Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 C 1.52999 * 109.47297 * 119.99981 * 2 1 3 5 5 H 1.08999 * 109.87600 * 61.50911 * 4 2 1 6 6 C 1.54330 * 109.88190 * 300.33413 * 4 2 1 7 7 C 1.55159 * 102.94043 * 218.38708 * 6 4 2 8 8 C 1.54696 * 101.67626 * 35.33678 * 7 6 4 9 9 N 1.47025 * 109.88675 * 182.52545 * 4 2 1 10 10 C 1.34778 * 125.64620 * 298.32397 * 9 4 2 11 11 O 1.21365 * 120.00123 * 354.76321 * 10 9 4 12 12 C 1.49301 * 119.99880 * 174.76280 * 10 9 4 13 13 O 1.21405 * 120.00424 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00245 * 179.97438 * 12 10 9 15 15 C 1.40291 * 120.00320 * 179.72323 * 14 12 10 16 16 C 1.40719 * 126.10290 * 359.96885 * 15 14 12 17 17 N 1.30874 * 108.38232 * 179.84788 * 16 15 14 18 18 N 1.40063 * 108.43160 * 0.41206 * 17 16 15 19 19 C 1.37297 * 126.05453 * 179.70311 * 18 17 16 20 20 H 1.08006 * 120.00049 * 180.02562 * 19 18 17 21 21 C 1.38998 * 119.99984 * 0.03512 * 19 18 17 22 22 N 1.31286 * 120.00535 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00029 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46808 * 60.00331 * 23 21 19 25 25 H 1.48501 * 109.46899 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47054 * 300.00212 * 23 21 19 27 27 C 1.35795 * 126.09979 * 180.27920 * 15 14 12 28 28 H 1.09002 * 109.46746 * 305.07761 * 1 2 3 29 29 H 1.08999 * 109.47010 * 65.07203 * 1 2 3 30 30 H 1.08996 * 109.46989 * 185.08006 * 1 2 3 31 31 H 1.09000 * 109.47160 * 239.99554 * 2 1 3 32 32 H 1.09004 * 109.46947 * 300.00002 * 3 2 1 33 33 H 1.08994 * 109.47151 * 60.00346 * 3 2 1 34 34 H 1.09004 * 109.47098 * 179.97438 * 3 2 1 35 35 H 1.08993 * 110.71767 * 336.74795 * 6 4 2 36 36 H 1.09003 * 110.71851 * 99.84803 * 6 4 2 37 37 H 1.09003 * 111.00447 * 153.57516 * 7 6 4 38 38 H 1.08994 * 111.00757 * 277.38798 * 7 6 4 39 39 H 1.09001 * 110.38636 * 204.36378 * 8 7 6 40 40 H 1.09004 * 110.23228 * 82.11280 * 8 7 6 41 41 H 0.97008 * 120.00110 * 0.02562 * 14 12 10 42 42 H 1.08003 * 125.80856 * 0.02562 * 16 15 14 43 43 H 0.96995 * 120.00440 * 179.97438 * 22 21 19 44 44 H 1.07996 * 126.25113 * 359.95925 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7025 -1.7576 1.2425 6 6 1.5239 -0.0060 2.5157 7 6 2.7353 -0.0920 3.4813 8 6 3.9257 0.0504 2.5037 9 7 3.5089 -0.6740 1.2893 10 6 4.3373 -1.2093 0.3707 11 8 3.8862 -1.8722 -0.5403 12 6 5.8101 -0.9868 0.4740 13 8 6.2615 -0.3241 1.3855 14 7 6.6386 -1.5225 -0.4442 15 6 8.0219 -1.3086 -0.3505 16 6 8.6797 -0.5598 0.6428 17 7 9.9653 -0.5905 0.3993 18 7 10.1786 -1.3485 -0.7590 19 6 11.3940 -1.6084 -1.3422 20 1 11.4455 -2.2075 -2.2394 21 6 12.5584 -1.1005 -0.7780 22 7 12.4961 -0.3728 0.3130 23 14 14.2121 -1.4535 -1.5719 24 1 14.2209 -0.9170 -2.9565 25 1 15.2890 -0.8041 -0.7820 26 1 14.4410 -2.9203 -1.6078 27 6 8.9645 -1.7824 -1.2055 28 1 -0.3633 0.5906 0.8410 29 1 -0.3633 0.4331 -0.9319 30 1 -0.3633 -1.0236 0.0910 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.2772 1.0331 2.2982 36 1 0.6605 -0.5278 2.9284 37 1 2.7194 0.7257 4.2019 38 1 2.7631 -1.0564 3.9885 39 1 4.8215 -0.4035 2.9275 40 1 4.1032 1.1016 2.2764 41 1 6.2780 -2.0524 -1.1724 42 1 8.2048 -0.0492 1.4676 43 1 13.3086 -0.0187 0.7069 44 1 8.7858 -2.3916 -2.0792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746382656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = 17.698980 kcal Electronic energy + Delta-G solvation = -27121.593573 eV Core-core repulsion = 23269.163605 eV Total energy + Delta-G solvation = -3852.429968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85928 -39.78143 -38.59591 -37.47566 -34.89705 -34.23162 -33.18679 -31.67579 -30.31836 -28.37513 -28.02086 -27.30712 -25.70456 -24.59276 -22.72967 -22.14040 -21.07246 -20.21653 -19.46509 -18.81515 -17.64166 -17.23812 -16.85932 -16.16788 -15.51623 -15.47964 -15.14879 -14.99204 -14.42297 -14.03175 -13.79280 -13.63247 -13.62953 -13.36251 -13.11847 -12.96517 -12.88730 -12.38490 -12.21423 -12.01021 -11.72912 -11.64303 -11.50347 -11.36288 -11.26983 -11.16889 -11.05086 -10.85586 -10.76258 -10.58037 -10.44299 -10.26216 -9.22199 -9.00029 -8.86087 -8.73995 -8.12592 -6.76972 -6.60118 -4.27456 1.69715 2.51454 2.94598 3.03568 3.07295 3.34036 3.69863 3.72393 3.86848 4.33418 4.37456 4.39123 4.57809 4.63058 4.82642 4.90072 4.93159 4.98383 5.02868 5.17422 5.28757 5.37803 5.42920 5.54691 5.63949 5.71828 5.73928 5.84144 5.86604 5.93412 5.98489 6.05833 6.18314 6.21073 6.31949 6.36664 6.77838 6.88837 6.96245 7.16767 7.29370 7.72743 7.84112 8.13380 8.18998 8.50739 8.70587 9.31503 9.60230 10.35639 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032703 B = 0.002570 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.993581 B =10893.484480 C =11323.580565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.141 3.859 5 H 0.078 0.922 6 C -0.131 4.131 7 C -0.137 4.137 8 C 0.102 3.898 9 N -0.588 5.588 10 C 0.529 3.471 11 O -0.529 6.529 12 C 0.486 3.514 13 O -0.519 6.519 14 N -0.585 5.585 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.047 3.953 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.918 1.043 2.696 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.038 3.962 5 H 0.096 0.904 6 C -0.169 4.169 7 C -0.175 4.175 8 C -0.020 4.020 9 N -0.322 5.322 10 C 0.312 3.688 11 O -0.406 6.406 12 C 0.267 3.733 13 O -0.396 6.396 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.243 0.757 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.457 1.635 3.353 18.830 hybrid contribution -0.303 -0.743 -1.095 1.357 sum -18.759 0.891 2.258 18.916 Atomic orbital electron populations 1.21784 0.94493 1.01803 1.01898 1.21457 0.95928 0.96868 0.98706 1.21856 1.01519 0.95461 1.01479 1.21715 0.79196 0.99796 0.95444 0.90425 1.22809 0.98170 1.01773 0.94117 1.22830 0.94249 1.03042 0.97428 1.22537 0.98301 0.97585 0.83587 1.48241 1.06142 1.54380 1.23443 1.19965 0.87399 0.79668 0.81723 1.90716 1.77877 1.38538 1.33448 1.19592 0.86521 0.83080 0.84137 1.90619 1.76552 1.39360 1.33074 1.42144 1.04799 1.48817 1.26960 1.17249 0.81025 1.14956 1.04137 1.24135 0.91328 1.03726 1.01064 1.78257 1.13865 1.16042 1.00976 1.44550 1.03808 1.27407 1.14751 1.19873 0.80409 1.34488 1.10666 0.86505 1.25659 1.00530 0.95241 0.95672 1.70195 1.29753 1.24162 1.15333 0.85876 0.79587 0.79300 0.79297 1.19096 1.20096 1.19099 1.21306 0.85650 1.12045 1.03940 0.92472 0.92486 0.92603 0.89882 0.92767 0.92404 0.92587 0.89792 0.90107 0.89662 0.90663 0.88285 0.90850 0.75664 0.80570 0.91312 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.11 -1.11 2.65 -90.62 -0.24 -1.35 16 3 C -0.15 -1.45 8.77 37.16 0.33 -1.12 16 4 C 0.14 1.45 2.66 -66.95 -0.18 1.27 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.13 -0.97 5.28 -24.89 -0.13 -1.10 16 7 C -0.14 -1.10 7.07 -24.70 -0.17 -1.27 16 8 C 0.10 1.17 5.86 -2.65 -0.02 1.16 16 9 N -0.59 -7.64 2.22 -163.71 -0.36 -8.00 16 10 C 0.53 8.49 7.66 -11.65 -0.09 8.40 16 11 O -0.53 -9.13 15.74 5.48 0.09 -9.04 16 12 C 0.49 8.98 7.82 -11.66 -0.09 8.89 16 13 O -0.52 -10.35 11.07 5.45 0.06 -10.29 16 14 N -0.58 -11.25 5.45 -10.46 -0.06 -11.31 16 15 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.48 10.39 30.81 0.32 -7.15 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.82 16 19 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 20 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.19 11.81 55.50 0.66 -20.54 16 23 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.08 -1.85 11.50 -16.38 -0.19 -2.04 16 28 H 0.06 0.36 7.20 -51.93 -0.37 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.05 7.09 -51.93 -0.37 0.68 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 6.10 -51.93 -0.32 0.16 16 34 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 35 H 0.08 0.57 5.47 -51.93 -0.28 0.28 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.33 6.51 -51.93 -0.34 0.99 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.41 6.87 8.29 -40.82 -0.34 6.53 16 42 H 0.18 4.40 5.92 -52.48 -0.31 4.09 16 43 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -31.87 356.35 -6.53 -38.41 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.07 Total: 11.10 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.47 Total: 1.57 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.51 Total: -50.82 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -6.53 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.105 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds