Wall clock time and date at job start Tue Mar 31 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47318 * 2 1 4 4 H 1.09006 * 109.51638 * 54.91942 * 3 2 1 5 5 C 1.53037 * 109.49825 * 174.99934 * 3 2 1 6 6 C 1.53046 * 109.52219 * 181.31019 * 5 3 2 7 7 C 1.53193 * 109.31549 * 298.64019 * 6 5 3 8 8 N 1.46931 * 108.77143 * 54.63694 * 7 6 5 9 9 C 1.34777 * 120.62935 * 126.40920 * 8 7 6 10 10 O 1.21368 * 119.99937 * 172.90435 * 9 8 7 11 11 C 1.49309 * 120.00047 * 352.91488 * 9 8 7 12 12 O 1.21406 * 119.99859 * 353.57203 * 11 9 8 13 13 N 1.34776 * 120.00095 * 173.57680 * 11 9 8 14 14 C 1.40290 * 120.00053 * 179.97438 * 13 11 9 15 15 C 1.40726 * 126.10038 * 359.68557 * 14 13 11 16 16 N 1.30880 * 108.37392 * 179.81809 * 15 14 13 17 17 N 1.40056 * 108.43450 * 0.44748 * 16 15 14 18 18 C 1.37296 * 126.05123 * 179.71683 * 17 16 15 19 19 H 1.08000 * 120.00297 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.00236 * 359.97438 * 18 17 16 21 21 N 1.31284 * 120.00169 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00473 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46649 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47462 * 119.99524 * 22 20 18 25 25 H 1.48494 * 109.47470 * 240.00441 * 22 20 18 26 26 C 1.35785 * 126.10059 * 180.02562 * 14 13 11 27 27 C 1.46924 * 118.73985 * 306.38989 * 8 7 6 28 28 H 1.09002 * 109.46894 * 299.99616 * 1 2 3 29 29 H 1.08993 * 109.47220 * 59.99872 * 1 2 3 30 30 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47559 * 240.00095 * 2 1 3 32 32 H 1.09004 * 109.47605 * 119.99902 * 2 1 3 33 33 H 1.08997 * 109.46075 * 61.30387 * 5 3 2 34 34 H 1.09000 * 109.46227 * 301.32638 * 5 3 2 35 35 H 1.08995 * 109.49903 * 58.59954 * 6 5 3 36 36 H 1.09008 * 109.49385 * 178.69207 * 6 5 3 37 37 H 1.08996 * 109.58588 * 174.42296 * 7 6 5 38 38 H 1.08998 * 109.58788 * 294.85146 * 7 6 5 39 39 H 0.96998 * 119.99995 * 359.97438 * 13 11 9 40 40 H 1.07999 * 125.81078 * 0.02562 * 15 14 13 41 41 H 0.96995 * 120.00394 * 180.02562 * 21 20 18 42 42 H 1.07998 * 126.25271 * 359.97438 * 26 14 13 43 43 H 1.08998 * 109.58455 * 173.39605 * 27 8 7 44 44 H 1.08998 * 109.58739 * 293.68286 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8408 5 6 3.5652 1.4450 0.1257 6 6 4.0733 2.8883 0.1587 7 6 3.6947 3.5888 -1.1500 8 7 2.2445 3.4640 -1.3507 9 6 1.4849 4.5559 -1.5680 10 8 0.3133 4.4319 -1.8597 11 6 2.0847 5.9181 -1.4502 12 8 3.2222 6.0476 -1.0460 13 7 1.3634 7.0040 -1.7925 14 6 1.9268 8.2840 -1.6813 15 6 3.2240 8.5821 -1.2242 16 7 3.3881 9.8798 -1.2662 17 7 2.2049 10.4608 -1.7396 18 6 1.9797 11.8031 -1.9200 19 1 1.0257 12.1453 -2.2928 20 6 2.9797 12.7218 -1.6228 21 7 4.1397 12.3059 -1.1700 22 14 2.6737 14.5480 -1.8689 23 1 1.2968 14.7538 -2.3858 24 1 2.8256 15.2547 -0.5717 25 1 3.6548 15.0873 -2.8444 26 6 1.3156 9.4567 -1.9893 27 6 1.6382 2.1263 -1.3103 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0008 0.9262 -0.7281 34 1 3.8546 0.9370 1.0457 35 1 3.6190 3.4149 0.9979 36 1 5.1575 2.8898 0.2716 37 1 3.9662 4.6428 -1.0922 38 1 4.2203 3.1190 -1.9813 39 1 0.4547 6.9005 -2.1157 40 1 3.9600 7.8622 -0.8979 41 1 4.8374 12.9469 -0.9623 42 1 0.3094 9.5733 -2.3640 43 1 0.5529 2.2154 -1.3582 44 1 1.9943 1.5381 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746365074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:59 Heat of formation + Delta-G solvation = 20.484972 kcal Electronic energy + Delta-G solvation = -26830.816709 eV Core-core repulsion = 22978.507551 eV Total energy + Delta-G solvation = -3852.309158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86708 -39.70904 -38.49106 -37.66517 -35.10532 -34.11414 -33.21509 -32.34592 -30.35989 -29.53322 -28.14912 -26.45860 -25.02574 -24.39540 -23.18642 -21.57037 -21.16032 -20.42667 -19.58239 -19.44238 -17.71642 -17.26501 -16.66084 -15.77783 -15.59280 -15.44451 -15.20658 -14.89981 -14.60332 -14.27079 -14.03018 -13.83518 -13.71644 -13.66408 -13.28883 -13.03711 -12.84408 -12.66704 -12.42147 -11.88079 -11.76081 -11.64267 -11.36181 -11.32312 -11.15713 -11.04724 -10.92698 -10.84939 -10.62501 -10.54256 -10.46907 -10.30936 -9.27205 -8.93024 -8.77949 -8.59898 -8.16179 -6.82208 -6.63216 -4.30583 1.61155 2.54403 2.90633 3.02575 3.08362 3.28623 3.66675 3.68413 3.85417 4.33076 4.39556 4.52242 4.54879 4.66524 4.89534 4.94078 4.95663 5.06260 5.12592 5.14767 5.21321 5.44347 5.47673 5.57799 5.68139 5.70999 5.73568 5.81990 5.87431 5.98635 6.03402 6.13390 6.18926 6.25435 6.32104 6.39689 6.72287 6.85947 7.05008 7.14893 7.19968 7.70310 7.81481 8.07846 8.15236 8.45857 8.66152 9.27996 9.56535 10.32579 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.002446 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.166974 B =11442.466536 C =12029.903026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.045 3.955 8 N -0.582 5.582 9 C 0.515 3.485 10 O -0.533 6.533 11 C 0.487 3.513 12 O -0.512 6.512 13 N -0.578 5.578 14 C -0.072 4.072 15 C -0.025 4.025 16 N -0.260 5.260 17 N -0.138 5.138 18 C -0.321 4.321 19 H 0.119 0.881 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.076 4.076 27 C 0.112 3.888 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.165 0.835 38 H 0.060 0.940 39 H 0.410 0.590 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 43 H 0.093 0.907 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -18.992 0.972 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.168 4.168 7 C -0.076 4.076 8 N -0.315 5.315 9 C 0.298 3.702 10 O -0.409 6.409 11 C 0.269 3.731 12 O -0.392 6.392 13 N -0.219 5.219 14 C -0.178 4.178 15 C -0.201 4.201 16 N -0.091 5.091 17 N 0.096 4.904 18 C -0.453 4.453 19 H 0.136 0.864 20 C -0.172 4.172 21 N -0.393 5.393 22 Si 0.760 3.240 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.228 4.228 27 C -0.010 4.010 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.180 0.820 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.195 0.805 41 H 0.086 0.914 42 H 0.167 0.833 43 H 0.111 0.889 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.965 -17.890 1.377 18.050 hybrid contribution -1.194 -0.198 -0.406 1.276 sum -3.159 -18.088 0.971 18.387 Atomic orbital electron populations 1.21843 0.95698 1.01594 1.02301 1.21518 0.96055 0.95564 1.02197 1.21569 0.96383 0.96143 0.98113 0.90650 1.21631 0.94643 0.97248 1.01921 1.21848 1.01259 0.95250 0.98449 1.23360 0.78130 1.09531 0.96546 1.47904 1.09255 1.05489 1.68856 1.20151 0.86150 0.85961 0.77896 1.90715 1.16449 1.86861 1.46916 1.19706 0.86395 0.85209 0.81798 1.90179 1.17744 1.83803 1.47455 1.42181 1.16537 1.03743 1.59433 1.17261 0.96708 0.82358 1.21464 1.24152 0.95677 0.94356 1.05876 1.78268 1.03547 1.05404 1.21883 1.44576 1.06908 1.04753 1.34193 1.19979 1.02080 0.77370 1.45897 0.86366 1.25673 0.94677 1.01482 0.95330 1.70211 1.02693 1.35517 1.30888 0.85736 0.79316 0.80301 0.78660 1.18607 1.19849 1.19845 1.21313 0.97717 0.87235 1.16537 1.21789 0.99943 0.82119 0.97168 0.92630 0.92318 0.92764 0.91817 0.91655 0.91899 0.91831 0.91462 0.90647 0.81968 0.92190 0.75484 0.80485 0.91374 0.83330 0.88867 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -0.83 5.40 -26.73 -0.14 -0.97 16 3 C -0.10 -0.93 2.34 -90.51 -0.21 -1.14 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -0.99 5.17 -26.69 -0.14 -1.13 16 6 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 7 C 0.04 0.55 6.27 -3.71 -0.02 0.53 16 8 N -0.58 -7.73 2.97 -173.35 -0.52 -8.24 16 9 C 0.52 8.20 7.74 -11.65 -0.09 8.11 16 10 O -0.53 -9.13 15.94 5.48 0.09 -9.04 16 11 C 0.49 8.72 7.74 -11.65 -0.09 8.63 16 12 O -0.51 -9.77 10.24 5.45 0.06 -9.72 16 13 N -0.58 -10.76 5.45 -10.45 -0.06 -10.82 16 14 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 15 C -0.02 -0.63 10.85 -17.02 -0.18 -0.81 16 16 N -0.26 -7.33 10.39 30.81 0.32 -7.01 16 17 N -0.14 -3.69 3.73 -11.40 -0.04 -3.74 16 18 C -0.32 -8.30 10.25 -14.82 -0.15 -8.45 16 19 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 20 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 21 N -0.77 -20.89 11.81 55.50 0.66 -20.24 16 22 Si 0.94 18.51 29.55 -169.99 -5.02 13.49 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 C -0.08 -1.77 11.50 -16.38 -0.19 -1.96 16 27 C 0.11 1.21 5.30 -3.73 -0.02 1.19 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.16 2.42 3.78 -56.78 -0.21 2.20 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.18 4.27 5.92 -52.49 -0.31 3.96 16 41 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 43 H 0.09 1.09 5.78 -51.93 -0.30 0.79 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.69 356.35 -7.00 -37.69 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.13 Total: 11.69 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.72 Total: 0.57 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.36 Total: -50.05 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.14 Total: -18.76 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.69 -7.00 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746365074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.178 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds