Wall clock time and date at job start Tue Mar 31 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.85395 * 59.30231 * 16 14 13 18 18 C 1.54622 * 110.97085 * 295.50873 * 16 14 13 19 19 C 1.51338 * 104.17005 * 217.11102 * 18 16 14 20 20 O 1.21299 * 124.92750 * 196.22681 * 19 18 16 21 21 N 1.34419 * 110.12964 * 16.20360 * 19 18 16 22 22 C 1.40763 * 124.34937 * 180.46373 * 21 19 18 23 23 C 1.40260 * 126.07728 * 180.02562 * 22 21 19 24 24 N 1.30832 * 108.32968 * 179.97438 * 23 22 21 25 25 N 1.40067 * 108.37434 * 359.97438 * 24 23 22 26 26 C 1.46497 * 126.05370 * 180.02562 * 25 24 23 27 27 C 1.35753 * 126.08153 * 359.68728 * 22 21 19 28 28 C 1.46766 * 111.29871 * 0.43684 * 21 19 18 29 29 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 30 30 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 31 31 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 33 33 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 34 34 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 36 36 H 1.08997 * 110.48494 * 335.76648 * 18 16 14 37 37 H 1.09003 * 110.48364 * 98.40473 * 18 16 14 38 38 H 1.07994 * 125.83478 * 0.02802 * 23 22 21 39 39 H 1.09003 * 109.46871 * 89.97783 * 26 25 24 40 40 H 1.09007 * 109.46917 * 209.97399 * 26 25 24 41 41 H 1.08990 * 109.47068 * 329.97913 * 26 25 24 42 42 H 1.07999 * 126.21597 * 359.97438 * 27 22 21 43 43 H 1.09006 * 110.24792 * 223.98307 * 28 21 19 44 44 H 1.09000 * 110.24620 * 101.98862 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 1 0.7216 4.1516 2.8949 18 6 -0.0396 2.3179 3.8132 19 6 -1.2198 2.7820 4.6390 20 8 -1.4527 2.4307 5.7764 21 7 -1.9721 3.6404 3.9290 22 6 -3.1384 4.2623 4.4131 23 6 -3.9496 5.1614 3.7053 24 7 -4.9377 5.5237 4.4826 25 7 -4.7943 4.8698 5.7129 26 6 -5.6891 4.9960 6.8660 27 6 -3.6817 4.0937 5.6457 28 6 -1.4209 3.8463 2.5845 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8771 0.4812 -2.1123 35 1 2.2717 2.1233 1.9977 36 1 -0.2158 1.3142 3.4265 37 1 0.8752 2.3443 4.4054 38 1 -3.7869 5.4966 2.6917 39 1 -6.4745 4.2431 6.8004 40 1 -5.1209 4.8494 7.7846 41 1 -6.1375 5.9894 6.8707 42 1 -3.2980 3.4589 6.4307 43 1 -1.4395 4.9054 2.3272 44 1 -1.9865 3.2697 1.8525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599760175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:53 Heat of formation + Delta-G solvation = -4.106936 kcal Electronic energy + Delta-G solvation = -27061.762900 eV Core-core repulsion = 23208.387356 eV Total energy + Delta-G solvation = -3853.375543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58003 -41.51095 -40.31298 -37.67525 -36.87575 -34.74024 -34.31174 -33.55565 -32.79263 -30.26825 -29.32017 -28.81041 -27.39935 -25.17757 -24.20375 -23.07964 -22.27872 -21.54959 -20.94254 -20.43003 -19.21509 -18.62065 -18.08578 -17.57021 -17.08156 -16.74205 -16.50496 -16.07255 -16.01622 -15.78847 -15.45390 -15.09863 -14.80392 -14.73462 -14.53731 -14.37277 -13.94373 -13.84071 -13.66743 -13.53220 -13.43328 -13.32836 -12.97980 -12.73563 -12.53637 -12.39363 -12.26430 -11.97286 -11.80670 -11.36263 -11.26888 -11.17422 -11.09586 -10.81968 -10.56476 -10.46352 -9.70695 -8.70667 -8.33714 -6.38423 0.70218 1.17235 1.30683 1.34876 1.39163 1.47660 1.76148 1.97861 2.01638 2.29507 2.45133 3.02867 3.17239 3.30388 3.66289 3.83328 3.87656 3.93559 4.22775 4.25982 4.29909 4.39046 4.41547 4.43360 4.53547 4.55497 4.64689 4.66926 4.68304 4.80571 4.91637 4.94664 5.08492 5.11857 5.18416 5.28196 5.46922 5.58436 5.70888 5.72135 5.90758 6.02941 6.18590 6.56883 6.65343 6.93391 7.00939 7.24615 7.50782 8.81280 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.002694 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.226597 B =10392.359566 C =10636.551435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.027 0.973 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.934 3.066 10 H -0.264 1.264 11 H -0.256 1.256 12 H -0.298 1.298 13 N -0.695 5.695 14 C 0.519 3.481 15 O -0.572 6.572 16 C -0.109 4.109 17 H 0.148 0.852 18 C -0.132 4.132 19 C 0.513 3.487 20 O -0.557 6.557 21 N -0.530 5.530 22 C -0.012 4.012 23 C 0.039 3.961 24 N -0.304 5.304 25 N -0.375 5.375 26 C 0.096 3.904 27 C 0.033 3.967 28 C 0.120 3.880 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.409 0.591 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.208 0.792 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.188 0.812 43 H 0.111 0.889 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 6.908 14.772 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.044 0.956 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.180 1.180 12 H -0.226 1.226 13 N -0.343 5.343 14 C 0.305 3.695 15 O -0.452 6.452 16 C -0.130 4.130 17 H 0.165 0.835 18 C -0.173 4.173 19 C 0.303 3.697 20 O -0.436 6.436 21 N -0.255 5.255 22 C -0.114 4.114 23 C -0.148 4.148 24 N -0.126 5.126 25 N -0.160 5.160 26 C -0.043 4.043 27 C -0.115 4.115 28 C -0.002 4.002 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.225 0.775 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.205 0.795 43 H 0.129 0.871 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.940 7.391 14.839 25.931 hybrid contribution 1.180 -1.015 -0.749 1.727 sum -18.760 6.376 14.090 24.313 Atomic orbital electron populations 1.21769 0.95132 1.00425 1.01807 1.22222 0.95862 0.98676 1.00995 1.18771 0.93001 0.89577 0.84128 0.95566 1.21325 0.90552 1.38114 1.06721 0.92257 1.25537 0.95616 0.96060 0.99916 1.69981 1.10304 1.46334 1.30821 0.86072 0.79514 0.79849 0.78359 1.19011 1.18038 1.22613 1.45942 1.15731 1.55681 1.16968 1.20391 0.81614 0.78303 0.89236 1.90692 1.52062 1.60705 1.41763 1.22184 0.98629 1.00011 0.92204 0.83465 1.22323 0.98753 1.00379 0.95801 1.21244 0.84767 0.77830 0.85880 1.90638 1.74623 1.59665 1.18663 1.45272 1.22425 1.42478 1.15329 1.17810 0.93389 1.05082 0.95154 1.24026 0.92073 0.97402 1.01269 1.77246 1.23043 1.20224 0.92131 1.48724 1.21039 1.34102 1.12177 1.22219 0.93243 1.05188 0.83668 1.22550 0.90421 0.99348 0.99149 1.22121 0.92167 1.04264 0.81665 0.92248 0.94316 0.92801 0.94206 0.91206 0.92268 0.75572 0.86986 0.84395 0.77501 0.89477 0.87280 0.88219 0.79495 0.87115 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.51 71.98 0.61 -4.07 16 2 C -0.14 -5.51 5.11 30.59 0.16 -5.35 16 3 C 0.25 10.65 1.83 44.25 0.08 10.73 16 4 H 0.03 1.26 6.63 -2.39 -0.02 1.25 16 5 C -0.53 -26.96 9.31 25.60 0.24 -26.72 16 6 H 0.06 3.21 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.53 5.45 84.66 0.46 1.99 16 8 N -0.94 -54.59 13.96 21.45 0.30 -54.29 16 9 Si 0.93 43.23 24.41 68.60 1.67 44.91 16 10 H -0.26 -11.62 6.83 99.48 0.68 -10.94 16 11 H -0.26 -11.57 6.53 99.48 0.65 -10.92 16 12 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 13 N -0.69 -22.49 5.01 -446.09 -2.23 -24.72 16 14 C 0.52 14.82 5.63 87.66 0.49 15.32 16 15 O -0.57 -20.23 12.67 -3.04 -0.04 -20.27 16 16 C -0.11 -2.06 3.54 -10.48 -0.04 -2.09 16 17 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 18 C -0.13 -2.43 6.40 30.60 0.20 -2.23 16 19 C 0.51 12.08 7.98 87.92 0.70 12.78 16 20 O -0.56 -16.16 15.64 -3.09 -0.05 -16.20 16 21 N -0.53 -11.51 3.16 -628.28 -1.99 -13.49 16 22 C -0.01 -0.27 6.80 37.62 0.26 -0.01 16 23 C 0.04 0.81 11.53 85.33 0.98 1.80 16 24 N -0.30 -6.85 12.56 -56.77 -0.71 -7.56 16 25 N -0.37 -7.27 4.04 -368.48 -1.49 -8.76 16 26 C 0.10 0.93 11.48 127.77 1.47 2.39 16 27 C 0.03 0.73 10.69 83.50 0.89 1.62 16 28 C 0.12 2.28 6.26 86.83 0.54 2.83 16 29 H 0.06 1.95 5.64 -2.39 -0.01 1.94 16 30 H 0.04 1.46 7.85 -2.39 -0.02 1.44 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.70 3.22 -2.39 -0.01 1.69 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 35 H 0.41 11.31 8.54 -92.71 -0.79 10.52 16 36 H 0.11 2.16 7.89 -2.39 -0.02 2.14 16 37 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.19 4.09 6.51 -2.91 -0.02 4.07 16 43 H 0.11 1.66 8.13 -2.38 -0.02 1.64 16 44 H 0.09 1.95 7.01 -2.39 -0.02 1.94 16 Total: -1.00 -72.13 355.20 2.67 -69.46 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.16 Total: 21.97 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.05 Total: 8.97 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -6.12 Total: -108.83 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.09 Total: -36.47 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.67 Total: 44.91 kcal Total: -72.13 2.67 -69.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.348 kcal (2) G-P(sol) polarization free energy of solvation -72.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds