Wall clock time and date at job start Tue Mar 31 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00185 * 2 1 4 4 N 1.46495 * 109.47345 * 124.99531 * 3 2 1 5 5 C 1.46498 * 119.99957 * 270.00091 * 4 3 2 6 6 C 1.50699 * 109.47090 * 270.00216 * 5 4 3 7 7 H 1.08003 * 120.00343 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00314 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99624 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00346 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47357 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47126 * 119.99733 * 10 8 6 13 13 H 1.48494 * 109.47320 * 239.99897 * 10 8 6 14 14 C 1.34777 * 119.99913 * 90.00048 * 4 3 2 15 15 O 1.21282 * 119.99765 * 179.97438 * 14 4 3 16 16 C 1.50696 * 120.00119 * 0.02562 * 14 4 3 17 17 N 1.46498 * 109.47124 * 179.97438 * 16 14 4 18 18 N 1.40311 * 126.32212 * 270.02177 * 17 16 14 19 19 C 1.28879 * 108.11780 * 180.35790 * 18 17 16 20 20 N 1.38115 * 108.89174 * 0.79814 * 19 18 17 21 21 C 1.34311 * 108.29826 * 358.29147 * 20 19 18 22 22 O 1.21812 * 126.32274 * 181.84202 * 21 20 19 23 23 C 1.46718 * 124.21456 * 177.64895 * 20 19 18 24 24 C 1.53292 * 108.66063 * 19.14150 * 23 20 19 25 25 C 1.53240 * 109.34732 * 308.24821 * 24 23 20 26 26 C 1.51117 * 127.46218 * 180.92581 * 19 18 17 27 27 H 1.08002 * 119.99771 * 180.02562 * 1 2 3 28 28 H 1.07989 * 120.00200 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00228 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47002 * 4.99373 * 3 2 1 31 31 H 1.08995 * 109.46695 * 245.00153 * 3 2 1 32 32 H 1.09003 * 109.47387 * 29.99770 * 5 4 3 33 33 H 1.08998 * 109.47184 * 150.00395 * 5 4 3 34 34 H 0.96999 * 120.00009 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47506 * 59.99723 * 16 14 4 36 36 H 1.09001 * 109.47205 * 299.99832 * 16 14 4 37 37 H 1.08994 * 109.60708 * 259.38586 * 23 20 19 38 38 H 1.09000 * 109.60610 * 138.88621 * 23 20 19 39 39 H 1.08997 * 109.49061 * 188.28707 * 24 23 20 40 40 H 1.08995 * 109.48951 * 68.20476 * 24 23 20 41 41 H 1.08998 * 109.54723 * 310.91385 * 25 24 23 42 42 H 1.09000 * 109.62362 * 190.67860 * 25 24 23 43 43 H 1.09002 * 109.75296 * 78.15387 * 26 19 18 44 44 H 1.09003 * 109.74935 * 317.46876 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4802 7 1 3.3039 3.8371 1.6366 8 6 2.5191 4.0668 3.6084 9 7 1.9597 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 3.5012 6.3308 2.4025 12 1 1.6032 6.6421 3.8791 13 1 3.7970 6.1831 4.8051 14 6 4.2497 0.8662 0.9825 15 8 5.0199 0.8889 1.9191 16 6 4.6973 0.3183 -0.3481 17 7 6.0919 -0.1199 -0.2516 18 7 7.2284 0.6630 -0.5048 19 6 8.2707 -0.0727 -0.3218 20 7 7.8640 -1.3440 0.0331 21 6 6.5225 -1.3547 0.0988 22 8 5.8231 -2.3008 0.4142 23 6 8.7785 -2.4660 0.2724 24 6 10.1811 -1.9075 0.5384 25 6 10.5635 -0.9391 -0.5860 26 6 9.7193 0.3360 -0.4562 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4886 1.6968 2.5458 33 1 3.0988 1.3605 3.2259 34 1 1.7307 3.9748 5.4294 35 1 4.6127 1.0952 -1.1080 36 1 4.0682 -0.5284 -0.6226 37 1 8.8025 -3.1120 -0.6052 38 1 8.4410 -3.0346 1.1390 39 1 10.8986 -2.7272 0.5721 40 1 10.1872 -1.3787 1.4915 41 1 10.3713 -1.4070 -1.5515 42 1 11.6208 -0.6861 -0.5074 43 1 10.0282 0.8938 0.4279 44 1 9.8467 0.9542 -1.3448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593721090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:57 Heat of formation + Delta-G solvation = 5.837772 kcal Electronic energy + Delta-G solvation = -27386.492787 eV Core-core repulsion = 23533.548479 eV Total energy + Delta-G solvation = -3852.944308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.62441 -40.84724 -38.81096 -37.85767 -37.28163 -35.22037 -34.42753 -33.74562 -33.55557 -30.54068 -29.67119 -28.54981 -26.94640 -25.66339 -24.49368 -23.63821 -22.79430 -21.25590 -20.67111 -20.22044 -18.76157 -18.50996 -18.33663 -17.68002 -17.31097 -16.96938 -16.76867 -16.24940 -16.08185 -15.70606 -15.44208 -15.21246 -15.14458 -14.60075 -14.47573 -14.25687 -14.17309 -13.98142 -13.47586 -13.34921 -13.13842 -13.06170 -12.88542 -12.85294 -12.63578 -12.28339 -12.22262 -12.07985 -11.88119 -11.84619 -11.68865 -11.37105 -11.34542 -10.68541 -10.64885 -10.35913 -9.64788 -9.57648 -8.25442 -6.40608 0.58119 0.95550 1.28448 1.34683 1.37257 1.48044 1.49800 1.62613 1.97122 2.31015 2.43898 3.04401 3.20380 3.49241 3.58222 3.74824 3.84694 3.89453 3.95361 4.06771 4.22572 4.33454 4.36308 4.38852 4.45180 4.55280 4.76438 4.81283 4.86495 4.89300 4.93590 5.00826 5.03936 5.06562 5.15881 5.18077 5.35612 5.45672 5.61183 5.69315 5.71515 5.89905 6.01384 6.54882 6.56512 6.69170 6.86208 7.19199 7.34207 8.82636 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.003733 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.224756 B = 7498.637125 C = 8884.083962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.192 4.192 3 C 0.129 3.871 4 N -0.592 5.592 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.482 3.518 15 O -0.589 6.589 16 C 0.151 3.849 17 N -0.446 5.446 18 N -0.303 5.303 19 C 0.283 3.717 20 N -0.553 5.553 21 C 0.637 3.363 22 O -0.598 6.598 23 C 0.118 3.882 24 C -0.131 4.131 25 C -0.114 4.114 26 C -0.041 4.041 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.025 0.975 33 H -0.012 1.012 34 H 0.267 0.733 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.666 -9.299 -17.532 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.211 4.211 3 C 0.007 3.993 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.796 3.204 11 H -0.189 1.189 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.269 3.731 15 O -0.469 6.469 16 C 0.026 3.974 17 N -0.264 5.264 18 N -0.125 5.125 19 C 0.005 3.995 20 N -0.282 5.282 21 C 0.336 3.664 22 O -0.475 6.475 23 C -0.002 4.002 24 C -0.169 4.169 25 C -0.152 4.152 26 C -0.080 4.080 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.043 0.957 33 H 0.006 0.994 34 H 0.076 0.924 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.062 -9.004 -16.910 24.370 hybrid contribution -0.476 0.029 1.229 1.318 sum 14.587 -8.975 -15.681 23.221 Atomic orbital electron populations 1.24062 0.95345 1.03049 0.97565 1.23324 0.97053 0.98142 1.02559 1.20961 0.92927 0.96594 0.88769 1.48198 1.11079 1.59372 1.13625 1.18711 0.93859 0.92914 0.79995 1.21717 1.40632 0.94056 1.01630 0.92532 1.25916 0.94553 1.04085 0.94719 1.70081 1.42837 1.38193 1.05832 0.85308 0.78284 0.78613 0.78242 1.18857 1.19153 1.20883 1.21510 0.82229 0.78258 0.91094 1.90648 1.54252 1.58137 1.43900 1.21452 0.76883 1.03715 0.95318 1.48574 1.05407 1.08639 1.63827 1.76734 0.90789 1.19337 1.25592 1.25433 0.99005 0.81000 0.94024 1.46332 1.05960 1.12901 1.62965 1.16909 0.83554 0.84371 0.81573 1.90994 1.60606 1.38473 1.57434 1.22227 0.88971 0.85722 1.03300 1.22045 0.92979 1.01788 1.00051 1.21754 1.01430 0.92903 0.99109 1.20911 0.79801 1.00639 1.06678 0.86703 0.87726 0.87511 0.89413 0.86990 0.95678 0.99351 0.92391 0.82893 0.84487 0.88130 0.90638 0.85672 0.91390 0.89909 0.86153 0.87107 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 14.32 67.78 0.97 -3.15 16 2 C -0.19 -5.55 9.74 25.65 0.25 -5.30 16 3 C 0.13 4.19 5.65 85.63 0.48 4.67 16 4 N -0.59 -26.95 2.44 -830.52 -2.03 -28.98 16 5 C 0.27 15.22 5.16 85.63 0.44 15.66 16 6 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 7 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 8 C 0.01 0.36 5.46 84.66 0.46 0.82 16 9 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 10 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.48 22.60 7.74 87.66 0.68 23.27 16 15 O -0.59 -34.53 16.01 -3.03 -0.05 -34.57 16 16 C 0.15 5.23 5.43 85.63 0.46 5.70 16 17 N -0.45 -16.73 3.13 -481.57 -1.51 -18.24 16 18 N -0.30 -10.09 12.51 -49.04 -0.61 -10.71 16 19 C 0.28 7.22 7.73 137.71 1.06 8.28 16 20 N -0.55 -15.66 3.14 -643.89 -2.02 -17.67 16 21 C 0.64 24.58 8.65 179.01 1.55 26.13 16 22 O -0.60 -26.78 17.84 -4.71 -0.08 -26.86 16 23 C 0.12 2.11 6.87 86.44 0.59 2.70 16 24 C -0.13 -1.19 5.94 30.77 0.18 -1.00 16 25 C -0.11 -0.66 5.96 30.83 0.18 -0.48 16 26 C -0.04 -0.50 6.32 30.14 0.19 -0.31 16 27 H 0.11 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.10 2.55 7.84 -2.92 -0.02 2.53 16 29 H 0.11 3.08 7.83 -2.91 -0.02 3.06 16 30 H 0.09 2.91 7.72 -2.39 -0.02 2.89 16 31 H 0.11 2.72 6.44 -2.39 -0.02 2.71 16 32 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 33 H -0.01 -0.78 7.42 -2.39 -0.02 -0.80 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.15 4.10 7.40 -2.39 -0.02 4.09 16 36 H 0.14 4.11 7.76 -2.39 -0.02 4.10 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 41 H 0.08 0.41 8.11 -2.39 -0.02 0.39 16 42 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -94.50 373.29 4.77 -89.73 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.00 Total: 12.13 kcal Atomic # 6 Polarization: 37.16 SS G_CDS: 7.76 Total: 44.92 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -5.88 Total: -133.34 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -0.13 Total: -61.44 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -94.50 4.77 -89.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593721090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.571 kcal (2) G-P(sol) polarization free energy of solvation -94.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds