Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.52993 * 109.47562 * 120.00494 * 2 1 3 5 5 H 1.09003 * 110.00009 * 179.58977 * 4 2 1 6 6 C 1.54319 * 109.77318 * 300.74235 * 4 2 1 7 7 C 1.55152 * 102.86390 * 141.88491 * 6 4 2 8 8 C 1.54908 * 101.58306 * 324.30235 * 7 6 4 9 9 N 1.47022 * 109.88358 * 58.48543 * 4 2 1 10 10 C 1.34785 * 125.64347 * 61.68379 * 9 4 2 11 11 O 1.21357 * 119.99798 * 355.09817 * 10 9 4 12 12 C 1.49313 * 119.99475 * 175.10050 * 10 9 4 13 13 O 1.21399 * 120.00037 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99311 * 179.97438 * 12 10 9 15 15 C 1.40293 * 119.99488 * 180.28049 * 14 12 10 16 16 C 1.40726 * 126.10420 * 359.74383 * 15 14 12 17 17 N 1.30869 * 108.37662 * 179.97438 * 16 15 14 18 18 N 1.40058 * 108.43812 * 359.97438 * 17 16 15 19 19 C 1.37302 * 126.05434 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99738 * 179.97438 * 19 18 17 21 21 C 1.38999 * 120.00015 * 359.97438 * 19 18 17 22 22 N 1.31283 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47386 * 59.99989 * 23 21 19 25 25 H 1.48508 * 109.47096 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47253 * 299.99422 * 23 21 19 27 27 C 1.35793 * 126.09712 * 179.44113 * 15 14 12 28 28 H 1.08999 * 109.46898 * 306.21384 * 1 2 3 29 29 H 1.08996 * 109.47473 * 66.21434 * 1 2 3 30 30 H 1.09000 * 109.47256 * 186.21791 * 1 2 3 31 31 H 1.09002 * 109.46601 * 240.00769 * 2 1 3 32 32 H 1.09011 * 109.46833 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47191 * 300.00149 * 3 2 1 34 34 H 1.08996 * 109.47301 * 60.00933 * 3 2 1 35 35 H 1.08998 * 110.92273 * 23.46452 * 6 4 2 36 36 H 1.08999 * 110.74003 * 260.21550 * 6 4 2 37 37 H 1.09003 * 110.99927 * 206.22719 * 7 6 4 38 38 H 1.08998 * 111.03862 * 82.39212 * 7 6 4 39 39 H 1.08999 * 110.36519 * 278.17031 * 8 7 6 40 40 H 1.08995 * 110.36420 * 155.84710 * 8 7 6 41 41 H 0.96996 * 120.00386 * 359.97438 * 14 12 10 42 42 H 1.08006 * 125.80698 * 359.94312 * 16 15 14 43 43 H 0.96994 * 120.00628 * 180.02562 * 22 21 19 44 44 H 1.07998 * 126.25041 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1300 -0.7327 1.2541 6 6 1.5142 -0.0103 2.5138 7 6 1.2074 -1.1916 3.4718 8 6 0.6959 -2.2690 2.4832 9 7 1.5254 -2.0982 1.2766 10 6 1.7755 -3.0488 0.3543 11 8 2.4062 -2.7734 -0.6453 12 6 1.2765 -4.4406 0.5625 13 8 0.6460 -4.7161 1.5627 14 7 1.5262 -5.3909 -0.3600 15 6 1.0523 -6.6972 -0.1671 16 6 0.3116 -7.1560 0.9380 17 7 0.0515 -8.4264 0.7617 18 7 0.6121 -8.8283 -0.4572 19 6 0.5544 -10.0898 -0.9963 20 1 1.0231 -10.2922 -1.9480 21 6 -0.1071 -11.1062 -0.3172 22 7 -0.6764 -10.8603 0.8400 23 14 -0.1862 -12.8222 -1.0510 24 1 1.1910 -13.3479 -1.2304 25 1 -0.9418 -13.7168 -0.1376 26 1 -0.8702 -12.7665 -2.3678 27 6 1.2216 -7.7432 -1.0164 28 1 -0.3633 0.6071 0.8291 29 1 -0.3634 0.4144 -0.9403 30 1 -0.3634 -1.0216 0.1113 31 1 1.8932 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6079 0.5540 2.2947 36 1 2.2793 0.6406 2.9369 37 1 0.4333 -0.9212 4.1899 38 1 2.1107 -1.5266 3.9817 39 1 -0.3549 -2.0998 2.2482 40 1 0.8362 -3.2654 2.9022 41 1 2.0297 -5.1707 -1.1592 42 1 0.0098 -6.5610 1.7873 43 1 -1.1377 -11.5697 1.3141 44 1 1.7448 -7.7207 -1.9609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746382655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = 19.007113 kcal Electronic energy + Delta-G solvation = -27099.021778 eV Core-core repulsion = 23246.648535 eV Total energy + Delta-G solvation = -3852.373243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86590 -39.78394 -38.59544 -37.47846 -34.89584 -34.22680 -33.19106 -31.65996 -30.32143 -28.35229 -28.03108 -27.30404 -25.70998 -24.59506 -22.70172 -22.12963 -21.08315 -20.22509 -19.47561 -18.85445 -17.65600 -17.21016 -16.86578 -16.07570 -15.51805 -15.45001 -15.15443 -15.07670 -14.39287 -14.06735 -13.75476 -13.69395 -13.58667 -13.38569 -13.15148 -12.96824 -12.86183 -12.38425 -12.20361 -11.99862 -11.73250 -11.65777 -11.49706 -11.35231 -11.27237 -11.16018 -11.01429 -10.84897 -10.77981 -10.58100 -10.38506 -10.27365 -9.22493 -9.00746 -8.87180 -8.68598 -8.12916 -6.77470 -6.60348 -4.27714 1.69435 2.51313 2.94464 3.03479 3.07171 3.33821 3.69909 3.72313 3.87036 4.34316 4.37199 4.40881 4.58198 4.62692 4.84830 4.91032 4.93608 4.98168 5.02241 5.18354 5.28719 5.39073 5.44305 5.54941 5.65061 5.72506 5.73423 5.85145 5.91634 5.94386 5.98142 6.07726 6.17948 6.20929 6.34640 6.36352 6.77354 6.88562 6.97441 7.16594 7.29815 7.72670 7.83966 8.13110 8.18683 8.50419 8.70244 9.31197 9.59951 10.35425 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033807 B = 0.002553 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.034882 B =10966.122704 C =11461.899594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.142 3.858 5 H 0.077 0.923 6 C -0.132 4.132 7 C -0.137 4.137 8 C 0.092 3.908 9 N -0.587 5.587 10 C 0.528 3.472 11 O -0.529 6.529 12 C 0.487 3.513 13 O -0.519 6.519 14 N -0.584 5.584 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.047 3.953 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 19.721 1.658 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.039 3.961 5 H 0.095 0.905 6 C -0.169 4.169 7 C -0.175 4.175 8 C -0.030 4.030 9 N -0.321 5.321 10 C 0.312 3.688 11 O -0.405 6.405 12 C 0.268 3.732 13 O -0.397 6.397 14 N -0.226 5.226 15 C -0.174 4.174 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.795 18.436 2.451 18.807 hybrid contribution 0.664 0.138 -1.171 1.353 sum 3.458 18.574 1.280 18.936 Atomic orbital electron populations 1.21843 0.94979 1.02033 1.01352 1.21480 0.96413 0.96225 0.98932 1.21797 1.00989 0.95416 1.01847 1.21718 0.98378 0.80554 0.95482 0.90500 1.22809 1.02237 0.97661 0.94225 1.22850 1.02127 0.95115 0.97375 1.22755 0.94387 1.01906 0.83925 1.48246 1.49383 1.10596 1.23909 1.19953 0.80602 0.85678 0.82555 1.90707 1.40485 1.81961 1.27379 1.19602 0.83402 0.85481 0.84747 1.90578 1.40146 1.81027 1.27922 1.42146 1.51327 1.07297 1.21873 1.17252 1.15223 0.83767 1.01167 1.24137 1.02901 0.93612 0.99584 1.78254 1.21136 1.10472 0.99276 1.44552 1.28496 1.06011 1.11448 1.19873 1.37171 0.82365 1.06024 0.86502 1.25658 0.95203 1.00832 0.95414 1.70193 1.24700 1.33576 1.10969 0.85874 0.79179 0.79864 0.79133 1.19098 1.20096 1.19094 1.21306 1.11982 0.88002 1.01636 0.92561 0.92839 0.92574 0.89475 0.92654 0.92505 0.92514 0.89818 0.90164 0.89757 0.90600 0.91121 0.87170 0.75646 0.80562 0.91307 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.73 37.16 0.32 -1.09 16 2 C -0.11 -1.12 2.64 -90.63 -0.24 -1.36 16 3 C -0.14 -1.08 8.97 37.16 0.33 -0.75 16 4 C 0.14 1.46 2.71 -66.96 -0.18 1.28 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.13 -0.98 5.18 -24.90 -0.13 -1.11 16 7 C -0.14 -1.11 7.08 -24.59 -0.17 -1.29 16 8 C 0.09 1.06 6.18 -2.53 -0.02 1.05 16 9 N -0.59 -7.63 2.16 -163.58 -0.35 -7.98 16 10 C 0.53 8.45 7.73 -11.65 -0.09 8.36 16 11 O -0.53 -9.05 15.36 5.49 0.08 -8.96 16 12 C 0.49 8.96 7.82 -11.65 -0.09 8.87 16 13 O -0.52 -10.32 10.85 5.45 0.06 -10.26 16 14 N -0.58 -11.20 5.45 -10.45 -0.06 -11.25 16 15 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 16 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 17 N -0.26 -7.46 10.39 30.81 0.32 -7.14 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 20 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.17 11.81 55.50 0.66 -20.51 16 23 Si 0.94 18.71 29.55 -169.99 -5.02 13.68 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.46 6.28 -51.93 -0.33 0.13 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 31 H 0.09 1.11 6.74 -51.93 -0.35 0.76 16 32 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 7.10 -51.93 -0.37 -0.01 16 35 H 0.08 0.57 5.58 -51.93 -0.29 0.28 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.11 1.51 5.89 -51.93 -0.31 1.21 16 41 H 0.41 6.84 8.29 -40.82 -0.34 6.50 16 42 H 0.18 4.39 5.92 -52.48 -0.31 4.08 16 43 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -31.70 355.05 -6.49 -38.18 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.02 Total: 11.30 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.46 Total: 1.40 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.52 Total: -50.70 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.14 Total: -19.22 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.70 -6.49 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.191 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds