Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.85395 * 59.30231 * 16 14 13 18 18 C 1.54622 * 110.97085 * 295.50873 * 16 14 13 19 19 C 1.51338 * 104.17005 * 217.11102 * 18 16 14 20 20 O 1.21299 * 124.92750 * 196.22681 * 19 18 16 21 21 N 1.34419 * 110.12964 * 16.20360 * 19 18 16 22 22 C 1.40763 * 124.34937 * 180.46373 * 21 19 18 23 23 C 1.40260 * 126.07728 * 180.02562 * 22 21 19 24 24 N 1.30832 * 108.32968 * 179.97438 * 23 22 21 25 25 N 1.40067 * 108.37434 * 359.97438 * 24 23 22 26 26 C 1.46497 * 126.05370 * 180.02562 * 25 24 23 27 27 C 1.35753 * 126.08153 * 359.68728 * 22 21 19 28 28 C 1.46766 * 111.29871 * 0.43684 * 21 19 18 29 29 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 30 30 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 31 31 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 33 33 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 34 34 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 36 36 H 1.08997 * 110.48494 * 335.76648 * 18 16 14 37 37 H 1.09003 * 110.48364 * 98.40473 * 18 16 14 38 38 H 1.07994 * 125.83478 * 0.02802 * 23 22 21 39 39 H 1.09003 * 109.46871 * 89.97783 * 26 25 24 40 40 H 1.09007 * 109.46917 * 209.97399 * 26 25 24 41 41 H 1.08990 * 109.47068 * 329.97913 * 26 25 24 42 42 H 1.07999 * 126.21597 * 359.97438 * 27 22 21 43 43 H 1.09006 * 110.24792 * 223.98307 * 28 21 19 44 44 H 1.09000 * 110.24620 * 101.98862 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 1 0.7216 4.1516 2.8949 18 6 -0.0396 2.3179 3.8132 19 6 -1.2198 2.7820 4.6390 20 8 -1.4527 2.4307 5.7764 21 7 -1.9721 3.6404 3.9290 22 6 -3.1384 4.2623 4.4131 23 6 -3.9496 5.1614 3.7053 24 7 -4.9377 5.5237 4.4826 25 7 -4.7943 4.8698 5.7129 26 6 -5.6891 4.9960 6.8660 27 6 -3.6817 4.0937 5.6457 28 6 -1.4209 3.8463 2.5845 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8771 0.4812 -2.1123 35 1 2.2717 2.1233 1.9977 36 1 -0.2158 1.3142 3.4265 37 1 0.8752 2.3443 4.4054 38 1 -3.7869 5.4966 2.6917 39 1 -6.4745 4.2431 6.8004 40 1 -5.1209 4.8494 7.7846 41 1 -6.1375 5.9894 6.8707 42 1 -3.2980 3.4589 6.4307 43 1 -1.4395 4.9054 2.3272 44 1 -1.9865 3.2697 1.8525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599760175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = 19.835925 kcal Electronic energy + Delta-G solvation = -27060.724659 eV Core-core repulsion = 23208.387356 eV Total energy + Delta-G solvation = -3852.337303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71743 -40.52078 -39.07911 -36.56465 -35.37503 -33.87899 -32.75445 -32.28140 -31.43396 -29.37800 -27.97109 -27.54971 -26.70391 -23.90604 -22.62263 -22.23722 -21.13189 -20.31408 -19.63897 -19.51710 -17.96740 -17.57859 -16.71525 -16.26534 -15.81293 -15.70704 -15.38200 -15.13730 -14.82494 -14.68175 -14.18380 -13.87362 -13.72759 -13.57859 -13.39410 -13.27312 -12.88877 -12.86573 -12.71271 -12.32753 -12.03450 -11.83075 -11.67392 -11.46664 -11.15597 -11.10329 -10.95891 -10.68198 -10.39009 -10.12061 -9.98391 -9.68142 -9.62532 -9.30472 -9.22455 -8.81148 -8.18784 -7.83868 -6.25928 -4.29061 1.54208 2.06687 2.08076 2.81045 2.90014 3.00199 3.19858 3.32319 3.35790 3.65384 4.09625 4.17586 4.26800 4.38054 4.67617 4.75823 4.81090 4.82155 4.88756 5.06211 5.07653 5.24321 5.29151 5.35802 5.42848 5.47451 5.61280 5.80059 5.90126 5.92692 5.96492 6.10933 6.52172 6.58191 6.63796 6.72371 6.76456 6.86756 6.88092 7.16366 7.21757 7.38608 7.43629 7.94256 8.04951 8.42581 8.67863 8.79793 9.34334 10.85994 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.002694 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.226597 B =10392.359566 C =10636.551435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.294 1.294 13 N -0.694 5.694 14 C 0.515 3.485 15 O -0.543 6.543 16 C -0.125 4.125 17 H 0.118 0.882 18 C -0.140 4.140 19 C 0.519 3.481 20 O -0.528 6.528 21 N -0.534 5.534 22 C 0.011 3.989 23 C 0.040 3.960 24 N -0.282 5.282 25 N -0.376 5.376 26 C 0.108 3.892 27 C 0.037 3.963 28 C 0.118 3.882 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.268 0.732 35 H 0.397 0.603 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.188 0.812 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.189 0.811 43 H 0.089 0.911 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 6.666 13.795 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.184 1.184 12 H -0.222 1.222 13 N -0.341 5.341 14 C 0.298 3.702 15 O -0.422 6.422 16 C -0.147 4.147 17 H 0.136 0.864 18 C -0.180 4.180 19 C 0.308 3.692 20 O -0.404 6.404 21 N -0.260 5.260 22 C -0.091 4.091 23 C -0.147 4.147 24 N -0.104 5.104 25 N -0.162 5.162 26 C -0.034 4.034 27 C -0.110 4.110 28 C -0.004 4.004 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.205 0.795 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.206 0.794 43 H 0.107 0.893 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.383 7.126 13.833 24.085 hybrid contribution 0.769 -1.008 -0.539 1.378 sum -17.614 6.118 13.294 22.900 Atomic orbital electron populations 1.21876 0.96939 0.99135 1.02155 1.22298 0.94320 0.99941 1.01266 1.19187 0.95721 0.88510 0.82661 0.93157 1.21034 0.88538 1.39999 1.07907 0.90128 1.24838 0.94862 0.95119 0.97683 1.69866 1.08698 1.44318 1.29839 0.86909 0.80944 0.79964 0.80942 1.20253 1.18428 1.22174 1.46147 1.14529 1.55309 1.18117 1.19800 0.82882 0.79336 0.88142 1.90694 1.51415 1.59934 1.40157 1.22291 0.97931 0.99593 0.94869 0.86370 1.22314 0.98614 1.00867 0.96246 1.20919 0.84281 0.77966 0.86068 1.90654 1.73790 1.58596 1.17380 1.45241 1.22596 1.42902 1.15257 1.17552 0.92820 1.04183 0.94581 1.23702 0.92629 0.97894 1.00513 1.77288 1.22412 1.19378 0.91272 1.48331 1.21068 1.35035 1.11770 1.21842 0.93103 1.04119 0.84307 1.22456 0.90027 0.99337 0.99166 1.22101 0.92745 1.03138 0.82455 0.93072 0.92807 0.94929 0.92712 0.92200 0.92235 0.76978 0.86813 0.86643 0.79467 0.90715 0.89339 0.89207 0.79420 0.89256 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.51 37.16 0.32 -2.35 16 2 C -0.14 -2.88 5.11 -26.73 -0.14 -3.02 16 3 C 0.24 5.27 1.83 -69.08 -0.13 5.14 16 4 H 0.05 1.22 6.63 -51.93 -0.34 0.87 16 5 C -0.54 -13.66 9.31 -34.44 -0.32 -13.98 16 6 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 9 Si 0.88 20.94 24.41 -169.99 -4.15 16.79 16 10 H -0.28 -6.37 6.83 56.52 0.39 -5.99 16 11 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.69 -11.81 5.01 -54.93 -0.28 -12.09 16 14 C 0.51 7.90 5.63 -10.99 -0.06 7.84 16 15 O -0.54 -10.03 12.67 5.56 0.07 -9.96 16 16 C -0.12 -1.36 3.54 -90.14 -0.32 -1.68 16 17 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.14 -1.47 6.40 -26.72 -0.17 -1.64 16 19 C 0.52 6.58 7.98 -10.83 -0.09 6.49 16 20 O -0.53 -7.96 15.64 5.54 0.09 -7.87 16 21 N -0.53 -6.29 3.16 -112.45 -0.36 -6.65 16 22 C 0.01 0.13 6.80 -83.88 -0.57 -0.44 16 23 C 0.04 0.45 11.53 -17.22 -0.20 0.25 16 24 N -0.28 -3.36 12.56 30.70 0.39 -2.97 16 25 N -0.38 -3.91 4.04 -67.82 -0.27 -4.18 16 26 C 0.11 0.61 11.48 59.85 0.69 1.30 16 27 C 0.04 0.42 10.69 -16.68 -0.18 0.25 16 28 C 0.12 1.26 6.26 -3.12 -0.02 1.24 16 29 H 0.05 0.90 5.64 -51.93 -0.29 0.60 16 30 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.21 3.22 -51.93 -0.17 1.05 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.40 5.88 8.54 -40.82 -0.35 5.53 16 36 H 0.11 1.24 7.89 -51.93 -0.41 0.83 16 37 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.19 2.12 6.51 -52.49 -0.34 1.78 16 43 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 44 H 0.10 1.21 7.01 -51.93 -0.36 0.85 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -33.23 355.20 -5.75 -38.98 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.08 Total: 5.97 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.28 Total: 1.43 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.25 Total: -50.69 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.16 Total: -17.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.15 Total: 16.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.23 -5.75 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.813 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds