Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 C 1.52999 * 109.47297 * 119.99981 * 2 1 3 5 5 H 1.08999 * 109.87600 * 61.50911 * 4 2 1 6 6 C 1.54330 * 109.88190 * 300.33413 * 4 2 1 7 7 C 1.55159 * 102.94043 * 218.38708 * 6 4 2 8 8 C 1.54696 * 101.67626 * 35.33678 * 7 6 4 9 9 N 1.47025 * 109.88675 * 182.52545 * 4 2 1 10 10 C 1.34778 * 125.64620 * 298.32397 * 9 4 2 11 11 O 1.21365 * 120.00123 * 354.76321 * 10 9 4 12 12 C 1.49301 * 119.99880 * 174.76280 * 10 9 4 13 13 O 1.21405 * 120.00424 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00245 * 179.97438 * 12 10 9 15 15 C 1.40291 * 120.00320 * 179.72323 * 14 12 10 16 16 C 1.40719 * 126.10290 * 359.96885 * 15 14 12 17 17 N 1.30874 * 108.38232 * 179.84788 * 16 15 14 18 18 N 1.40063 * 108.43160 * 0.41206 * 17 16 15 19 19 C 1.37297 * 126.05453 * 179.70311 * 18 17 16 20 20 H 1.08006 * 120.00049 * 180.02562 * 19 18 17 21 21 C 1.38998 * 119.99984 * 0.03512 * 19 18 17 22 22 N 1.31286 * 120.00535 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00029 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46808 * 60.00331 * 23 21 19 25 25 H 1.48501 * 109.46899 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47054 * 300.00212 * 23 21 19 27 27 C 1.35795 * 126.09979 * 180.27920 * 15 14 12 28 28 H 1.09002 * 109.46746 * 305.07761 * 1 2 3 29 29 H 1.08999 * 109.47010 * 65.07203 * 1 2 3 30 30 H 1.08996 * 109.46989 * 185.08006 * 1 2 3 31 31 H 1.09000 * 109.47160 * 239.99554 * 2 1 3 32 32 H 1.09004 * 109.46947 * 300.00002 * 3 2 1 33 33 H 1.08994 * 109.47151 * 60.00346 * 3 2 1 34 34 H 1.09004 * 109.47098 * 179.97438 * 3 2 1 35 35 H 1.08993 * 110.71767 * 336.74795 * 6 4 2 36 36 H 1.09003 * 110.71851 * 99.84803 * 6 4 2 37 37 H 1.09003 * 111.00447 * 153.57516 * 7 6 4 38 38 H 1.08994 * 111.00757 * 277.38798 * 7 6 4 39 39 H 1.09001 * 110.38636 * 204.36378 * 8 7 6 40 40 H 1.09004 * 110.23228 * 82.11280 * 8 7 6 41 41 H 0.97008 * 120.00110 * 0.02562 * 14 12 10 42 42 H 1.08003 * 125.80856 * 0.02562 * 16 15 14 43 43 H 0.96995 * 120.00440 * 179.97438 * 22 21 19 44 44 H 1.07996 * 126.25113 * 359.95925 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7025 -1.7576 1.2425 6 6 1.5239 -0.0060 2.5157 7 6 2.7353 -0.0920 3.4813 8 6 3.9257 0.0504 2.5037 9 7 3.5089 -0.6740 1.2893 10 6 4.3373 -1.2093 0.3707 11 8 3.8862 -1.8722 -0.5403 12 6 5.8101 -0.9868 0.4740 13 8 6.2615 -0.3241 1.3855 14 7 6.6386 -1.5225 -0.4442 15 6 8.0219 -1.3086 -0.3505 16 6 8.6797 -0.5598 0.6428 17 7 9.9653 -0.5905 0.3993 18 7 10.1786 -1.3485 -0.7590 19 6 11.3940 -1.6084 -1.3422 20 1 11.4455 -2.2075 -2.2394 21 6 12.5584 -1.1005 -0.7780 22 7 12.4961 -0.3728 0.3130 23 14 14.2121 -1.4535 -1.5719 24 1 14.2209 -0.9170 -2.9565 25 1 15.2890 -0.8041 -0.7820 26 1 14.4410 -2.9203 -1.6078 27 6 8.9645 -1.7824 -1.2055 28 1 -0.3633 0.5906 0.8410 29 1 -0.3633 0.4331 -0.9319 30 1 -0.3633 -1.0236 0.0910 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.2772 1.0331 2.2982 36 1 0.6605 -0.5278 2.9284 37 1 2.7194 0.7257 4.2019 38 1 2.7631 -1.0564 3.9885 39 1 4.8215 -0.4035 2.9275 40 1 4.1032 1.1016 2.2764 41 1 6.2780 -2.0524 -1.1724 42 1 8.2048 -0.0492 1.4676 43 1 13.3086 -0.0187 0.7069 44 1 8.7858 -2.3916 -2.0792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746382656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -2.729406 kcal Electronic energy + Delta-G solvation = -27122.479414 eV Core-core repulsion = 23269.163605 eV Total energy + Delta-G solvation = -3853.315809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.18454 -41.45595 -40.00697 -38.77589 -36.21775 -35.49586 -34.98739 -32.62603 -32.30489 -29.92223 -29.15967 -28.00697 -27.32089 -26.10954 -23.90098 -22.94148 -22.91764 -21.58050 -21.21273 -19.89159 -19.38523 -18.58314 -17.95662 -17.45824 -17.36703 -16.79189 -16.57177 -16.15346 -15.81854 -15.53212 -15.25856 -14.91804 -14.84157 -14.57613 -14.42076 -14.16862 -13.87217 -13.51748 -13.39373 -13.06163 -12.98824 -12.91846 -12.89566 -12.76635 -12.50313 -12.23244 -12.13694 -12.01388 -11.95204 -11.89379 -11.49674 -11.20181 -11.06339 -10.88843 -10.44231 -10.15350 -9.81115 -8.63535 -8.49752 -6.27706 0.27524 1.22935 1.29488 1.40812 1.56461 1.71640 2.02160 2.10668 2.46126 2.51491 2.83879 3.06521 3.39777 3.61596 3.67479 3.84675 4.07272 4.15603 4.21002 4.37708 4.45325 4.50364 4.52424 4.63112 4.79628 4.88699 4.89879 4.94136 4.95307 4.96795 5.01059 5.06711 5.13438 5.16928 5.23841 5.24977 5.29256 5.31701 5.44738 5.52699 5.89772 6.08786 6.20537 6.37967 6.64832 6.75441 7.05942 7.39610 7.61260 8.49279 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032703 B = 0.002570 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.993581 B =10893.484480 C =11323.580565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.133 3.867 5 H 0.076 0.924 6 C -0.120 4.120 7 C -0.126 4.126 8 C 0.094 3.906 9 N -0.579 5.579 10 C 0.530 3.470 11 O -0.545 6.545 12 C 0.486 3.514 13 O -0.533 6.533 14 N -0.585 5.585 15 C -0.055 4.055 16 C -0.047 4.047 17 N -0.307 5.307 18 N -0.162 5.162 19 C -0.354 4.354 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.254 1.254 27 C -0.077 4.077 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.421 0.579 42 H 0.176 0.824 43 H 0.278 0.722 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.991 0.730 2.489 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.031 3.969 5 H 0.094 0.906 6 C -0.157 4.157 7 C -0.164 4.164 8 C -0.028 4.028 9 N -0.312 5.312 10 C 0.313 3.687 11 O -0.423 6.423 12 C 0.268 3.732 13 O -0.411 6.411 14 N -0.230 5.230 15 C -0.162 4.162 16 C -0.222 4.222 17 N -0.138 5.138 18 N 0.070 4.930 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.178 1.178 27 C -0.228 4.228 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.258 0.742 42 H 0.193 0.807 43 H 0.088 0.912 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.599 1.323 3.156 20.881 hybrid contribution 0.152 -0.620 -0.978 1.168 sum -20.447 0.703 2.178 20.575 Atomic orbital electron populations 1.21744 0.92024 1.02587 1.02977 1.21418 0.97895 0.96330 0.97155 1.21839 0.99582 0.95777 1.02807 1.22050 0.77071 1.00394 0.97401 0.90613 1.22849 0.98464 1.02452 0.91929 1.22819 0.92391 1.04277 0.96941 1.22663 0.99393 0.96906 0.83839 1.48382 1.07408 1.52707 1.22702 1.19399 0.86282 0.80481 0.82528 1.90709 1.77639 1.39691 1.34287 1.20215 0.87843 0.81926 0.83255 1.90612 1.77332 1.39639 1.33534 1.42094 1.03314 1.49626 1.27944 1.17293 0.82798 1.13276 1.02799 1.24233 0.91240 1.04776 1.02001 1.78153 1.15260 1.17775 1.02659 1.44832 1.05121 1.28186 1.14887 1.20621 0.80689 1.35431 1.11774 0.84160 1.26887 1.04708 0.94249 0.95834 1.70367 1.31011 1.25974 1.17452 0.84643 0.73548 0.79599 0.78374 1.17769 1.20115 1.17763 1.21981 0.84693 1.11451 1.04671 0.90378 0.92266 0.92169 0.93081 0.92328 0.90245 0.95497 0.88530 0.87357 0.87306 0.90274 0.90647 0.91026 0.74162 0.80702 0.91190 0.79660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.85 71.98 0.64 -1.01 16 2 C -0.11 -2.02 2.65 -10.80 -0.03 -2.05 16 3 C -0.14 -2.63 8.77 71.98 0.63 -2.00 16 4 C 0.13 2.47 2.66 45.34 0.12 2.59 16 5 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.12 -1.31 5.28 31.79 0.17 -1.14 16 7 C -0.13 -1.66 7.07 31.91 0.23 -1.43 16 8 C 0.09 2.10 5.86 86.78 0.51 2.60 16 9 N -0.58 -14.75 2.22 -790.20 -1.75 -16.51 16 10 C 0.53 17.17 7.66 87.22 0.67 17.84 16 11 O -0.54 -18.87 15.74 -3.29 -0.05 -18.92 16 12 C 0.49 18.35 7.82 87.22 0.68 19.03 16 13 O -0.53 -22.03 11.07 -3.42 -0.04 -22.07 16 14 N -0.59 -22.75 5.45 -305.34 -1.66 -24.41 16 15 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 16 C -0.05 -2.54 10.84 85.44 0.93 -1.62 16 17 N -0.31 -18.35 10.39 -56.44 -0.59 -18.94 16 18 N -0.16 -9.05 3.73 -189.98 -0.71 -9.75 16 19 C -0.35 -18.75 10.25 84.02 0.86 -17.88 16 20 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 21 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 22 N -0.82 -46.87 11.81 21.66 0.26 -46.61 16 23 Si 1.02 38.30 29.55 68.60 2.03 40.33 16 24 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 25 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 27 C -0.08 -3.66 11.50 83.41 0.96 -2.71 16 28 H 0.08 0.64 7.20 -2.39 -0.02 0.63 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.05 1.28 7.09 -2.39 -0.02 1.27 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.09 6.10 -2.39 -0.01 1.08 16 34 H 0.03 0.64 7.56 -2.38 -0.02 0.62 16 35 H 0.10 0.86 5.47 -2.39 -0.01 0.85 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 2.06 6.51 -2.39 -0.02 2.05 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.42 14.09 8.29 -92.70 -0.77 13.32 16 42 H 0.18 9.22 5.92 -2.91 -0.02 9.20 16 43 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.19 7.12 8.06 -2.91 -0.02 7.09 16 Total: -1.00 -73.14 356.35 4.84 -68.31 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.27 Total: 38.47 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 7.09 Total: 10.10 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.46 Total: -116.22 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.09 Total: -40.99 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -73.14 4.84 -68.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746382656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.577 kcal (2) G-P(sol) polarization free energy of solvation -73.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds