Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47025 * 2 1 4 4 O 1.42898 * 109.49440 * 64.93544 * 3 2 1 5 5 C 1.53042 * 109.52061 * 304.85120 * 3 2 1 6 6 C 1.53036 * 109.53407 * 178.66743 * 5 3 2 7 7 C 1.52754 * 109.38581 * 61.24136 * 6 5 3 8 8 N 1.46927 * 109.00975 * 305.58848 * 7 6 5 9 9 S 1.65602 * 120.62902 * 233.58076 * 8 7 6 10 10 O 1.42108 * 106.39882 * 156.17723 * 9 8 7 11 11 O 1.42099 * 106.40433 * 23.26135 * 9 8 7 12 12 N 1.65592 * 107.22060 * 269.71798 * 9 8 7 13 13 C 1.46502 * 120.00079 * 270.00127 * 12 9 8 14 14 C 1.46501 * 119.99899 * 90.00248 * 12 9 8 15 15 H 1.08999 * 109.47204 * 0.02562 * 14 12 9 16 16 C 1.53009 * 109.47068 * 239.99931 * 14 12 9 17 17 C 1.50700 * 109.47217 * 120.00378 * 14 12 9 18 18 H 1.08005 * 120.00117 * 5.35137 * 17 14 12 19 19 C 1.37874 * 119.99976 * 185.35486 * 17 14 12 20 20 N 1.31513 * 119.99934 * 5.42663 * 19 17 14 21 21 Si 1.86802 * 120.00109 * 185.15064 * 19 17 14 22 22 H 1.48498 * 109.47137 * 84.99797 * 21 19 17 23 23 H 1.48501 * 109.47287 * 205.00205 * 21 19 17 24 24 H 1.48501 * 109.47112 * 325.00288 * 21 19 17 25 25 C 1.46924 * 118.73794 * 53.30531 * 8 7 6 26 26 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47389 * 300.00124 * 1 2 3 28 28 H 1.08993 * 109.47371 * 60.00663 * 1 2 3 29 29 H 1.08998 * 109.47389 * 239.99876 * 2 1 3 30 30 H 1.09003 * 109.47409 * 119.99360 * 2 1 3 31 31 H 0.96697 * 113.99931 * 300.06139 * 4 3 2 32 32 H 1.08994 * 109.45990 * 298.68848 * 5 3 2 33 33 H 1.09001 * 109.45857 * 58.66420 * 5 3 2 34 34 H 1.09005 * 109.49441 * 181.31989 * 6 5 3 35 35 H 1.09004 * 109.49970 * 301.41078 * 6 5 3 36 36 H 1.09000 * 109.51526 * 185.70311 * 7 6 5 37 37 H 1.09005 * 109.43285 * 65.42131 * 7 6 5 38 38 H 1.09000 * 109.47365 * 269.99762 * 13 12 9 39 39 H 1.09000 * 109.47037 * 30.00249 * 13 12 9 40 40 H 1.09002 * 109.46986 * 150.00057 * 13 12 9 41 41 H 1.09002 * 109.47083 * 294.89274 * 16 14 12 42 42 H 1.09006 * 109.46832 * 54.89161 * 16 14 12 43 43 H 1.08998 * 109.47271 * 174.89119 * 16 14 12 44 44 H 0.97002 * 120.00032 * 179.72096 * 20 19 17 45 45 H 1.09000 * 109.58446 * 66.43288 * 25 8 7 46 46 H 1.09001 * 109.58674 * 186.86060 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.6609 2.0824 1.2202 5 6 1.4332 2.1995 -1.1837 6 6 1.9170 3.6512 -1.1650 7 6 3.4382 3.6806 -1.3004 8 7 4.0282 2.8340 -0.2544 9 16 5.1864 3.4360 0.7647 10 8 5.1401 2.6389 1.9402 11 8 5.0176 4.8469 0.7752 12 7 6.6571 3.1464 0.0609 13 6 7.3699 1.8974 0.3410 14 6 7.2455 4.1390 -0.8417 15 1 6.5760 4.9950 -0.9264 16 6 7.4519 3.5136 -2.2228 17 6 8.5734 4.5929 -0.2923 18 1 8.9827 4.1217 0.5891 19 6 9.2657 5.6098 -0.9149 20 7 8.7206 6.2555 -1.9226 21 14 10.9748 6.0755 -0.3220 22 1 11.9797 5.1906 -0.9641 23 1 11.2563 7.4881 -0.6835 24 1 11.0471 5.9181 1.1528 25 6 3.5667 1.4451 -0.1258 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.7055 2.1169 1.3659 32 1 1.7430 1.7255 -2.1150 33 1 0.3460 2.1782 -1.1095 34 1 1.4661 4.1957 -1.9947 35 1 1.6289 4.1186 -0.2233 36 1 3.7943 4.7044 -1.1859 37 1 3.7224 3.3003 -2.2816 38 1 8.0163 2.0345 1.2078 39 1 6.6492 1.1060 0.5466 40 1 7.9746 1.6226 -0.5233 41 1 8.1910 2.7154 -2.1534 42 1 6.5074 3.1040 -2.5809 43 1 7.8043 4.2757 -2.9178 44 1 9.2061 6.9736 -2.3580 45 1 3.8614 0.8789 -1.0093 46 1 4.0073 0.9944 0.7634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601508695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = -157.101713 kcal Electronic energy + Delta-G solvation = -27752.223250 eV Core-core repulsion = 23995.364555 eV Total energy + Delta-G solvation = -3756.858694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59566 -38.38765 -37.87523 -36.89292 -36.78504 -34.50548 -33.88966 -32.86715 -30.99542 -30.18881 -27.26142 -27.02040 -26.01504 -24.54794 -22.81111 -22.38514 -20.96327 -19.77212 -18.87112 -18.56713 -18.14393 -17.49546 -17.19058 -16.68573 -16.23923 -15.68512 -15.52453 -15.23425 -15.14466 -15.02952 -14.77223 -14.45936 -13.98622 -13.73561 -13.67687 -13.40205 -13.32806 -13.22841 -13.19339 -12.98466 -12.92968 -12.77203 -12.67868 -12.62646 -12.47909 -12.27735 -12.21996 -12.02704 -11.88040 -11.86588 -11.72070 -11.25234 -11.16973 -10.61333 -10.51080 -9.94113 -9.65337 -8.14329 -6.25520 -0.35809 1.41198 1.42835 1.52010 2.05288 2.42180 2.58897 3.15556 3.27771 3.36487 3.77853 3.82640 3.91301 4.03592 4.13309 4.15662 4.29864 4.47454 4.54207 4.64894 4.65507 4.73721 4.76127 4.79551 4.84545 4.92142 4.96417 4.98918 5.00382 5.10209 5.12717 5.15425 5.20267 5.21647 5.35750 5.43869 5.51729 5.56135 5.62242 5.77703 5.86779 6.11498 6.27759 6.81866 6.95313 7.42654 8.92277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.004000 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.361276 B = 6998.850919 C = 7222.318145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.144 4.144 3 C 0.118 3.882 4 O -0.575 6.575 5 C -0.136 4.136 6 C -0.125 4.125 7 C 0.112 3.888 8 N -0.994 5.994 9 S 2.789 3.211 10 O -1.009 7.009 11 O -1.019 7.019 12 N -0.999 5.999 13 C 0.104 3.896 14 C 0.271 3.729 15 H 0.026 0.974 16 C -0.126 4.126 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.019 3.981 20 N -0.914 5.914 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.277 1.277 25 C 0.122 3.878 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.383 0.617 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.265 0.735 45 H 0.109 0.891 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.755 -14.349 -2.977 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.076 3.924 4 O -0.384 6.384 5 C -0.173 4.173 6 C -0.165 4.165 7 C -0.013 4.013 8 N -0.835 5.835 9 S 2.801 3.199 10 O -0.993 6.993 11 O -1.003 7.003 12 N -0.841 5.841 13 C -0.041 4.041 14 C 0.167 3.833 15 H 0.044 0.956 16 C -0.185 4.185 17 C -0.582 4.582 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.553 5.553 21 Si 0.780 3.220 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.202 1.202 25 C -0.003 4.003 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.200 -13.707 -2.193 21.334 hybrid contribution 0.694 0.608 0.146 0.934 sum -15.506 -13.099 -2.047 20.401 Atomic orbital electron populations 1.21842 0.94089 1.02805 1.02469 1.22113 0.97754 0.94801 1.03563 1.21660 0.93450 0.92528 0.84741 1.86647 1.29252 1.81557 1.40918 1.22212 1.01733 0.94607 0.98749 1.21719 0.93627 0.98363 1.02744 1.21488 0.95227 0.93796 0.90744 1.57855 1.54376 1.21277 1.49958 1.01401 0.72905 0.72127 0.73508 1.93483 1.87452 1.71632 1.46706 1.93509 1.86546 1.33025 1.87207 1.57722 1.35180 1.28135 1.63034 1.21327 0.97451 0.83788 1.01572 1.18426 0.93036 0.85036 0.86787 0.95634 1.21820 0.99243 0.99789 0.97672 1.21642 1.05057 1.18984 1.12526 0.92752 1.25648 1.01628 0.95500 0.95375 1.70022 1.38589 1.22876 1.23801 0.85633 0.80391 0.77489 0.78500 1.19091 1.20877 1.20185 1.21736 0.94012 0.81116 1.03432 0.91640 0.92543 0.91130 0.89279 0.91789 0.76704 0.89144 0.88901 0.88708 0.92869 0.91902 0.89510 0.94371 0.90472 0.89932 0.93527 0.93800 0.92955 0.92602 0.87352 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.22 71.98 0.66 -0.81 16 2 C -0.14 -1.92 5.23 30.59 0.16 -1.76 16 3 C 0.12 2.27 0.76 -10.71 -0.01 2.27 16 4 O -0.58 -13.91 12.17 -148.98 -1.81 -15.72 16 5 C -0.14 -2.08 4.45 30.62 0.14 -1.94 16 6 C -0.13 -2.69 5.92 30.52 0.18 -2.51 16 7 C 0.11 3.19 6.45 86.22 0.56 3.75 16 8 N -0.99 -31.65 3.29 -513.86 -1.69 -33.35 16 9 S 2.79 120.17 6.10 -56.49 -0.34 119.83 16 10 O -1.01 -45.80 15.80 -128.00 -2.02 -47.82 16 11 O -1.02 -52.95 15.28 -128.00 -1.96 -54.91 16 12 N -1.00 -43.25 3.12 -520.42 -1.62 -44.87 16 13 C 0.10 3.73 9.48 127.77 1.21 4.94 16 14 C 0.27 13.69 2.49 44.25 0.11 13.80 16 15 H 0.03 1.49 6.89 -2.39 -0.02 1.47 16 16 C -0.13 -5.53 8.84 71.99 0.64 -4.90 16 17 C -0.54 -30.28 8.34 25.60 0.21 -30.06 16 18 H 0.05 3.03 7.52 -2.91 -0.02 3.01 16 19 C 0.02 1.04 5.28 84.65 0.45 1.49 16 20 N -0.91 -52.54 12.00 21.45 0.26 -52.28 16 21 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.12 2.99 5.43 86.36 0.47 3.46 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 0.53 6.88 -2.39 -0.02 0.51 16 28 H 0.07 0.54 6.32 -2.39 -0.02 0.53 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.38 6.06 7.53 -74.06 -0.56 5.51 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.02 6.27 -2.39 -0.01 1.00 16 34 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 35 H 0.05 1.35 7.61 -2.38 -0.02 1.33 16 36 H 0.06 2.19 6.91 -2.39 -0.02 2.18 16 37 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.04 1.42 8.09 -2.39 -0.02 1.40 16 39 H 0.08 2.26 7.79 -2.39 -0.02 2.24 16 40 H 0.08 2.73 6.53 -2.39 -0.02 2.72 16 41 H 0.05 1.91 6.88 -2.39 -0.02 1.90 16 42 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.05 2.56 6.85 -2.39 -0.02 2.54 16 44 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.08 2.21 6.92 -2.39 -0.02 2.20 16 Total: -1.00 -75.62 362.96 -1.98 -77.59 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.42 Total: 17.64 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.78 Total: -12.27 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -3.06 Total: -130.51 kcal Atomic # 8 Polarization: -112.66 SS G_CDS: -5.79 Total: -118.45 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 120.17 SS G_CDS: -0.34 Total: 119.83 kcal Total: -75.62 -1.98 -77.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601508695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.507 kcal (2) G-P(sol) polarization free energy of solvation -75.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds