Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00282 * 2 1 4 4 C 1.50696 * 109.47242 * 274.99792 * 3 2 1 5 5 H 1.08000 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99637 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 119.99876 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46989 * 90.00680 * 8 6 4 10 10 H 1.48500 * 109.47145 * 210.00526 * 8 6 4 11 11 H 1.48495 * 109.47479 * 330.00737 * 8 6 4 12 12 S 1.65602 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40381 * 13.16362 * 12 2 1 14 14 O 1.42104 * 106.39943 * 146.08301 * 12 2 1 15 15 N 1.65599 * 107.21825 * 259.61769 * 12 2 1 16 16 C 1.46508 * 119.99679 * 77.04947 * 15 12 2 17 17 C 1.52999 * 109.47126 * 309.26950 * 16 15 12 18 18 C 1.53002 * 109.46716 * 69.26643 * 16 15 12 19 19 C 1.52993 * 109.47078 * 189.26311 * 16 15 12 20 20 C 1.53175 * 109.54855 * 294.82514 * 19 16 15 21 21 C 1.53098 * 109.16031 * 183.24189 * 20 19 16 22 22 O 1.42904 * 109.48963 * 57.47095 * 21 20 19 23 23 C 1.42905 * 114.09787 * 298.89474 * 22 21 20 24 24 C 1.53084 * 109.41893 * 61.15325 * 23 22 21 25 25 H 1.08997 * 109.47188 * 275.32387 * 1 2 3 26 26 H 1.09006 * 109.46780 * 35.31689 * 1 2 3 27 27 H 1.09000 * 109.47106 * 155.31579 * 1 2 3 28 28 H 1.09002 * 109.46608 * 35.00002 * 3 2 1 29 29 H 1.08997 * 109.47320 * 154.99713 * 3 2 1 30 30 H 0.96999 * 119.99488 * 179.97438 * 7 6 4 31 31 H 0.96995 * 120.00754 * 257.04821 * 15 12 2 32 32 H 1.09000 * 109.47716 * 69.37884 * 17 16 15 33 33 H 1.09000 * 109.47087 * 189.38487 * 17 16 15 34 34 H 1.09005 * 109.46970 * 309.38465 * 17 16 15 35 35 H 1.08998 * 109.47215 * 52.23370 * 18 16 15 36 36 H 1.09004 * 109.46604 * 172.23576 * 18 16 15 37 37 H 1.09005 * 109.47081 * 292.22660 * 18 16 15 38 38 H 1.08998 * 109.54114 * 55.00351 * 19 16 15 39 39 H 1.09004 * 109.51920 * 303.06202 * 20 19 16 40 40 H 1.08997 * 109.51913 * 63.24377 * 20 19 16 41 41 H 1.09004 * 109.40613 * 297.49319 * 21 20 19 42 42 H 1.09001 * 109.48785 * 177.50055 * 21 20 19 43 43 H 1.08998 * 109.47609 * 301.16870 * 23 22 21 44 44 H 1.09008 * 109.48802 * 181.14165 * 23 22 21 45 45 H 1.08997 * 109.52906 * 182.48596 * 24 23 22 46 46 H 1.09008 * 109.52193 * 62.29503 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9999 2.9509 -1.6663 7 7 3.5027 3.6473 -0.6704 8 14 3.1778 3.5672 -3.4206 9 1 2.0169 4.4276 -3.7630 10 1 4.4309 4.3544 -3.5441 11 1 3.2269 2.4096 -4.3494 12 16 2.2929 -1.4342 -0.0006 13 8 1.3440 -2.4452 -0.3115 14 8 3.4732 -1.2157 -0.7612 15 7 2.7848 -1.7169 1.5551 16 6 1.8264 -2.2074 2.5487 17 6 0.5785 -1.3223 2.5339 18 6 1.4343 -3.6474 2.2116 19 6 2.4654 -2.1648 3.9381 20 6 3.6382 -3.1486 3.9932 21 6 4.2197 -3.1585 5.4094 22 8 3.1952 -3.5058 6.3431 23 6 2.0956 -2.5934 6.3690 24 6 1.4274 -2.5625 4.9921 25 1 -0.3633 0.0953 1.0232 26 1 -0.3633 0.8386 -0.5941 27 1 -0.3633 -0.9338 -0.4292 28 1 1.6501 2.0042 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9662 4.4809 -0.8469 31 1 3.7075 -1.5578 1.8086 32 1 0.0319 -1.4803 1.6041 33 1 -0.0599 -1.5800 3.3790 34 1 0.8744 -0.2758 2.6079 35 1 2.3344 -4.2492 2.0864 36 1 0.8318 -4.0589 3.0214 37 1 0.8573 -3.6598 1.2869 38 1 2.8253 -1.1566 4.1432 39 1 3.2872 -4.1485 3.7379 40 1 4.4065 -2.8394 3.2846 41 1 4.6086 -2.1686 5.6482 42 1 5.0263 -3.8895 5.4662 43 1 2.4567 -1.5962 6.6203 44 1 1.3719 -2.9172 7.1171 45 1 0.6161 -1.8346 4.9971 46 1 1.0303 -3.5502 4.7576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785397933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = -147.339471 kcal Electronic energy + Delta-G solvation = -27544.669485 eV Core-core repulsion = 23788.234114 eV Total energy + Delta-G solvation = -3756.435372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97793 -38.68212 -37.93504 -37.22671 -36.80823 -34.53282 -33.73993 -32.22641 -30.94382 -29.73460 -28.20483 -26.75987 -26.09489 -24.30761 -24.17163 -22.39895 -20.32604 -19.91286 -18.97161 -18.40241 -18.35700 -17.38354 -16.94460 -16.89661 -16.56960 -16.14159 -15.68937 -15.52370 -15.12043 -15.04020 -14.80689 -14.48879 -14.27127 -14.07199 -13.90629 -13.66187 -13.46477 -13.28917 -13.08244 -12.91839 -12.89217 -12.84267 -12.59656 -12.47520 -12.38567 -12.27661 -12.11587 -11.94894 -11.85479 -11.73659 -11.55312 -11.44913 -11.00264 -10.60156 -10.46728 -10.36188 -9.74168 -8.20860 -6.31813 -0.24580 1.37763 1.40176 1.50843 2.09128 2.40239 2.65141 3.03636 3.10012 3.49508 3.60202 3.71323 3.83277 4.06795 4.11599 4.15138 4.26286 4.33877 4.36800 4.44786 4.64534 4.69177 4.73221 4.79496 4.81639 4.84871 4.86329 4.96309 5.01834 5.03530 5.08643 5.13442 5.16613 5.19690 5.25631 5.34702 5.43326 5.52508 5.65426 5.69693 5.88917 6.10550 6.20866 6.32546 6.76328 7.36885 8.86304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.003862 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.964855 B = 7248.615877 C = 7612.782939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.001 6.001 3 C 0.276 3.724 4 C -0.548 4.548 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.277 1.277 12 S 2.796 3.204 13 O -0.998 6.998 14 O -1.021 7.021 15 N -1.112 6.112 16 C 0.186 3.814 17 C -0.201 4.201 18 C -0.181 4.181 19 C -0.081 4.081 20 C -0.156 4.156 21 C 0.060 3.940 22 O -0.402 6.402 23 C 0.057 3.943 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.416 0.584 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 -12.366 15.182 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.842 5.842 3 C 0.152 3.848 4 C -0.587 4.587 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.778 3.222 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.202 1.202 12 S 2.805 3.195 13 O -0.982 6.982 14 O -1.005 7.005 15 N -0.874 5.874 16 C 0.098 3.902 17 C -0.258 4.258 18 C -0.239 4.239 19 C -0.101 4.101 20 C -0.194 4.194 21 C -0.016 4.016 22 O -0.321 6.321 23 C -0.019 4.019 24 C -0.187 4.187 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.251 0.749 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.276 -12.949 14.513 20.153 hybrid contribution 0.821 1.241 -0.993 1.789 sum -4.455 -11.708 13.520 18.432 Atomic orbital electron populations 1.21805 0.78483 1.03093 1.03013 1.57480 1.15434 1.21917 1.89409 1.18528 0.90158 0.80551 0.95565 1.21852 1.36066 1.06434 0.94352 0.93294 1.25697 0.94877 0.96779 1.01255 1.69996 1.37992 1.15731 1.32616 0.85629 0.78169 0.78245 0.80127 1.19035 1.20309 1.20180 1.01235 0.72229 0.72616 0.73447 1.93474 1.63508 1.56981 1.84223 1.93568 1.50843 1.86475 1.69584 1.56036 1.20182 1.82143 1.29025 1.20213 0.88080 0.93910 0.87972 1.23027 0.97605 1.00224 1.04984 1.22678 1.02526 0.95008 1.03690 1.21354 0.96156 1.00007 0.92584 1.22342 0.98300 1.00726 0.98007 1.22639 0.90180 1.01241 0.87564 1.87898 1.31849 1.51703 1.60699 1.22732 0.88623 0.93432 0.97160 1.22409 0.98339 1.03732 0.94253 0.90142 0.91804 0.90372 0.95294 0.96884 0.92403 0.74895 0.91451 0.87489 0.91453 0.92252 0.89270 0.91219 0.90468 0.90395 0.90842 0.92872 0.88054 0.92869 0.87359 0.88706 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.65 8.67 127.77 1.11 3.76 16 2 N -1.00 -40.40 2.65 -543.23 -1.44 -41.83 16 3 C 0.28 13.74 5.11 85.63 0.44 14.18 16 4 C -0.55 -31.09 9.38 25.60 0.24 -30.85 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.76 5.46 84.66 0.46 1.22 16 7 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 8 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 S 2.80 109.08 5.51 -56.49 -0.31 108.77 16 13 O -1.00 -38.49 12.84 -128.00 -1.64 -40.13 16 14 O -1.02 -50.42 17.50 -128.00 -2.24 -52.66 16 15 N -1.11 -32.17 5.41 -152.21 -0.82 -33.00 16 16 C 0.19 4.19 0.55 3.60 0.00 4.19 16 17 C -0.20 -4.30 6.06 71.98 0.44 -3.86 16 18 C -0.18 -4.03 7.45 71.98 0.54 -3.49 16 19 C -0.08 -1.46 1.71 -10.68 -0.02 -1.48 16 20 C -0.16 -2.75 4.87 30.69 0.15 -2.60 16 21 C 0.06 0.99 6.84 72.01 0.49 1.49 16 22 O -0.40 -7.56 10.77 -148.98 -1.60 -9.16 16 23 C 0.06 0.81 6.84 72.01 0.49 1.30 16 24 C -0.15 -2.08 4.68 30.68 0.14 -1.94 16 25 H 0.08 2.09 5.55 -2.39 -0.01 2.08 16 26 H 0.06 2.18 8.11 -2.38 -0.02 2.17 16 27 H 0.08 2.39 6.76 -2.39 -0.02 2.37 16 28 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 29 H 0.01 0.70 7.89 -2.39 -0.02 0.68 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.42 11.13 7.57 -96.75 -0.73 10.40 16 32 H 0.07 1.60 4.24 -2.39 -0.01 1.59 16 33 H 0.11 1.60 5.91 -2.39 -0.01 1.59 16 34 H 0.07 1.57 7.54 -2.38 -0.02 1.56 16 35 H 0.06 1.32 6.76 -2.39 -0.02 1.30 16 36 H 0.09 1.52 6.18 -2.39 -0.01 1.50 16 37 H 0.07 1.90 5.75 -2.38 -0.01 1.88 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.40 6.36 -2.38 -0.02 1.38 16 40 H 0.07 1.32 7.10 -2.39 -0.02 1.30 16 41 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 1.07 6.35 -2.39 -0.02 1.05 16 46 H 0.08 1.11 6.29 -2.38 -0.01 1.10 16 Total: -1.00 -71.50 349.75 -1.01 -72.50 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.26 Total: 20.17 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.48 Total: -18.09 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -1.98 Total: -128.25 kcal Atomic # 8 Polarization: -96.46 SS G_CDS: -5.49 Total: -101.95 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 109.08 SS G_CDS: -0.31 Total: 108.77 kcal Total: -71.50 -1.01 -72.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785397933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.835 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds