Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.52993 * 109.47562 * 120.00494 * 2 1 3 5 5 H 1.09003 * 110.00009 * 179.58977 * 4 2 1 6 6 C 1.54319 * 109.77318 * 300.74235 * 4 2 1 7 7 C 1.55152 * 102.86390 * 141.88491 * 6 4 2 8 8 C 1.54908 * 101.58306 * 324.30235 * 7 6 4 9 9 N 1.47022 * 109.88358 * 58.48543 * 4 2 1 10 10 C 1.34785 * 125.64347 * 61.68379 * 9 4 2 11 11 O 1.21357 * 119.99798 * 355.09817 * 10 9 4 12 12 C 1.49313 * 119.99475 * 175.10050 * 10 9 4 13 13 O 1.21399 * 120.00037 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99311 * 179.97438 * 12 10 9 15 15 C 1.40293 * 119.99488 * 180.28049 * 14 12 10 16 16 C 1.40726 * 126.10420 * 359.74383 * 15 14 12 17 17 N 1.30869 * 108.37662 * 179.97438 * 16 15 14 18 18 N 1.40058 * 108.43812 * 359.97438 * 17 16 15 19 19 C 1.37302 * 126.05434 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99738 * 179.97438 * 19 18 17 21 21 C 1.38999 * 120.00015 * 359.97438 * 19 18 17 22 22 N 1.31283 * 120.00309 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99957 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47386 * 59.99989 * 23 21 19 25 25 H 1.48508 * 109.47096 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47253 * 299.99422 * 23 21 19 27 27 C 1.35793 * 126.09712 * 179.44113 * 15 14 12 28 28 H 1.08999 * 109.46898 * 306.21384 * 1 2 3 29 29 H 1.08996 * 109.47473 * 66.21434 * 1 2 3 30 30 H 1.09000 * 109.47256 * 186.21791 * 1 2 3 31 31 H 1.09002 * 109.46601 * 240.00769 * 2 1 3 32 32 H 1.09011 * 109.46833 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47191 * 300.00149 * 3 2 1 34 34 H 1.08996 * 109.47301 * 60.00933 * 3 2 1 35 35 H 1.08998 * 110.92273 * 23.46452 * 6 4 2 36 36 H 1.08999 * 110.74003 * 260.21550 * 6 4 2 37 37 H 1.09003 * 110.99927 * 206.22719 * 7 6 4 38 38 H 1.08998 * 111.03862 * 82.39212 * 7 6 4 39 39 H 1.08999 * 110.36519 * 278.17031 * 8 7 6 40 40 H 1.08995 * 110.36420 * 155.84710 * 8 7 6 41 41 H 0.96996 * 120.00386 * 359.97438 * 14 12 10 42 42 H 1.08006 * 125.80698 * 359.94312 * 16 15 14 43 43 H 0.96994 * 120.00628 * 180.02562 * 22 21 19 44 44 H 1.07998 * 126.25041 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1300 -0.7327 1.2541 6 6 1.5142 -0.0103 2.5138 7 6 1.2074 -1.1916 3.4718 8 6 0.6959 -2.2690 2.4832 9 7 1.5254 -2.0982 1.2766 10 6 1.7755 -3.0488 0.3543 11 8 2.4062 -2.7734 -0.6453 12 6 1.2765 -4.4406 0.5625 13 8 0.6460 -4.7161 1.5627 14 7 1.5262 -5.3909 -0.3600 15 6 1.0523 -6.6972 -0.1671 16 6 0.3116 -7.1560 0.9380 17 7 0.0515 -8.4264 0.7617 18 7 0.6121 -8.8283 -0.4572 19 6 0.5544 -10.0898 -0.9963 20 1 1.0231 -10.2922 -1.9480 21 6 -0.1071 -11.1062 -0.3172 22 7 -0.6764 -10.8603 0.8400 23 14 -0.1862 -12.8222 -1.0510 24 1 1.1910 -13.3479 -1.2304 25 1 -0.9418 -13.7168 -0.1376 26 1 -0.8702 -12.7665 -2.3678 27 6 1.2216 -7.7432 -1.0164 28 1 -0.3633 0.6071 0.8291 29 1 -0.3634 0.4144 -0.9403 30 1 -0.3634 -1.0216 0.1113 31 1 1.8932 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6079 0.5540 2.2947 36 1 2.2793 0.6406 2.9369 37 1 0.4333 -0.9212 4.1899 38 1 2.1107 -1.5266 3.9817 39 1 -0.3549 -2.0998 2.2482 40 1 0.8362 -3.2654 2.9022 41 1 2.0297 -5.1707 -1.1592 42 1 0.0098 -6.5610 1.7873 43 1 -1.1377 -11.5697 1.3141 44 1 1.7448 -7.7207 -1.9609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746382655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -1.183857 kcal Electronic energy + Delta-G solvation = -27099.897324 eV Core-core repulsion = 23246.648535 eV Total energy + Delta-G solvation = -3853.248789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18704 -41.45466 -40.00408 -38.76623 -36.22360 -35.47807 -34.98434 -32.60866 -32.30315 -29.91924 -29.14141 -28.00166 -27.31941 -26.11091 -23.87519 -22.92796 -22.92027 -21.57597 -21.22490 -19.93448 -19.39232 -18.55340 -17.96904 -17.45508 -17.26458 -16.79117 -16.59119 -16.15899 -15.79041 -15.53973 -15.26455 -14.94390 -14.86924 -14.52622 -14.42946 -14.17863 -13.87587 -13.51531 -13.38640 -13.05696 -12.97288 -12.91891 -12.89392 -12.75560 -12.51484 -12.22073 -12.13555 -11.98354 -11.92935 -11.87874 -11.49395 -11.17869 -11.06332 -10.88534 -10.40075 -10.15199 -9.78598 -8.63466 -8.49642 -6.27569 0.27916 1.23177 1.29634 1.40924 1.56499 1.71825 2.02554 2.10818 2.46781 2.51864 2.84272 3.06647 3.39864 3.62925 3.68263 3.85070 4.09482 4.17113 4.21693 4.37873 4.45726 4.50573 4.53034 4.65145 4.80035 4.89849 4.91074 4.94660 4.96124 4.97136 5.02228 5.06887 5.13408 5.17095 5.24840 5.25761 5.30807 5.34720 5.45150 5.54802 5.90049 6.09929 6.20953 6.38299 6.65385 6.76088 7.06410 7.39755 7.61502 8.49406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033807 B = 0.002553 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.034882 B =10966.122704 C =11461.899594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.137 4.137 4 C 0.133 3.867 5 H 0.075 0.925 6 C -0.120 4.120 7 C -0.126 4.126 8 C 0.084 3.916 9 N -0.579 5.579 10 C 0.530 3.470 11 O -0.543 6.543 12 C 0.487 3.513 13 O -0.533 6.533 14 N -0.584 5.584 15 C -0.056 4.056 16 C -0.047 4.047 17 N -0.307 5.307 18 N -0.162 5.162 19 C -0.354 4.354 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.254 1.254 27 C -0.077 4.077 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.421 0.579 42 H 0.177 0.823 43 H 0.278 0.722 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 21.669 1.306 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.194 4.194 4 C 0.031 3.969 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.164 4.164 8 C -0.037 4.037 9 N -0.311 5.311 10 C 0.313 3.687 11 O -0.422 6.422 12 C 0.269 3.731 13 O -0.411 6.411 14 N -0.229 5.229 15 C -0.162 4.162 16 C -0.222 4.222 17 N -0.139 5.139 18 N 0.070 4.930 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.178 1.178 27 C -0.228 4.228 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.259 0.741 42 H 0.193 0.807 43 H 0.088 0.912 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.524 20.450 2.106 20.858 hybrid contribution 0.463 -0.269 -1.018 1.150 sum 3.987 20.181 1.089 20.600 Atomic orbital electron populations 1.21825 0.94759 1.00844 1.02475 1.21431 0.96529 0.97593 0.97330 1.21757 1.01142 0.93467 1.03054 1.22043 0.98402 0.79037 0.97422 0.90705 1.22844 1.03518 0.97312 0.92066 1.22838 1.02800 0.93873 0.96911 1.22863 0.94565 1.02109 0.84202 1.48380 1.48350 1.11192 1.23226 1.19393 0.81043 0.85036 0.83268 1.90703 1.41501 1.81911 1.28073 1.20230 0.82391 0.86521 0.84004 1.90580 1.40419 1.81683 1.28463 1.42097 1.51904 1.06045 1.22871 1.17296 1.13680 0.85331 0.99879 1.24240 1.04004 0.93362 1.00623 1.78149 1.22898 1.11802 1.01003 1.44832 1.29528 1.07183 1.11497 1.20618 1.38095 0.82559 1.07242 0.84166 1.26883 0.93964 1.05383 0.95449 1.70365 1.26255 1.35210 1.12979 0.84643 0.79679 0.73498 0.78349 1.17771 1.20122 1.17769 1.21982 1.10993 0.87135 1.02670 0.90268 0.92644 0.95140 0.92720 0.92413 0.92206 0.90408 0.88494 0.87499 0.87394 0.90420 0.90910 0.89733 0.74147 0.80669 0.91191 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.73 71.98 0.63 -1.92 16 2 C -0.11 -2.03 2.64 -10.80 -0.03 -2.06 16 3 C -0.14 -1.68 8.97 71.98 0.65 -1.04 16 4 C 0.13 2.48 2.71 45.34 0.12 2.61 16 5 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.12 -1.34 5.18 31.78 0.16 -1.17 16 7 C -0.13 -1.70 7.08 31.98 0.23 -1.48 16 8 C 0.08 1.88 6.18 86.86 0.54 2.42 16 9 N -0.58 -14.70 2.16 -789.81 -1.71 -16.40 16 10 C 0.53 17.05 7.73 87.23 0.67 17.72 16 11 O -0.54 -18.66 15.36 -3.27 -0.05 -18.71 16 12 C 0.49 18.27 7.82 87.23 0.68 18.95 16 13 O -0.53 -21.90 10.85 -3.40 -0.04 -21.94 16 14 N -0.58 -22.60 5.45 -305.32 -1.66 -24.27 16 15 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 16 C -0.05 -2.52 10.85 85.44 0.93 -1.60 16 17 N -0.31 -18.32 10.39 -56.43 -0.59 -18.90 16 18 N -0.16 -9.04 3.73 -189.98 -0.71 -9.75 16 19 C -0.35 -18.72 10.25 84.02 0.86 -17.86 16 20 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 21 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 22 N -0.82 -46.83 11.81 21.66 0.26 -46.57 16 23 Si 1.02 38.28 29.55 68.60 2.03 40.30 16 24 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 27 C -0.08 -3.65 11.50 83.41 0.96 -2.69 16 28 H 0.08 1.04 6.28 -2.39 -0.02 1.02 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.69 7.32 -2.39 -0.02 0.67 16 31 H 0.05 1.38 6.74 -2.39 -0.02 1.37 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.65 7.10 -2.39 -0.02 0.63 16 35 H 0.10 0.88 5.58 -2.39 -0.01 0.86 16 36 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 40 H 0.08 2.36 5.89 -2.39 -0.01 2.35 16 41 H 0.42 14.00 8.29 -92.71 -0.77 13.23 16 42 H 0.18 9.20 5.92 -2.91 -0.02 9.18 16 43 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.19 7.10 8.06 -2.91 -0.02 7.07 16 Total: -1.00 -72.67 355.05 4.93 -67.74 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.27 Total: 38.73 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 7.13 Total: 9.76 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.41 Total: -115.89 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.09 Total: -40.65 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal Total: -72.67 4.93 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.557 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds