Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00282 * 2 1 4 4 C 1.50696 * 109.47242 * 274.99792 * 3 2 1 5 5 H 1.08000 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99637 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99876 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46989 * 90.00680 * 8 6 4 10 10 H 1.48500 * 109.47145 * 210.00526 * 8 6 4 11 11 H 1.48495 * 109.47479 * 330.00737 * 8 6 4 12 12 S 1.65602 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40381 * 13.16362 * 12 2 1 14 14 O 1.42104 * 106.39943 * 146.08301 * 12 2 1 15 15 N 1.65599 * 107.21825 * 259.61769 * 12 2 1 16 16 C 1.46508 * 119.99679 * 77.04947 * 15 12 2 17 17 C 1.52999 * 109.47126 * 309.26950 * 16 15 12 18 18 C 1.53002 * 109.46716 * 69.26643 * 16 15 12 19 19 C 1.52993 * 109.47078 * 189.26311 * 16 15 12 20 20 C 1.53175 * 109.54855 * 294.82514 * 19 16 15 21 21 C 1.53098 * 109.16031 * 183.24189 * 20 19 16 22 22 O 1.42904 * 109.48963 * 57.47095 * 21 20 19 23 23 C 1.42905 * 114.09787 * 298.89474 * 22 21 20 24 24 C 1.53084 * 109.41893 * 61.15325 * 23 22 21 25 25 H 1.08997 * 109.47188 * 275.32387 * 1 2 3 26 26 H 1.09006 * 109.46780 * 35.31689 * 1 2 3 27 27 H 1.09000 * 109.47106 * 155.31579 * 1 2 3 28 28 H 1.09002 * 109.46608 * 35.00002 * 3 2 1 29 29 H 1.08997 * 109.47320 * 154.99713 * 3 2 1 30 30 H 0.96999 * 119.99488 * 179.97438 * 7 6 4 31 31 H 0.96995 * 120.00754 * 257.04821 * 15 12 2 32 32 H 1.09000 * 109.47716 * 69.37884 * 17 16 15 33 33 H 1.09000 * 109.47087 * 189.38487 * 17 16 15 34 34 H 1.09005 * 109.46970 * 309.38465 * 17 16 15 35 35 H 1.08998 * 109.47215 * 52.23370 * 18 16 15 36 36 H 1.09004 * 109.46604 * 172.23576 * 18 16 15 37 37 H 1.09005 * 109.47081 * 292.22660 * 18 16 15 38 38 H 1.08998 * 109.54114 * 55.00351 * 19 16 15 39 39 H 1.09004 * 109.51920 * 303.06202 * 20 19 16 40 40 H 1.08997 * 109.51913 * 63.24377 * 20 19 16 41 41 H 1.09004 * 109.40613 * 297.49319 * 21 20 19 42 42 H 1.09001 * 109.48785 * 177.50055 * 21 20 19 43 43 H 1.08998 * 109.47609 * 301.16870 * 23 22 21 44 44 H 1.09008 * 109.48802 * 181.14165 * 23 22 21 45 45 H 1.08997 * 109.52906 * 182.48596 * 24 23 22 46 46 H 1.09008 * 109.52193 * 62.29503 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9999 2.9509 -1.6663 7 7 3.5027 3.6473 -0.6704 8 14 3.1778 3.5672 -3.4206 9 1 2.0169 4.4276 -3.7630 10 1 4.4309 4.3544 -3.5441 11 1 3.2269 2.4096 -4.3494 12 16 2.2929 -1.4342 -0.0006 13 8 1.3440 -2.4452 -0.3115 14 8 3.4732 -1.2157 -0.7612 15 7 2.7848 -1.7169 1.5551 16 6 1.8264 -2.2074 2.5487 17 6 0.5785 -1.3223 2.5339 18 6 1.4343 -3.6474 2.2116 19 6 2.4654 -2.1648 3.9381 20 6 3.6382 -3.1486 3.9932 21 6 4.2197 -3.1585 5.4094 22 8 3.1952 -3.5058 6.3431 23 6 2.0956 -2.5934 6.3690 24 6 1.4274 -2.5625 4.9921 25 1 -0.3633 0.0953 1.0232 26 1 -0.3633 0.8386 -0.5941 27 1 -0.3633 -0.9338 -0.4292 28 1 1.6501 2.0042 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9662 4.4809 -0.8469 31 1 3.7075 -1.5578 1.8086 32 1 0.0319 -1.4803 1.6041 33 1 -0.0599 -1.5800 3.3790 34 1 0.8744 -0.2758 2.6079 35 1 2.3344 -4.2492 2.0864 36 1 0.8318 -4.0589 3.0214 37 1 0.8573 -3.6598 1.2869 38 1 2.8253 -1.1566 4.1432 39 1 3.2872 -4.1485 3.7379 40 1 4.4065 -2.8394 3.2846 41 1 4.6086 -2.1686 5.6482 42 1 5.0263 -3.8895 5.4662 43 1 2.4567 -1.5962 6.6203 44 1 1.3719 -2.9172 7.1171 45 1 0.6161 -1.8346 4.9971 46 1 1.0303 -3.5502 4.7576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785397933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = -122.591744 kcal Electronic energy + Delta-G solvation = -27543.596343 eV Core-core repulsion = 23788.234114 eV Total energy + Delta-G solvation = -3755.362230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16096 -37.62777 -36.44877 -35.54906 -35.13804 -32.79930 -32.46979 -31.48934 -29.90358 -28.03795 -27.09491 -25.36141 -25.01291 -23.58459 -22.27766 -21.50749 -19.33760 -18.56647 -17.46253 -16.87337 -16.48890 -16.27697 -16.03854 -15.75488 -15.15262 -14.94327 -14.62674 -14.26362 -14.11633 -13.69011 -13.54332 -13.31299 -13.22731 -12.74239 -12.37431 -12.20368 -12.19560 -12.00298 -11.84079 -11.65595 -11.43930 -11.27338 -11.19754 -11.08920 -11.04554 -10.95508 -10.71991 -10.68120 -10.66019 -10.50377 -10.19976 -10.02602 -9.74263 -9.63165 -9.28151 -8.45681 -8.04135 -6.07497 -4.10867 1.28857 3.30922 3.37364 3.43724 3.53435 3.69417 4.10596 4.43603 4.46205 4.50468 4.61512 4.81508 5.00077 5.05095 5.09072 5.11051 5.15724 5.27852 5.29569 5.35921 5.47337 5.51271 5.58652 5.65315 5.69337 5.73551 5.85795 5.86335 5.93529 5.98909 6.02586 6.10208 6.19943 6.34180 6.40250 6.57213 6.59337 6.99752 7.14065 7.27318 7.41251 7.62807 7.90966 8.20024 8.91961 9.54413 11.01041 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.003862 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.964855 B = 7248.615877 C = 7612.782939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.997 5.997 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.783 3.217 13 O -0.997 6.997 14 O -0.969 6.969 15 N -1.125 6.125 16 C 0.192 3.808 17 C -0.197 4.197 18 C -0.181 4.181 19 C -0.085 4.085 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.385 6.385 23 C 0.061 3.939 24 C -0.154 4.154 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.410 0.590 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -11.946 13.993 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.138 3.862 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.791 3.209 13 O -0.980 6.980 14 O -0.952 6.952 15 N -0.882 5.882 16 C 0.103 3.897 17 C -0.254 4.254 18 C -0.240 4.240 19 C -0.105 4.105 20 C -0.193 4.193 21 C -0.016 4.016 22 O -0.304 6.304 23 C -0.016 4.016 24 C -0.192 4.192 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.243 0.757 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.295 -12.523 13.326 18.784 hybrid contribution 0.556 1.189 -0.704 1.489 sum -3.739 -11.334 12.622 17.371 Atomic orbital electron populations 1.21585 0.80447 1.02960 1.00968 1.57605 1.14107 1.23322 1.88864 1.18970 0.90616 0.79077 0.97546 1.21511 1.35893 1.06114 0.93017 0.92142 1.24931 0.95157 0.96523 0.97470 1.69917 1.37531 1.15337 1.30924 0.86515 0.77502 0.78822 0.84753 1.20637 1.21080 1.19678 1.01850 0.73255 0.72936 0.72833 1.93472 1.63648 1.57354 1.83571 1.93642 1.48702 1.85833 1.67058 1.56375 1.19279 1.82549 1.30044 1.19913 0.88289 0.93818 0.87660 1.22987 0.97490 1.00811 1.04157 1.22696 1.02447 0.95029 1.03812 1.21383 0.95568 0.99929 0.93652 1.22339 0.98423 1.00980 0.97566 1.22593 0.90123 1.00701 0.88206 1.87916 1.31182 1.50893 1.60421 1.22584 0.88769 0.93416 0.96833 1.22412 0.98599 1.03242 0.94926 0.93360 0.90896 0.91335 0.94779 0.95076 0.92739 0.75695 0.90391 0.90576 0.90636 0.92219 0.91814 0.89033 0.90180 0.90255 0.90571 0.93186 0.88967 0.93200 0.88978 0.90101 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 8.67 59.84 0.52 1.97 16 2 N -1.00 -20.02 2.65 -123.05 -0.33 -20.34 16 3 C 0.26 6.37 5.11 -5.19 -0.03 6.34 16 4 C -0.53 -14.70 9.38 -34.44 -0.32 -15.02 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 S 2.78 53.88 5.51 -107.50 -0.59 53.29 16 13 O -1.00 -19.35 12.84 -57.17 -0.73 -20.08 16 14 O -0.97 -23.28 17.50 -57.17 -1.00 -24.28 16 15 N -1.12 -16.50 5.41 0.54 0.00 -16.49 16 16 C 0.19 2.32 0.55 -131.82 -0.07 2.25 16 17 C -0.20 -2.32 6.06 37.16 0.23 -2.10 16 18 C -0.18 -2.19 7.45 37.16 0.28 -1.91 16 19 C -0.09 -0.86 1.71 -90.44 -0.15 -1.01 16 20 C -0.16 -1.49 4.87 -26.59 -0.13 -1.62 16 21 C 0.06 0.55 6.84 37.21 0.25 0.80 16 22 O -0.39 -4.03 10.77 -35.23 -0.38 -4.41 16 23 C 0.06 0.51 6.84 37.20 0.25 0.77 16 24 C -0.15 -1.31 4.68 -26.59 -0.12 -1.43 16 25 H 0.05 0.67 5.55 -51.93 -0.29 0.38 16 26 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 27 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 28 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.41 5.50 7.57 -34.48 -0.26 5.24 16 32 H 0.08 1.00 4.24 -51.93 -0.22 0.78 16 33 H 0.08 0.70 5.91 -51.93 -0.31 0.40 16 34 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 35 H 0.06 0.70 6.76 -51.93 -0.35 0.35 16 36 H 0.06 0.63 6.18 -51.93 -0.32 0.31 16 37 H 0.09 1.31 5.75 -51.93 -0.30 1.01 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.78 6.36 -51.93 -0.33 0.45 16 40 H 0.08 0.72 7.10 -51.93 -0.37 0.35 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.08 0.61 6.35 -51.93 -0.33 0.28 16 46 H 0.08 0.67 6.29 -51.92 -0.33 0.35 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -33.30 349.75 -8.50 -41.80 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.06 Total: 2.99 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 0.60 Total: -9.33 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.41 Total: -62.07 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -2.11 Total: -48.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -0.59 Total: 53.29 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.30 -8.50 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785397933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.792 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds