Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 H 1.09005 * 109.46889 * 301.27789 * 3 2 1 5 5 N 1.46501 * 109.47268 * 61.28102 * 3 2 1 6 6 S 1.65609 * 119.99746 * 246.46600 * 5 3 2 7 7 O 1.42093 * 106.39900 * 44.04040 * 6 5 3 8 8 O 1.42101 * 106.39826 * 176.96269 * 6 5 3 9 9 N 1.65598 * 107.21649 * 290.49911 * 6 5 3 10 10 C 1.46498 * 120.00176 * 259.73576 * 9 6 5 11 11 C 1.50702 * 109.47352 * 95.87582 * 10 9 6 12 12 H 1.07999 * 119.99639 * 4.89113 * 11 10 9 13 13 C 1.37876 * 119.99766 * 184.89932 * 11 10 9 14 14 N 1.31518 * 119.99386 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00422 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46854 * 90.00264 * 15 13 11 17 17 H 1.48500 * 109.47264 * 210.00152 * 15 13 11 18 18 H 1.48502 * 109.47281 * 330.00409 * 15 13 11 19 19 C 1.46502 * 119.99719 * 79.73631 * 9 6 5 20 20 C 1.53000 * 109.47102 * 95.00085 * 19 9 6 21 21 O 1.42896 * 109.47310 * 64.99434 * 20 19 9 22 22 C 1.42900 * 114.00369 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47255 * 181.28248 * 3 2 1 24 24 C 1.53002 * 117.49729 * 242.22392 * 23 3 2 25 25 C 1.52991 * 117.49994 * 173.55938 * 23 3 2 26 26 H 1.08996 * 109.47409 * 174.94068 * 1 2 3 27 27 H 1.09002 * 109.47090 * 54.93780 * 1 2 3 28 28 H 1.08998 * 109.46669 * 294.93841 * 1 2 3 29 29 H 1.08998 * 109.46790 * 119.99842 * 2 1 3 30 30 H 1.08998 * 109.46698 * 239.99447 * 2 1 3 31 31 H 0.96999 * 120.00179 * 66.46490 * 5 3 2 32 32 H 1.09003 * 109.47445 * 215.87748 * 10 9 6 33 33 H 1.09000 * 109.47182 * 335.87445 * 10 9 6 34 34 H 0.97007 * 119.99579 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46869 * 214.99456 * 19 9 6 36 36 H 1.08992 * 109.47534 * 334.99872 * 19 9 6 37 37 H 1.08996 * 109.47498 * 184.99830 * 20 19 9 38 38 H 1.09003 * 109.46980 * 304.99704 * 20 19 9 39 39 H 1.09000 * 109.47139 * 60.00101 * 22 21 20 40 40 H 1.09000 * 109.47644 * 180.02562 * 22 21 20 41 41 H 1.09006 * 109.47130 * 300.00614 * 22 21 20 42 42 H 1.09004 * 115.54654 * 27.88451 * 23 3 2 43 43 H 1.09000 * 117.50215 * 359.97438 * 24 23 3 44 44 H 1.08992 * 117.49835 * 145.02016 * 24 23 3 45 45 H 1.09000 * 117.50177 * 214.97276 * 25 23 3 46 46 H 1.08999 * 117.50464 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6581 1.9628 -0.8784 5 7 1.5771 2.1241 1.2113 6 16 0.4947 3.3723 1.0966 7 8 -0.4967 2.9593 0.1663 8 8 0.1948 3.7669 2.4284 9 7 1.2887 4.6470 0.3988 10 6 1.7971 5.7387 1.2331 11 6 3.2507 5.4955 1.5478 12 1 3.7673 4.6590 1.1009 13 6 3.9209 6.3409 2.4063 14 7 5.1893 6.1284 2.6813 15 14 3.0275 7.7881 3.1789 16 1 2.4209 7.3650 4.4667 17 1 3.9912 8.8909 3.4244 18 1 1.9601 8.2587 2.2599 19 6 1.4828 4.6830 -1.0528 20 6 0.3619 5.5013 -1.6970 21 8 0.4582 6.8611 -1.2688 22 6 -0.5485 7.7154 -1.8155 23 6 3.5697 1.4425 -0.0323 24 6 4.3014 2.0661 1.1580 25 6 4.2729 2.7922 -0.1893 26 1 -0.3634 -1.0236 -0.0906 27 1 -0.3633 0.5904 -0.8412 28 1 -0.3632 0.4333 0.9319 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.9046 1.8444 2.0805 32 1 1.6941 6.6830 0.6984 33 1 1.2269 5.7827 2.1610 34 1 5.6610 6.7234 3.2850 35 1 2.4446 5.1430 -1.2795 36 1 1.4638 3.6672 -1.4473 37 1 0.4553 5.4545 -2.7820 38 1 -0.6037 5.0936 -1.3976 39 1 -1.5327 7.3536 -1.5182 40 1 -0.4060 8.7298 -1.4427 41 1 -0.4744 7.7146 -2.9030 42 1 4.0299 0.5768 -0.5085 43 1 3.6930 2.4766 1.9639 44 1 5.2431 1.6109 1.4645 45 1 5.1960 2.8144 -0.7685 46 1 3.6459 3.6802 -0.2692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594856760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = -115.896437 kcal Electronic energy + Delta-G solvation = -28219.278419 eV Core-core repulsion = 24464.206520 eV Total energy + Delta-G solvation = -3755.071899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64418 -39.01285 -38.23590 -36.97652 -36.85912 -35.37305 -34.43737 -32.50399 -31.30896 -28.77577 -27.61158 -26.99585 -24.35236 -23.31081 -23.06310 -22.47914 -21.20406 -20.35218 -18.99638 -18.73590 -18.35528 -17.55847 -17.07750 -16.85463 -16.48773 -16.34941 -15.94859 -15.70954 -15.30668 -15.13971 -14.86001 -14.41280 -14.04342 -13.85722 -13.63025 -13.48837 -13.41236 -13.28079 -13.13684 -12.98134 -12.88624 -12.70324 -12.49454 -12.44231 -12.17759 -12.12922 -11.98856 -11.91899 -11.79758 -11.62870 -11.37143 -10.91365 -10.79608 -10.65600 -10.50623 -10.25991 -9.65245 -8.15580 -6.15005 -0.25198 1.35904 1.40379 1.48636 2.01551 2.42623 2.63239 2.94520 3.08202 3.19529 3.43932 3.72084 3.89040 4.08858 4.18326 4.19871 4.34440 4.38041 4.41351 4.46121 4.52092 4.56243 4.58533 4.61824 4.77448 4.79853 4.86845 4.93910 5.03682 5.06198 5.09180 5.20805 5.23932 5.27441 5.43874 5.47531 5.52395 5.55267 5.57671 5.63114 5.82957 6.20580 6.38634 6.47063 6.99215 7.48375 8.97036 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.007201 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.616063 B = 3887.669834 C = 5108.409120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.179 3.821 4 H 0.091 0.909 5 N -1.110 6.110 6 S 2.792 3.208 7 O -0.991 6.991 8 O -1.023 7.023 9 N -0.983 5.983 10 C 0.228 3.772 11 C -0.539 4.539 12 H 0.105 0.895 13 C 0.029 3.971 14 N -0.931 5.931 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.252 1.252 19 C 0.124 3.876 20 C 0.040 3.960 21 O -0.409 6.409 22 C 0.024 3.976 23 C -0.144 4.144 24 C -0.176 4.176 25 C -0.192 4.192 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.418 0.582 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -9.554 -11.660 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.109 0.891 5 N -0.872 5.872 6 S 2.801 3.199 7 O -0.974 6.974 8 O -1.008 7.008 9 N -0.823 5.823 10 C 0.103 3.897 11 C -0.578 4.578 12 H 0.122 0.878 13 C -0.170 4.170 14 N -0.572 5.572 15 Si 0.730 3.270 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.176 1.176 19 C -0.001 4.001 20 C -0.038 4.038 21 O -0.328 6.328 22 C -0.072 4.072 23 C -0.164 4.164 24 C -0.214 4.214 25 C -0.229 4.229 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.254 0.746 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.006 -9.358 -11.344 16.744 hybrid contribution 0.328 1.103 1.177 1.646 sum -7.678 -8.255 -10.168 15.181 Atomic orbital electron populations 1.21805 0.96089 1.01881 1.01394 1.21855 0.95626 0.94466 1.04100 1.20584 0.92090 0.94635 0.85440 0.89099 1.55922 1.64889 1.50846 1.15551 1.01390 0.73976 0.72540 0.72040 1.93552 1.56702 1.82383 1.64794 1.93524 1.84703 1.82938 1.39628 1.57365 1.74379 1.36138 1.14370 1.19266 0.93441 0.87249 0.89753 1.22297 0.94998 1.14236 1.26290 0.87787 1.25399 0.95181 0.99445 0.96948 1.69993 1.10257 1.39463 1.37519 0.86378 0.79594 0.81245 0.79828 1.20803 1.20972 1.17630 1.21510 0.99560 1.00514 0.78558 1.23200 0.98949 0.82285 0.99332 1.87993 1.53207 1.19861 1.71785 1.22890 0.90804 0.94725 0.98794 1.22798 0.93281 0.97397 1.02911 1.22789 1.01653 1.04381 0.92550 1.23227 1.02942 0.96326 1.00413 0.91240 0.92488 0.95104 0.90772 0.88256 0.74615 0.93403 0.96475 0.93033 0.89537 0.87574 0.89631 0.93302 0.94028 0.89584 0.92213 0.84627 0.90239 0.89377 0.89095 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.80 71.98 0.63 -2.70 16 2 C -0.12 -2.26 5.59 30.59 0.17 -2.09 16 3 C 0.18 4.23 2.63 44.99 0.12 4.35 16 4 H 0.09 2.05 5.43 -2.38 -0.01 2.04 16 5 N -1.11 -33.39 3.83 -169.38 -0.65 -34.03 16 6 S 2.79 103.93 5.97 -56.49 -0.34 103.59 16 7 O -0.99 -35.37 15.12 -128.00 -1.93 -37.31 16 8 O -1.02 -47.35 16.54 -128.00 -2.12 -49.46 16 9 N -0.98 -37.67 2.56 -519.85 -1.33 -39.00 16 10 C 0.23 10.74 4.31 85.63 0.37 11.10 16 11 C -0.54 -28.22 9.89 25.60 0.25 -27.96 16 12 H 0.10 5.34 4.07 -2.91 -0.01 5.33 16 13 C 0.03 1.62 5.47 84.65 0.46 2.09 16 14 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 15 Si 0.90 44.59 27.37 68.60 1.88 46.46 16 16 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 18 H -0.25 -11.93 6.69 99.48 0.67 -11.26 16 19 C 0.12 3.82 4.45 86.38 0.38 4.20 16 20 C 0.04 1.15 6.28 71.98 0.45 1.60 16 21 O -0.41 -13.50 9.01 -148.98 -1.34 -14.84 16 22 C 0.02 0.58 11.01 113.37 1.25 1.83 16 23 C -0.14 -3.42 5.74 -10.79 -0.06 -3.48 16 24 C -0.18 -5.59 9.28 30.62 0.28 -5.30 16 25 C -0.19 -5.96 9.22 30.62 0.28 -5.68 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.32 7.73 -2.39 -0.02 1.30 16 28 H 0.03 0.78 7.60 -2.39 -0.02 0.76 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.42 12.38 7.64 -96.74 -0.74 11.64 16 32 H 0.05 2.30 5.99 -2.39 -0.01 2.29 16 33 H 0.02 0.88 6.01 -2.39 -0.01 0.87 16 34 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 35 H 0.09 2.81 7.62 -2.39 -0.02 2.79 16 36 H 0.11 2.59 5.66 -2.39 -0.01 2.57 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.43 7.84 -2.39 -0.02 1.41 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.14 2.42 8.06 -2.38 -0.02 2.40 16 43 H 0.08 2.95 6.22 -2.39 -0.01 2.94 16 44 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.10 3.55 3.94 -2.39 -0.01 3.54 16 Total: -1.00 -69.64 363.31 -0.73 -70.37 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.21 Total: 31.11 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.60 Total: -22.05 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -1.68 Total: -127.87 kcal Atomic # 8 Polarization: -96.22 SS G_CDS: -5.39 Total: -101.61 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.46 kcal Atomic # 16 Polarization: 103.93 SS G_CDS: -0.34 Total: 103.59 kcal Total: -69.64 -0.73 -70.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594856760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.531 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds