Wall clock time and date at job start Tue Mar 31 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47318 * 2 1 4 4 H 1.09006 * 109.51638 * 54.91942 * 3 2 1 5 5 C 1.53037 * 109.49825 * 174.99934 * 3 2 1 6 6 C 1.53046 * 109.52219 * 181.31019 * 5 3 2 7 7 C 1.53193 * 109.31549 * 298.64019 * 6 5 3 8 8 N 1.46931 * 108.77143 * 54.63694 * 7 6 5 9 9 C 1.34777 * 120.62935 * 126.40920 * 8 7 6 10 10 O 1.21368 * 119.99937 * 172.90435 * 9 8 7 11 11 C 1.49309 * 120.00047 * 352.91488 * 9 8 7 12 12 O 1.21406 * 119.99859 * 353.57203 * 11 9 8 13 13 N 1.34776 * 120.00095 * 173.57680 * 11 9 8 14 14 C 1.40290 * 120.00053 * 179.97438 * 13 11 9 15 15 C 1.40726 * 126.10038 * 359.68557 * 14 13 11 16 16 N 1.30880 * 108.37392 * 179.81809 * 15 14 13 17 17 N 1.40056 * 108.43450 * 0.44748 * 16 15 14 18 18 C 1.37296 * 126.05123 * 179.71683 * 17 16 15 19 19 H 1.08000 * 120.00297 * 179.97438 * 18 17 16 20 20 C 1.39004 * 120.00236 * 359.97438 * 18 17 16 21 21 N 1.31284 * 120.00169 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00473 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46649 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47462 * 119.99524 * 22 20 18 25 25 H 1.48494 * 109.47470 * 240.00441 * 22 20 18 26 26 C 1.35785 * 126.10059 * 180.02562 * 14 13 11 27 27 C 1.46924 * 118.73985 * 306.38989 * 8 7 6 28 28 H 1.09002 * 109.46894 * 299.99616 * 1 2 3 29 29 H 1.08993 * 109.47220 * 59.99872 * 1 2 3 30 30 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47559 * 240.00095 * 2 1 3 32 32 H 1.09004 * 109.47605 * 119.99902 * 2 1 3 33 33 H 1.08997 * 109.46075 * 61.30387 * 5 3 2 34 34 H 1.09000 * 109.46227 * 301.32638 * 5 3 2 35 35 H 1.08995 * 109.49903 * 58.59954 * 6 5 3 36 36 H 1.09008 * 109.49385 * 178.69207 * 6 5 3 37 37 H 1.08996 * 109.58588 * 174.42296 * 7 6 5 38 38 H 1.08998 * 109.58788 * 294.85146 * 7 6 5 39 39 H 0.96998 * 119.99995 * 359.97438 * 13 11 9 40 40 H 1.07999 * 125.81078 * 0.02562 * 15 14 13 41 41 H 0.96995 * 120.00394 * 180.02562 * 21 20 18 42 42 H 1.07998 * 126.25271 * 359.97438 * 26 14 13 43 43 H 1.08998 * 109.58455 * 173.39605 * 27 8 7 44 44 H 1.08998 * 109.58739 * 293.68286 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8408 5 6 3.5652 1.4450 0.1257 6 6 4.0733 2.8883 0.1587 7 6 3.6947 3.5888 -1.1500 8 7 2.2445 3.4640 -1.3507 9 6 1.4849 4.5559 -1.5680 10 8 0.3133 4.4319 -1.8597 11 6 2.0847 5.9181 -1.4502 12 8 3.2222 6.0476 -1.0460 13 7 1.3634 7.0040 -1.7925 14 6 1.9268 8.2840 -1.6813 15 6 3.2240 8.5821 -1.2242 16 7 3.3881 9.8798 -1.2662 17 7 2.2049 10.4608 -1.7396 18 6 1.9797 11.8031 -1.9200 19 1 1.0257 12.1453 -2.2928 20 6 2.9797 12.7218 -1.6228 21 7 4.1397 12.3059 -1.1700 22 14 2.6737 14.5480 -1.8689 23 1 1.2968 14.7538 -2.3858 24 1 2.8256 15.2547 -0.5717 25 1 3.6548 15.0873 -2.8444 26 6 1.3156 9.4567 -1.9893 27 6 1.6382 2.1263 -1.3103 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0008 0.9262 -0.7281 34 1 3.8546 0.9370 1.0457 35 1 3.6190 3.4149 0.9979 36 1 5.1575 2.8898 0.2716 37 1 3.9662 4.6428 -1.0922 38 1 4.2203 3.1190 -1.9813 39 1 0.4547 6.9005 -2.1157 40 1 3.9600 7.8622 -0.8979 41 1 4.8374 12.9469 -0.9623 42 1 0.3094 9.5733 -2.3640 43 1 0.5529 2.2154 -1.3582 44 1 1.9943 1.5381 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746365074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:59 Heat of formation + Delta-G solvation = 0.926838 kcal Electronic energy + Delta-G solvation = -26831.664814 eV Core-core repulsion = 22978.507551 eV Total energy + Delta-G solvation = -3853.157262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24823 -41.38494 -39.80281 -38.86638 -36.39839 -35.43475 -34.90260 -33.25115 -32.29762 -30.34698 -29.90042 -27.74627 -26.70953 -25.18875 -24.50863 -22.94882 -22.38862 -21.57296 -21.29409 -20.57586 -19.43601 -18.59925 -17.94897 -17.45962 -17.04346 -16.77297 -16.49333 -16.10823 -15.80423 -15.65145 -15.24665 -15.05293 -14.89568 -14.86225 -14.48191 -14.42946 -13.94907 -13.60031 -13.52136 -13.40825 -13.18565 -12.94523 -12.83180 -12.57410 -12.41344 -12.05722 -12.02876 -11.93898 -11.83145 -11.60234 -11.52020 -11.22165 -11.08854 -10.86905 -10.14283 -9.99664 -9.78713 -8.63438 -8.49211 -6.26663 0.22875 1.25576 1.28221 1.42057 1.59992 1.71133 2.01274 2.10613 2.45256 2.51503 2.84330 3.07423 3.36843 3.70999 3.82453 3.92370 4.11311 4.29664 4.35248 4.39392 4.41834 4.51600 4.53579 4.62832 4.70070 4.83873 4.89306 4.93899 4.97346 4.98767 5.03954 5.09339 5.15810 5.20349 5.25634 5.29410 5.33302 5.44484 5.52089 5.59488 5.91882 6.01580 6.20981 6.38386 6.67607 6.74802 7.06278 7.40763 7.62795 8.50136 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035072 B = 0.002446 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.166974 B =11442.466536 C =12029.903026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.098 4.098 4 H 0.059 0.941 5 C -0.111 4.111 6 C -0.127 4.127 7 C 0.042 3.958 8 N -0.573 5.573 9 C 0.518 3.482 10 O -0.547 6.547 11 C 0.488 3.512 12 O -0.523 6.523 13 N -0.579 5.579 14 C -0.058 4.058 15 C -0.044 4.044 16 N -0.307 5.307 17 N -0.163 5.163 18 C -0.352 4.352 19 H 0.141 0.859 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.242 1.242 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.075 4.075 27 C 0.108 3.892 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.422 0.578 40 H 0.179 0.821 41 H 0.278 0.722 42 H 0.187 0.813 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -20.648 0.484 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.165 4.165 7 C -0.078 4.078 8 N -0.305 5.305 9 C 0.300 3.700 10 O -0.426 6.426 11 C 0.271 3.729 12 O -0.403 6.403 13 N -0.223 5.223 14 C -0.164 4.164 15 C -0.220 4.220 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.483 4.483 19 H 0.158 0.842 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.226 4.226 27 C -0.013 4.013 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.260 0.740 40 H 0.196 0.804 41 H 0.088 0.912 42 H 0.204 0.796 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.919 -19.609 0.890 19.845 hybrid contribution -0.891 0.072 -0.240 0.926 sum -3.810 -19.537 0.651 19.916 Atomic orbital electron populations 1.21854 0.96019 1.02149 1.01559 1.21485 0.95706 0.94128 1.03354 1.21539 0.96885 0.97045 0.96280 0.92270 1.21615 0.93969 0.95926 1.03373 1.21825 1.02115 0.96188 0.96372 1.23310 0.77586 1.08386 0.98563 1.48046 1.09615 1.05791 1.67053 1.19704 0.86068 0.85576 0.78672 1.90712 1.16837 1.86825 1.48180 1.20261 0.86099 0.86021 0.80480 1.90235 1.18366 1.84496 1.47213 1.42130 1.17244 1.02526 1.60368 1.17286 0.95658 0.83971 1.19486 1.24289 0.97071 0.93877 1.06765 1.78162 1.05433 1.06725 1.23544 1.44841 1.07136 1.05712 1.35425 1.20678 1.03418 0.77523 1.46692 0.84168 1.26869 0.93965 1.06674 0.94206 1.70372 1.04077 1.37450 1.32875 0.84533 0.80013 0.73244 0.78422 1.16486 1.19732 1.19695 1.21997 0.98754 0.86645 1.15193 1.22041 0.99397 0.80767 0.99074 0.93407 0.93078 0.91574 0.90560 0.90535 0.90424 0.90338 0.93230 0.89231 0.84552 0.90257 0.73998 0.80397 0.91227 0.79637 0.89813 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.11 -1.24 5.40 30.59 0.17 -1.07 16 3 C -0.10 -1.55 2.34 -10.72 -0.03 -1.57 16 4 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 5 C -0.11 -1.56 5.17 30.62 0.16 -1.41 16 6 C -0.13 -2.39 6.08 30.67 0.19 -2.21 16 7 C 0.04 0.98 6.27 86.36 0.54 1.52 16 8 N -0.57 -14.51 2.97 -820.70 -2.44 -16.95 16 9 C 0.52 16.15 7.74 87.23 0.67 16.82 16 10 O -0.55 -18.31 15.94 -3.30 -0.05 -18.36 16 11 C 0.49 17.51 7.74 87.23 0.68 18.19 16 12 O -0.52 -20.35 10.24 -3.42 -0.04 -20.39 16 13 N -0.58 -21.43 5.45 -305.33 -1.66 -23.10 16 14 C -0.06 -2.63 6.90 37.83 0.26 -2.37 16 15 C -0.04 -2.32 10.85 85.44 0.93 -1.39 16 16 N -0.31 -17.99 10.39 -56.43 -0.59 -18.57 16 17 N -0.16 -8.92 3.73 -189.98 -0.71 -9.63 16 18 C -0.35 -18.35 10.25 84.02 0.86 -17.49 16 19 H 0.14 6.37 7.83 -2.91 -0.02 6.35 16 20 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 21 N -0.82 -46.30 11.81 21.66 0.26 -46.04 16 22 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 23 H -0.24 -8.12 7.11 99.48 0.71 -7.41 16 24 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 27 C 0.11 2.12 5.30 86.35 0.46 2.58 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.72 6.70 -2.39 -0.02 0.70 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.14 4.06 3.78 -79.14 -0.30 3.76 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 13.36 8.31 -92.71 -0.77 12.59 16 40 H 0.18 8.98 5.92 -2.91 -0.02 8.96 16 41 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 43 H 0.08 1.85 5.78 -2.39 -0.01 1.83 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.00 356.35 3.78 -65.22 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.03 Total: 39.84 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 7.01 Total: 8.00 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -5.14 Total: -114.29 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.09 Total: -38.75 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.00 3.78 -65.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746365074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.151 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds