875 -37.61743 -36.74758 -35.65265 -33.56118 -33.14096 -32.46192 -32.02499 -29.23045 -28.35576 -27.00052 -25.44660 -24.52281 -22.80751 -22.71794 -21.45426 -19.99992 -19.83312 -18.63382 -17.32465 -16.94566 -16.50302 -16.30795 -15.95973 -15.72374 -15.15391 -14.77270 -14.62506 -14.56153 -14.42016 -14.33159 -13.98839 -13.47244 -13.14246 -13.00276 -12.64257 -12.44061 -12.09209 -11.88903 -11.75937 -11.67015 -11.46763 -11.33890 -11.28609 -11.25152 -11.00834 -10.85516 -10.60187 -10.18462 -10.14243 -10.05241 -9.60763 -9.17649 -9.02609 -8.41693 -8.27665 -7.70337 -6.02057 -4.06727 1.78489 2.03772 2.46897 2.84611 3.00637 3.31152 3.33088 3.39040 3.43971 3.98265 4.10285 4.27121 4.34073 4.46290 4.47796 4.81659 4.95667 4.98214 5.04991 5.17238 5.24260 5.29664 5.32468 5.34222 5.40023 5.41256 5.45314 5.49220 5.60995 5.67999 5.77520 5.95816 6.02186 6.17329 6.24703 6.59879 6.82487 6.92654 7.08791 7.46805 7.54362 7.75977 7.94195 8.19149 8.25149 8.36498 8.90230 9.05144 9.57973 11.06181 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.003733 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.224756 B = 7498.637125 C = 8884.083962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.133 3.867 4 N -0.590 5.590 5 C 0.249 3.751 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.491 3.509 15 O -0.525 6.525 16 C 0.141 3.859 17 N -0.434 5.434 18 N -0.262 5.262 19 C 0.269 3.731 20 N -0.557 5.557 21 C 0.657 3.343 22 O -0.556 6.556 23 C 0.132 3.868 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.039 4.039 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.813 -10.016 -15.170 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.010 3.990 4 N -0.322 5.322 5 C 0.130 3.870 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.275 3.725 15 O -0.401 6.401 16 C 0.016 3.984 17 N -0.253 5.253 18 N -0.083 5.083 19 C -0.010 4.010 20 N -0.287 5.287 21 C 0.356 3.644 22 O -0.430 6.430 23 C 0.011 3.989 24 C -0.176 4.176 25 C -0.161 4.161 26 C -0.078 4.078 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.198 -9.712 -14.486 21.871 hybrid contribution 0.090 0.324 0.469 0.577 sum 13.288 -9.388 -14.017 21.475 Atomic orbital electron populations 1.23816 0.95787 1.01797 1.00271 1.23453 0.96554 0.99012 1.00153 1.20644 0.93302 0.95666 0.89428 1.48207 1.10000 1.60168 1.13871 1.19293 0.95438 0.93762 0.78539 1.21476 1.40384 0.93241 1.01320 0.92321 1.24943 0.95086 0.98795 0.95318 1.69955 1.42144 1.36057 1.05171 0.86439 0.77882 0.84941 0.78140 1.19746 1.20963 1.20927 1.20525 0.82920 0.79323 0.89711 1.90696 1.52485 1.55524 1.41354 1.21416 0.76478 1.02206 0.98308 1.48408 1.04617 1.08416 1.63872 1.76732 0.90497 1.18534 1.22541 1.24221 0.97342 0.82053 0.97392 1.46017 1.07047 1.11336 1.64286 1.16504 0.82010 0.84504 0.81333 1.91055 1.59200 1.37188 1.55521 1.21740 0.87876 0.86426 1.02891 1.21988 0.94974 1.00488 1.00110 1.21708 1.00273 0.94788 0.99320 1.20466 0.83391 0.98692 1.05286 0.88727 0.88225 0.87630 0.89019 0.90843 0.94752 0.93983 0.92799 0.86382 0.86553 0.90202 0.89122 0.89024 0.90279 0.90814 0.89531 0.87948 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.32 29.01 0.42 -1.98 16 2 C -0.17 -2.55 9.74 -36.03 -0.35 -2.90 16 3 C 0.13 2.19 5.65 -5.20 -0.03 2.16 16 4 N -0.59 -12.99 2.44 -176.44 -0.43 -13.42 16 5 C 0.25 6.73 5.16 -5.19 -0.03 6.70 16 6 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 7 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 10 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 C 0.49 11.05 7.74 -10.99 -0.09 10.97 16 15 O -0.52 -14.47 16.01 5.56 0.09 -14.38 16 16 C 0.14 2.43 5.43 -5.20 -0.03 2.40 16 17 N -0.43 -7.99 3.13 -66.32 -0.21 -8.19 16 18 N -0.26 -4.38 12.51 33.15 0.41 -3.96 16 19 C 0.27 3.55 7.73 -153.65 -1.19 2.36 16 20 N -0.56 -7.90 3.14 -117.44 -0.37 -8.27 16 21 C 0.66 12.28 8.65 -86.78 -0.75 11.53 16 22 O -0.56 -11.89 17.84 5.09 0.09 -11.79 16 23 C 0.13 1.25 6.87 -3.77 -0.03 1.22 16 24 C -0.14 -0.82 5.94 -26.46 -0.16 -0.98 16 25 C -0.12 -0.61 5.96 -26.36 -0.16 -0.77 16 26 C -0.04 -0.29 6.32 -27.44 -0.17 -0.46 16 27 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 29 H 0.11 1.54 7.83 -52.48 -0.41 1.13 16 30 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 31 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 32 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.12 1.67 7.40 -51.93 -0.38 1.28 16 36 H 0.12 1.76 7.76 -51.93 -0.40 1.35 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -40.00 373.29 -8.54 -48.55 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.50 Total: -1.35 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: -2.98 Total: 16.40 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.14 Total: -60.26 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: 0.18 Total: -26.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -40.00 -8.54 -48.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593721090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.588 kcal (2) G-P(sol) polarization free energy of solvation -40.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds