Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00387 * 2 1 4 4 C 1.52778 * 109.42355 * 187.11454 * 3 2 1 5 5 N 1.47083 * 108.76579 * 306.42007 * 4 3 2 6 6 S 1.65594 * 120.88157 * 231.12250 * 5 4 3 7 7 O 1.42101 * 104.27582 * 134.14939 * 6 5 4 8 8 O 1.42091 * 104.28028 * 6.29170 * 6 5 4 9 9 C 1.81403 * 104.45081 * 250.21897 * 6 5 4 10 10 C 1.53002 * 109.47284 * 175.79914 * 9 6 5 11 11 C 1.53004 * 109.46620 * 300.00061 * 10 9 6 12 12 C 1.52998 * 109.47186 * 60.00033 * 10 9 6 13 13 C 1.50697 * 109.46860 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00544 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99563 * 180.02562 * 13 10 9 16 16 N 1.31520 * 120.00259 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99921 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47441 * 59.99951 * 17 15 13 19 19 H 1.48502 * 109.47357 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47165 * 299.99474 * 17 15 13 21 21 C 1.47080 * 118.23307 * 50.86058 * 5 4 3 22 22 H 1.08994 * 109.63357 * 68.98632 * 21 5 4 23 23 C 1.53005 * 109.62635 * 189.37639 * 21 5 4 24 24 O 1.42892 * 109.47011 * 71.69586 * 23 21 5 25 25 C 1.46895 * 111.00091 * 124.30322 * 2 1 3 26 26 H 1.09001 * 109.46825 * 295.70287 * 1 2 3 27 27 H 1.09004 * 109.46950 * 55.69718 * 1 2 3 28 28 H 1.08993 * 109.47404 * 175.69938 * 1 2 3 29 29 H 1.09004 * 109.49190 * 307.21816 * 3 2 1 30 30 H 1.09000 * 109.48636 * 67.26305 * 3 2 1 31 31 H 1.09002 * 109.55586 * 186.61398 * 4 3 2 32 32 H 1.09002 * 109.46020 * 66.18327 * 4 3 2 33 33 H 1.08999 * 109.47043 * 55.79345 * 9 6 5 34 34 H 1.09002 * 109.47224 * 295.80280 * 9 6 5 35 35 H 1.09001 * 109.47192 * 60.00231 * 11 10 9 36 36 H 1.09002 * 109.46425 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47145 * 299.99619 * 11 10 9 38 38 H 1.08997 * 109.47095 * 59.99651 * 12 10 9 39 39 H 1.08992 * 109.47025 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47266 * 300.00161 * 12 10 9 41 41 H 0.96995 * 119.99643 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.46826 * 191.69740 * 23 21 5 43 43 H 1.08999 * 109.46766 * 311.69149 * 23 21 5 44 44 H 0.96708 * 113.99770 * 179.97438 * 24 23 21 45 45 H 1.08997 * 109.49755 * 52.78327 * 25 2 1 46 46 H 1.09002 * 109.51798 * 292.71841 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3715 0.0000 4 6 3.5124 1.3333 -0.1785 5 7 4.0870 0.4460 0.8442 6 16 5.3386 0.9525 1.8029 7 8 4.9595 0.5547 3.1133 8 8 5.5004 2.3249 1.4720 9 6 6.7649 -0.0123 1.2324 10 6 8.0204 0.4437 1.9786 11 6 8.2661 1.9286 1.7034 12 6 7.8272 0.2285 3.4810 13 6 9.2054 -0.3574 1.5041 14 1 9.0760 -1.1162 0.7466 15 6 10.4547 -0.1224 2.0381 16 7 10.6123 0.8013 2.9610 17 14 11.9237 -1.1149 1.4495 18 1 12.1113 -0.9044 -0.0085 19 1 13.1423 -0.6724 2.1738 20 1 11.6856 -2.5564 1.7150 21 6 3.5164 -0.9010 0.9967 22 1 3.7591 -1.5028 0.1210 23 6 4.0907 -1.5634 2.2507 24 8 3.5420 -0.9390 3.4130 25 6 1.9954 -0.7729 1.1328 26 1 -0.3633 0.4457 0.9260 27 1 -0.3633 0.5792 -0.8490 28 1 -0.3634 -1.0247 -0.0771 29 1 1.5457 1.9338 -0.8183 30 1 1.7551 1.8533 0.9477 31 1 3.9189 2.3379 -0.0616 32 1 3.7518 0.9515 -1.1710 33 1 6.9025 0.1410 0.1621 34 1 6.5898 -1.0701 1.4284 35 1 7.4090 2.5083 2.0462 36 1 9.1608 2.2533 2.2346 37 1 8.4038 2.0818 0.6331 38 1 7.6521 -0.8293 3.6769 39 1 8.7214 0.5537 4.0125 40 1 6.9702 0.8082 3.8238 41 1 11.4912 0.9668 3.3363 42 1 3.8340 -2.6228 2.2520 43 1 5.1750 -1.4523 2.2561 44 1 3.8622 -1.3095 4.2469 45 1 1.5457 -1.7657 1.1363 46 1 1.7555 -0.2618 2.0652 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -112.452650 kcal Electronic energy + Delta-G solvation = -28110.806304 eV Core-core repulsion = 24355.883739 eV Total energy + Delta-G solvation = -3754.922566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28572 -38.41937 -38.14402 -37.07601 -36.60007 -35.40195 -33.65060 -32.57982 -29.18712 -28.38883 -27.70439 -27.30912 -27.14685 -24.83289 -23.11352 -21.71147 -21.25200 -19.46024 -18.66134 -18.13457 -17.85856 -17.56887 -16.87104 -16.70802 -16.07834 -15.97258 -15.77047 -15.58581 -15.14554 -15.06177 -14.75342 -14.48971 -14.40917 -14.27095 -13.77125 -13.52119 -13.16866 -12.96421 -12.85185 -12.83941 -12.78731 -12.69665 -12.51681 -12.41359 -12.30129 -12.17955 -12.09372 -11.93059 -11.80603 -11.58523 -11.48201 -11.28653 -10.66607 -10.46242 -10.41026 -9.98303 -9.28102 -8.02981 -6.22030 -0.54905 1.44904 1.45632 1.52753 1.83567 2.44124 2.90267 2.99111 3.19048 3.32996 3.43142 3.69435 3.82693 4.02336 4.08275 4.19060 4.24003 4.29954 4.43650 4.48918 4.53063 4.63135 4.67414 4.69128 4.74138 4.76428 4.85402 4.89353 4.96067 5.00415 5.04622 5.07119 5.09132 5.20358 5.38454 5.49964 5.63736 5.69364 5.96684 6.01729 6.09747 6.11613 6.34189 6.82471 7.08654 7.46334 8.96489 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.004153 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.090954 B = 6740.502695 C = 6887.233098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.046 3.954 4 C 0.112 3.888 5 N -1.001 6.001 6 S 2.600 3.400 7 O -0.943 6.943 8 O -1.000 7.000 9 C -0.592 4.592 10 C 0.072 3.928 11 C -0.161 4.161 12 C -0.151 4.151 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.954 3.046 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.155 3.845 22 H 0.114 0.886 23 C 0.038 3.962 24 O -0.546 6.546 25 C 0.058 3.942 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.020 0.980 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.098 0.902 43 H 0.036 0.964 44 H 0.385 0.615 45 H 0.103 0.897 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 -5.628 -6.084 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.084 4.084 4 C -0.013 4.013 5 N -0.840 5.840 6 S 2.698 3.302 7 O -0.933 6.933 8 O -0.991 6.991 9 C -0.724 4.724 10 C 0.070 3.930 11 C -0.219 4.219 12 C -0.209 4.209 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.181 4.181 16 N -0.547 5.547 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.195 1.195 21 C 0.049 3.951 22 H 0.131 0.869 23 C -0.041 4.041 24 O -0.353 6.353 25 C -0.072 4.072 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.233 0.767 45 H 0.121 0.879 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.396 -4.746 -6.164 19.974 hybrid contribution 1.507 -0.523 0.705 1.744 sum -16.890 -5.269 -5.459 18.515 Atomic orbital electron populations 1.22430 0.85675 1.03340 1.00775 1.61960 1.08982 1.13129 1.43020 1.22379 0.94744 0.90103 1.01147 1.21622 0.93354 0.94412 0.91885 1.57859 1.49382 1.23633 1.53136 1.05330 0.75161 0.74459 0.75239 1.93662 1.80057 1.83011 1.36558 1.93432 1.86565 1.33856 1.85216 1.30679 1.15727 1.14560 1.11396 1.17887 0.90479 0.93080 0.91575 1.22240 1.02024 0.97517 1.00142 1.22100 1.00663 0.99712 0.98434 1.21267 0.92424 1.19672 1.22419 0.92031 1.25676 1.01259 0.96138 0.95041 1.69943 1.23651 1.32918 1.28154 0.85684 0.78719 0.79257 0.78400 1.19839 1.21313 1.19469 1.21436 0.94024 0.82213 0.97429 0.86861 1.22774 0.96792 0.98113 0.86412 1.86543 1.69260 1.63710 1.15755 1.22288 0.93661 0.99587 0.91656 0.96265 0.89966 0.89959 0.87191 0.96205 0.89328 0.88993 0.85566 0.84679 0.94487 0.91234 0.94704 0.93815 0.91224 0.95377 0.92930 0.88412 0.94648 0.76672 0.87874 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.58 127.69 1.22 1.60 16 2 N -0.55 -10.92 4.88 -922.40 -4.51 -15.42 16 3 C 0.05 1.00 5.60 86.23 0.48 1.48 16 4 C 0.11 2.84 6.62 86.19 0.57 3.41 16 5 N -1.00 -28.98 3.24 -490.70 -1.59 -30.57 16 6 S 2.60 97.53 3.85 -56.49 -0.22 97.32 16 7 O -0.94 -37.61 10.63 -118.04 -1.25 -38.86 16 8 O -1.00 -43.60 13.57 -127.65 -1.73 -45.33 16 9 C -0.59 -22.84 4.78 71.98 0.34 -22.49 16 10 C 0.07 3.48 0.52 -52.93 -0.03 3.45 16 11 C -0.16 -8.22 7.77 71.98 0.56 -7.66 16 12 C -0.15 -7.38 7.80 71.98 0.56 -6.82 16 13 C -0.52 -27.02 8.01 25.60 0.21 -26.82 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 15 C 0.02 0.97 5.15 84.65 0.44 1.40 16 16 N -0.91 -50.39 9.35 21.45 0.20 -50.19 16 17 Si 0.95 41.94 29.54 68.60 2.03 43.97 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 C 0.15 3.63 3.51 44.96 0.16 3.79 16 22 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 23 C 0.04 0.92 5.91 71.98 0.43 1.34 16 24 O -0.55 -15.42 9.05 -124.73 -1.13 -16.54 16 25 C 0.06 1.24 4.74 86.39 0.41 1.65 16 26 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 1.79 8.06 -2.38 -0.02 1.77 16 30 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 2.48 6.59 -2.39 -0.02 2.46 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 34 H 0.14 4.58 6.09 -2.39 -0.01 4.57 16 35 H 0.04 1.83 5.27 -2.39 -0.01 1.81 16 36 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 37 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 40 H 0.03 1.30 5.66 -2.39 -0.01 1.28 16 41 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 0.97 4.02 -2.39 -0.01 0.96 16 44 H 0.38 8.92 9.12 -74.05 -0.68 8.24 16 45 H 0.10 1.72 8.11 -2.39 -0.02 1.70 16 46 H 0.03 0.87 7.19 -2.39 -0.02 0.85 16 Total: -1.00 -68.52 345.07 -2.54 -71.07 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.31 Total: 30.23 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 5.35 Total: -45.67 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -5.89 Total: -96.18 kcal Atomic # 8 Polarization: -96.62 SS G_CDS: -4.11 Total: -100.74 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 97.53 SS G_CDS: -0.22 Total: 97.32 kcal Total: -68.52 -2.54 -71.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.387 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds