Wall clock time and date at job start Tue Mar 31 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47025 * 2 1 4 4 O 1.42898 * 109.49440 * 64.93544 * 3 2 1 5 5 C 1.53042 * 109.52061 * 304.85120 * 3 2 1 6 6 C 1.53036 * 109.53407 * 178.66743 * 5 3 2 7 7 C 1.52754 * 109.38581 * 61.24136 * 6 5 3 8 8 N 1.46927 * 109.00975 * 305.58848 * 7 6 5 9 9 S 1.65602 * 120.62902 * 233.58076 * 8 7 6 10 10 O 1.42108 * 106.39882 * 156.17723 * 9 8 7 11 11 O 1.42099 * 106.40433 * 23.26135 * 9 8 7 12 12 N 1.65592 * 107.22060 * 269.71798 * 9 8 7 13 13 C 1.46502 * 120.00079 * 270.00127 * 12 9 8 14 14 C 1.46501 * 119.99899 * 90.00248 * 12 9 8 15 15 H 1.08999 * 109.47204 * 0.02562 * 14 12 9 16 16 C 1.53009 * 109.47068 * 239.99931 * 14 12 9 17 17 C 1.50700 * 109.47217 * 120.00378 * 14 12 9 18 18 H 1.08005 * 120.00117 * 5.35137 * 17 14 12 19 19 C 1.37874 * 119.99976 * 185.35486 * 17 14 12 20 20 N 1.31513 * 119.99934 * 5.42663 * 19 17 14 21 21 Si 1.86802 * 120.00109 * 185.15064 * 19 17 14 22 22 H 1.48498 * 109.47137 * 84.99797 * 21 19 17 23 23 H 1.48501 * 109.47287 * 205.00205 * 21 19 17 24 24 H 1.48501 * 109.47112 * 325.00288 * 21 19 17 25 25 C 1.46924 * 118.73794 * 53.30531 * 8 7 6 26 26 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47389 * 300.00124 * 1 2 3 28 28 H 1.08993 * 109.47371 * 60.00663 * 1 2 3 29 29 H 1.08998 * 109.47389 * 239.99876 * 2 1 3 30 30 H 1.09003 * 109.47409 * 119.99360 * 2 1 3 31 31 H 0.96697 * 113.99931 * 300.06139 * 4 3 2 32 32 H 1.08994 * 109.45990 * 298.68848 * 5 3 2 33 33 H 1.09001 * 109.45857 * 58.66420 * 5 3 2 34 34 H 1.09005 * 109.49441 * 181.31989 * 6 5 3 35 35 H 1.09004 * 109.49970 * 301.41078 * 6 5 3 36 36 H 1.09000 * 109.51526 * 185.70311 * 7 6 5 37 37 H 1.09005 * 109.43285 * 65.42131 * 7 6 5 38 38 H 1.09000 * 109.47365 * 269.99762 * 13 12 9 39 39 H 1.09000 * 109.47037 * 30.00249 * 13 12 9 40 40 H 1.09002 * 109.46986 * 150.00057 * 13 12 9 41 41 H 1.09002 * 109.47083 * 294.89274 * 16 14 12 42 42 H 1.09006 * 109.46832 * 54.89161 * 16 14 12 43 43 H 1.08998 * 109.47271 * 174.89119 * 16 14 12 44 44 H 0.97002 * 120.00032 * 179.72096 * 20 19 17 45 45 H 1.09000 * 109.58446 * 66.43288 * 25 8 7 46 46 H 1.09001 * 109.58674 * 186.86060 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.6609 2.0824 1.2202 5 6 1.4332 2.1995 -1.1837 6 6 1.9170 3.6512 -1.1650 7 6 3.4382 3.6806 -1.3004 8 7 4.0282 2.8340 -0.2544 9 16 5.1864 3.4360 0.7647 10 8 5.1401 2.6389 1.9402 11 8 5.0176 4.8469 0.7752 12 7 6.6571 3.1464 0.0609 13 6 7.3699 1.8974 0.3410 14 6 7.2455 4.1390 -0.8417 15 1 6.5760 4.9950 -0.9264 16 6 7.4519 3.5136 -2.2228 17 6 8.5734 4.5929 -0.2923 18 1 8.9827 4.1217 0.5891 19 6 9.2657 5.6098 -0.9149 20 7 8.7206 6.2555 -1.9226 21 14 10.9748 6.0755 -0.3220 22 1 11.9797 5.1906 -0.9641 23 1 11.2563 7.4881 -0.6835 24 1 11.0471 5.9181 1.1528 25 6 3.5667 1.4451 -0.1258 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.7055 2.1169 1.3659 32 1 1.7430 1.7255 -2.1150 33 1 0.3460 2.1782 -1.1095 34 1 1.4661 4.1957 -1.9947 35 1 1.6289 4.1186 -0.2233 36 1 3.7943 4.7044 -1.1859 37 1 3.7224 3.3003 -2.2816 38 1 8.0163 2.0345 1.2078 39 1 6.6492 1.1060 0.5466 40 1 7.9746 1.6226 -0.5233 41 1 8.1910 2.7154 -2.1534 42 1 6.5074 3.1040 -2.5809 43 1 7.8043 4.2757 -2.9178 44 1 9.2061 6.9736 -2.3580 45 1 3.8614 0.8789 -1.0093 46 1 4.0073 0.9944 0.7634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601508695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:12 Heat of formation + Delta-G solvation = -131.102960 kcal Electronic energy + Delta-G solvation = -27751.095859 eV Core-core repulsion = 23995.364555 eV Total energy + Delta-G solvation = -3755.731304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.70236 -36.62495 -36.08933 -35.76332 -35.06883 -33.12987 -32.50402 -31.87618 -29.36373 -29.12688 -25.55291 -25.13947 -25.02699 -23.66784 -21.75890 -20.64842 -20.08051 -18.27226 -17.32017 -16.80927 -16.62899 -16.30605 -15.67807 -15.32830 -14.81524 -14.69697 -14.47998 -14.18478 -13.83072 -13.42341 -13.19904 -12.90642 -12.86312 -12.74160 -12.49216 -12.03175 -11.93786 -11.77199 -11.68347 -11.66994 -11.44438 -11.38232 -11.19097 -11.15678 -10.97212 -10.94064 -10.88124 -10.78772 -10.48094 -10.33028 -10.22709 -9.95362 -9.81927 -9.24356 -8.74709 -8.41085 -7.92297 -6.05559 -4.09467 1.26352 3.30984 3.37438 3.41406 3.52829 4.08293 4.21781 4.43338 4.51595 4.57462 4.71459 4.88519 5.01183 5.04556 5.11481 5.27163 5.28860 5.36467 5.49047 5.50377 5.60595 5.66360 5.67570 5.73198 5.81200 5.86237 5.89037 5.96890 6.08122 6.17231 6.32525 6.33558 6.44142 6.63659 6.69138 6.77828 6.89237 7.00278 7.44547 7.64466 7.66476 7.81061 7.99717 8.30078 8.92698 9.55393 11.02317 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.004000 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.361276 B = 6998.850919 C = 7222.318145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C 0.121 3.879 4 O -0.545 6.545 5 C -0.143 4.143 6 C -0.128 4.128 7 C 0.120 3.880 8 N -1.002 6.002 9 S 2.780 3.220 10 O -0.990 6.990 11 O -0.972 6.972 12 N -0.993 5.993 13 C 0.111 3.889 14 C 0.266 3.734 15 H 0.063 0.937 16 C -0.141 4.141 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.136 3.864 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.368 0.632 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.263 0.737 45 H 0.077 0.923 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 -12.215 -1.701 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.189 4.189 3 C 0.079 3.921 4 O -0.351 6.351 5 C -0.180 4.180 6 C -0.167 4.167 7 C -0.005 4.005 8 N -0.840 5.840 9 S 2.791 3.209 10 O -0.974 6.974 11 O -0.956 6.956 12 N -0.835 5.835 13 C -0.036 4.036 14 C 0.163 3.837 15 H 0.081 0.919 16 C -0.200 4.200 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.009 3.991 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.215 0.785 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.066 -11.551 -0.931 19.007 hybrid contribution 0.422 -0.028 -0.285 0.510 sum -14.644 -11.579 -1.216 18.708 Atomic orbital electron populations 1.21843 0.95587 1.02072 1.01899 1.22177 0.96538 0.96937 1.03275 1.21555 0.95161 0.90681 0.84720 1.86688 1.27583 1.81027 1.39787 1.22220 1.00365 0.96723 0.98734 1.21721 0.96002 0.96204 1.02820 1.21282 0.93154 0.95601 0.90504 1.58270 1.55742 1.19636 1.50316 1.01994 0.72412 0.73239 0.73278 1.93521 1.87044 1.71647 1.45210 1.93576 1.85836 1.29794 1.86379 1.57837 1.34431 1.27668 1.63566 1.21118 0.96684 0.84343 1.01448 1.18726 0.94962 0.84971 0.85000 0.91910 1.22045 0.97571 1.00477 0.99952 1.21311 1.03692 1.18541 1.12549 0.91979 1.24913 0.98224 0.95507 0.95149 1.69915 1.37357 1.22541 1.22962 0.86545 0.84279 0.77552 0.79236 1.20588 1.21197 1.19891 1.21312 0.92007 0.83110 1.02636 0.92417 0.92646 0.92151 0.90841 0.90748 0.78465 0.90992 0.91366 0.91021 0.90875 0.88678 0.91759 0.93337 0.93520 0.91127 0.94518 0.96719 0.90506 0.92725 0.90503 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.22 37.15 0.34 -0.68 16 2 C -0.15 -1.24 5.23 -26.73 -0.14 -1.38 16 3 C 0.12 1.32 0.76 -90.50 -0.07 1.25 16 4 O -0.55 -6.90 12.17 -35.23 -0.43 -7.33 16 5 C -0.14 -1.35 4.45 -26.69 -0.12 -1.47 16 6 C -0.13 -1.49 5.92 -26.84 -0.16 -1.65 16 7 C 0.12 1.75 6.45 -3.94 -0.03 1.72 16 8 N -1.00 -16.25 3.29 -113.77 -0.37 -16.63 16 9 S 2.78 58.48 6.10 -107.50 -0.66 57.82 16 10 O -0.99 -22.09 15.80 -57.17 -0.90 -22.99 16 11 O -0.97 -23.97 15.28 -57.17 -0.87 -24.84 16 12 N -0.99 -21.29 3.12 -115.84 -0.36 -21.65 16 13 C 0.11 2.02 9.48 59.85 0.57 2.59 16 14 C 0.27 6.59 2.49 -69.08 -0.17 6.41 16 15 H 0.06 1.73 6.89 -51.93 -0.36 1.37 16 16 C -0.14 -3.13 8.84 37.16 0.33 -2.80 16 17 C -0.52 -14.27 8.34 -34.44 -0.29 -14.56 16 18 H 0.06 1.70 7.52 -52.48 -0.39 1.30 16 19 C 0.06 1.78 5.28 -17.82 -0.09 1.69 16 20 N -0.89 -25.11 12.00 55.43 0.66 -24.45 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.14 1.80 5.43 -3.71 -0.02 1.77 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 6.88 -51.93 -0.36 -0.02 16 28 H 0.06 0.36 6.32 -51.93 -0.33 0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.37 3.18 7.53 45.56 0.34 3.52 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 6.27 -51.93 -0.33 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.95 7.61 -51.93 -0.40 0.55 16 36 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 40 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 41 H 0.04 0.77 6.88 -51.93 -0.36 0.42 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 1.87 6.85 -51.93 -0.36 1.52 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.37 6.92 -51.93 -0.36 1.02 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -33.78 362.96 -9.26 -43.04 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.93 Total: 2.30 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 0.15 Total: -7.10 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.07 Total: -62.72 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -2.21 Total: -55.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.66 Total: 57.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.78 -9.26 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601508695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.064 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds