Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00387 * 2 1 4 4 C 1.52778 * 109.42355 * 187.11454 * 3 2 1 5 5 N 1.47083 * 108.76579 * 306.42007 * 4 3 2 6 6 S 1.65594 * 120.88157 * 231.12250 * 5 4 3 7 7 O 1.42101 * 104.27582 * 134.14939 * 6 5 4 8 8 O 1.42091 * 104.28028 * 6.29170 * 6 5 4 9 9 C 1.81403 * 104.45081 * 250.21897 * 6 5 4 10 10 C 1.53002 * 109.47284 * 175.79914 * 9 6 5 11 11 C 1.53004 * 109.46620 * 300.00061 * 10 9 6 12 12 C 1.52998 * 109.47186 * 60.00033 * 10 9 6 13 13 C 1.50697 * 109.46860 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00544 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99563 * 180.02562 * 13 10 9 16 16 N 1.31520 * 120.00259 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99921 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47441 * 59.99951 * 17 15 13 19 19 H 1.48502 * 109.47357 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47165 * 299.99474 * 17 15 13 21 21 C 1.47080 * 118.23307 * 50.86058 * 5 4 3 22 22 H 1.08994 * 109.63357 * 68.98632 * 21 5 4 23 23 C 1.53005 * 109.62635 * 189.37639 * 21 5 4 24 24 O 1.42892 * 109.47011 * 71.69586 * 23 21 5 25 25 C 1.46895 * 111.00091 * 124.30322 * 2 1 3 26 26 H 1.09001 * 109.46825 * 295.70287 * 1 2 3 27 27 H 1.09004 * 109.46950 * 55.69718 * 1 2 3 28 28 H 1.08993 * 109.47404 * 175.69938 * 1 2 3 29 29 H 1.09004 * 109.49190 * 307.21816 * 3 2 1 30 30 H 1.09000 * 109.48636 * 67.26305 * 3 2 1 31 31 H 1.09002 * 109.55586 * 186.61398 * 4 3 2 32 32 H 1.09002 * 109.46020 * 66.18327 * 4 3 2 33 33 H 1.08999 * 109.47043 * 55.79345 * 9 6 5 34 34 H 1.09002 * 109.47224 * 295.80280 * 9 6 5 35 35 H 1.09001 * 109.47192 * 60.00231 * 11 10 9 36 36 H 1.09002 * 109.46425 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47145 * 299.99619 * 11 10 9 38 38 H 1.08997 * 109.47095 * 59.99651 * 12 10 9 39 39 H 1.08992 * 109.47025 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47266 * 300.00161 * 12 10 9 41 41 H 0.96995 * 119.99643 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.46826 * 191.69740 * 23 21 5 43 43 H 1.08999 * 109.46766 * 311.69149 * 23 21 5 44 44 H 0.96708 * 113.99770 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.49755 * 52.78327 * 25 2 1 46 46 H 1.09002 * 109.51798 * 292.71841 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3715 0.0000 4 6 3.5124 1.3333 -0.1785 5 7 4.0870 0.4460 0.8442 6 16 5.3386 0.9525 1.8029 7 8 4.9595 0.5547 3.1133 8 8 5.5004 2.3249 1.4720 9 6 6.7649 -0.0123 1.2324 10 6 8.0204 0.4437 1.9786 11 6 8.2661 1.9286 1.7034 12 6 7.8272 0.2285 3.4810 13 6 9.2054 -0.3574 1.5041 14 1 9.0760 -1.1162 0.7466 15 6 10.4547 -0.1224 2.0381 16 7 10.6123 0.8013 2.9610 17 14 11.9237 -1.1149 1.4495 18 1 12.1113 -0.9044 -0.0085 19 1 13.1423 -0.6724 2.1738 20 1 11.6856 -2.5564 1.7150 21 6 3.5164 -0.9010 0.9967 22 1 3.7591 -1.5028 0.1210 23 6 4.0907 -1.5634 2.2507 24 8 3.5420 -0.9390 3.4130 25 6 1.9954 -0.7729 1.1328 26 1 -0.3633 0.4457 0.9260 27 1 -0.3633 0.5792 -0.8490 28 1 -0.3634 -1.0247 -0.0771 29 1 1.5457 1.9338 -0.8183 30 1 1.7551 1.8533 0.9477 31 1 3.9189 2.3379 -0.0616 32 1 3.7518 0.9515 -1.1710 33 1 6.9025 0.1410 0.1621 34 1 6.5898 -1.0701 1.4284 35 1 7.4090 2.5083 2.0462 36 1 9.1608 2.2533 2.2346 37 1 8.4038 2.0818 0.6331 38 1 7.6521 -0.8293 3.6769 39 1 8.7214 0.5537 4.0125 40 1 6.9702 0.8082 3.8238 41 1 11.4912 0.9668 3.3363 42 1 3.8340 -2.6228 2.2520 43 1 5.1750 -1.4523 2.2561 44 1 3.8622 -1.3095 4.2469 45 1 1.5457 -1.7657 1.1363 46 1 1.7555 -0.2618 2.0652 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -88.199319 kcal Electronic energy + Delta-G solvation = -28109.754601 eV Core-core repulsion = 24355.883739 eV Total energy + Delta-G solvation = -3753.870862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30077 -37.09065 -36.29754 -35.80242 -35.07498 -34.35470 -31.75463 -31.50518 -28.19341 -26.90238 -26.15169 -25.71124 -25.22201 -23.89065 -22.12512 -20.64273 -19.39724 -18.10090 -17.36527 -17.03191 -16.32944 -15.99087 -15.38376 -15.10604 -15.03011 -14.86564 -14.65978 -14.29009 -13.93030 -13.91337 -13.29476 -13.12691 -12.88976 -12.49329 -12.37230 -12.17725 -12.01476 -11.92526 -11.67401 -11.33580 -11.18012 -11.15866 -11.02269 -10.94852 -10.80713 -10.67271 -10.38973 -10.37224 -10.22322 -10.04137 -9.68980 -9.55215 -9.38822 -8.96227 -8.63332 -8.40217 -8.34574 -6.03689 -4.15885 0.93188 3.13165 3.26055 3.31726 3.33297 3.78869 4.32612 4.35171 4.48764 4.67998 4.77359 4.83224 5.08335 5.12229 5.20790 5.23165 5.29640 5.32034 5.40465 5.49573 5.51481 5.60697 5.66814 5.67730 5.77179 5.85634 5.94343 6.13540 6.18362 6.40856 6.69974 6.76350 6.79234 6.90727 6.91469 6.92305 7.07016 7.31428 7.50372 7.67090 7.97473 8.02593 8.09860 8.33155 8.82467 9.49524 10.97425 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.004153 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.090954 B = 6740.502695 C = 6887.233098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.044 3.956 4 C 0.121 3.879 5 N -1.004 6.004 6 S 2.585 3.415 7 O -0.929 6.929 8 O -0.968 6.968 9 C -0.591 4.591 10 C 0.084 3.916 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.503 4.503 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.163 3.837 22 H 0.089 0.911 23 C 0.045 3.955 24 O -0.526 6.526 25 C 0.053 3.947 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.034 0.966 36 H 0.093 0.907 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.377 0.623 45 H 0.079 0.921 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 -3.774 -4.465 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.086 4.086 4 C -0.005 4.005 5 N -0.841 5.841 6 S 2.684 3.316 7 O -0.919 6.919 8 O -0.959 6.959 9 C -0.723 4.723 10 C 0.082 3.918 11 C -0.224 4.224 12 C -0.216 4.216 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C 0.057 3.943 22 H 0.107 0.893 23 C -0.034 4.034 24 O -0.331 6.331 25 C -0.076 4.076 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.053 0.947 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.224 0.776 45 H 0.097 0.903 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.951 -2.883 -4.546 17.785 hybrid contribution 1.149 -1.099 0.214 1.604 sum -15.802 -3.982 -4.332 16.862 Atomic orbital electron populations 1.22341 0.87309 1.02110 1.00417 1.61903 1.07525 1.13802 1.43697 1.22374 0.95762 0.89369 1.01061 1.21403 0.92333 0.95209 0.91535 1.58141 1.50675 1.22200 1.53116 1.06024 0.74961 0.75369 0.75232 1.93677 1.79928 1.82993 1.35281 1.93482 1.85911 1.31798 1.84700 1.30750 1.17100 1.13102 1.11361 1.17896 0.88731 0.94002 0.91220 1.22309 1.03108 0.96351 1.00607 1.22211 1.01799 0.99275 0.98329 1.20919 0.91493 1.19431 1.22391 0.92447 1.24936 0.98704 0.95200 0.94856 1.69795 1.23344 1.31771 1.27273 0.86611 0.81857 0.80341 0.78895 1.20264 1.21174 1.20290 1.21067 0.93427 0.83370 0.96466 0.89277 1.22587 0.97857 0.96094 0.86884 1.86575 1.69019 1.62740 1.14798 1.22321 0.94224 0.98520 0.92513 0.95706 0.91418 0.91410 0.89802 0.94303 0.87967 0.91080 0.86622 0.86711 0.94677 0.88846 0.94709 0.94649 0.88658 0.95826 0.92700 0.92083 0.92998 0.77601 0.90292 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.58 60.06 0.58 0.81 16 2 N -0.54 -6.23 4.88 -242.90 -1.19 -7.41 16 3 C 0.04 0.52 5.60 -3.93 -0.02 0.50 16 4 C 0.12 1.62 6.62 -3.84 -0.03 1.60 16 5 N -1.00 -15.29 3.24 -106.45 -0.34 -15.64 16 6 S 2.59 49.01 3.85 -107.50 -0.41 48.60 16 7 O -0.93 -18.59 10.63 -67.59 -0.72 -19.31 16 8 O -0.97 -20.90 13.57 -57.54 -0.78 -21.68 16 9 C -0.59 -11.66 4.78 37.16 0.18 -11.49 16 10 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 11 C -0.17 -4.14 7.77 37.16 0.29 -3.86 16 12 C -0.16 -3.82 7.80 37.16 0.29 -3.53 16 13 C -0.50 -13.19 8.01 -34.44 -0.28 -13.46 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.16 2.13 3.51 -67.49 -0.24 1.89 16 22 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 23 C 0.05 0.59 5.91 37.16 0.22 0.81 16 24 O -0.53 -7.71 9.05 -60.59 -0.55 -8.26 16 25 C 0.05 0.65 4.74 -3.70 -0.02 0.63 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.45 6.59 -51.93 -0.34 1.11 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 34 H 0.11 2.04 6.09 -51.92 -0.32 1.72 16 35 H 0.03 0.84 5.27 -51.93 -0.27 0.57 16 36 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 40 H 0.02 0.53 5.66 -51.93 -0.29 0.24 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.75 4.02 -51.93 -0.21 0.54 16 44 H 0.38 4.50 9.12 45.56 0.42 4.91 16 45 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 46 H 0.06 0.82 7.19 -51.93 -0.37 0.44 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -31.85 345.07 -9.12 -40.97 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.63 Total: 8.07 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 0.80 Total: -22.52 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -1.01 Total: -46.62 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.05 Total: -49.25 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.41 Total: 48.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.85 -9.12 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.225 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds