Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 H 1.09001 * 109.47672 * 302.70001 * 3 2 1 5 5 N 1.46504 * 109.47165 * 62.69761 * 3 2 1 6 6 S 1.65596 * 120.00023 * 233.98357 * 5 3 2 7 7 O 1.42098 * 106.40128 * 178.60927 * 6 5 3 8 8 O 1.42099 * 106.40057 * 311.52624 * 6 5 3 9 9 N 1.65596 * 107.22197 * 65.06653 * 6 5 3 10 10 C 1.46500 * 120.00116 * 266.60517 * 9 6 5 11 11 C 1.46504 * 120.00021 * 86.60277 * 9 6 5 12 12 C 1.50696 * 109.47268 * 94.99959 * 11 9 6 13 13 H 1.07998 * 120.00058 * 0.02562 * 12 11 9 14 14 C 1.37883 * 119.99604 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99532 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00302 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47322 * 89.99308 * 16 14 12 18 18 H 1.48498 * 109.47250 * 209.99800 * 16 14 12 19 19 H 1.48508 * 109.46979 * 329.99548 * 16 14 12 20 20 C 1.52999 * 109.47128 * 182.69189 * 3 2 1 21 21 H 1.08998 * 109.52198 * 300.00647 * 20 3 2 22 22 C 1.53177 * 109.52323 * 179.87800 * 20 3 2 23 23 C 1.53179 * 109.03478 * 183.05434 * 22 20 3 24 24 C 1.53097 * 109.16485 * 56.97868 * 23 22 20 25 25 O 1.42900 * 109.41152 * 302.39129 * 24 23 22 26 26 C 1.42904 * 114.09956 * 61.16356 * 25 24 23 27 27 H 1.08997 * 109.47736 * 58.34053 * 1 2 3 28 28 H 1.09001 * 109.47326 * 178.33922 * 1 2 3 29 29 H 1.09002 * 109.47227 * 298.33641 * 1 2 3 30 30 H 1.09003 * 109.46866 * 240.00575 * 2 1 3 31 31 H 1.08994 * 109.46979 * 120.00187 * 2 1 3 32 32 H 0.97004 * 120.00011 * 53.97875 * 5 3 2 33 33 H 1.08991 * 109.47572 * 90.36351 * 10 9 6 34 34 H 1.09003 * 109.47056 * 210.36489 * 10 9 6 35 35 H 1.08998 * 109.46872 * 330.35892 * 10 9 6 36 36 H 1.09007 * 109.46869 * 215.00403 * 11 9 6 37 37 H 1.09005 * 109.46939 * 334.99469 * 11 9 6 38 38 H 0.96997 * 119.99586 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.54432 * 302.91903 * 22 20 3 40 40 H 1.08995 * 109.54352 * 63.10012 * 22 20 3 41 41 H 1.08995 * 109.52391 * 176.88403 * 23 22 20 42 42 H 1.08995 * 109.52138 * 297.07565 * 23 22 20 43 43 H 1.09002 * 109.47560 * 62.37448 * 24 23 22 44 44 H 1.08996 * 109.48138 * 182.39620 * 24 23 22 45 45 H 1.08996 * 109.48141 * 178.85860 * 26 25 24 46 46 H 1.08994 * 109.48218 * 58.81906 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6376 1.9702 -0.8648 5 7 1.6054 2.1141 1.2274 6 16 0.7745 3.5438 1.1392 7 8 0.4726 3.9156 2.4770 8 8 1.5021 4.3763 0.2465 9 7 -0.6747 3.2242 0.4043 10 6 -0.8131 3.3887 -1.0448 11 6 -1.8183 2.7769 1.2033 12 6 -2.6732 3.9639 1.5653 13 1 -2.3930 4.9526 1.2331 14 6 -3.8137 3.7875 2.3198 15 7 -4.5595 4.8236 2.6361 16 14 -4.2987 2.0774 2.8939 17 1 -3.6807 1.8054 4.2165 18 1 -5.7767 1.9955 3.0118 19 1 -3.8241 1.0718 1.9096 20 6 3.5684 1.4431 -0.0677 21 1 3.9715 0.9156 0.7967 22 6 4.0801 2.8868 -0.0709 23 6 5.6050 2.8761 -0.2159 24 6 5.9831 2.1229 -1.4940 25 8 5.4504 0.7980 -1.4396 26 6 4.0251 0.7452 -1.3516 27 1 -0.3634 0.5394 -0.8747 28 1 -0.3634 -1.0272 -0.0298 29 1 -0.3634 0.4878 0.9045 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.8043 1.7212 2.0917 33 1 -0.5681 2.4503 -1.5421 34 1 -1.8395 3.6685 -1.2823 35 1 -0.1349 4.1698 -1.3882 36 1 -2.4092 2.0660 0.6257 37 1 -1.4597 2.2962 2.1136 38 1 -5.3616 4.6995 3.1672 39 1 3.6382 3.4285 -0.9072 40 1 3.8049 3.3732 0.8649 41 1 5.9725 3.9005 -0.2746 42 1 6.0493 2.3776 0.6456 43 1 5.5722 2.6447 -2.3583 44 1 7.0686 2.0752 -1.5802 45 1 3.7002 -0.2951 -1.3351 46 1 3.5888 1.2489 -2.2141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882757668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = -135.379527 kcal Electronic energy + Delta-G solvation = -27569.514646 eV Core-core repulsion = 23813.597896 eV Total energy + Delta-G solvation = -3755.916750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.86055 -37.22080 -36.57708 -35.66966 -35.24151 -33.34234 -32.40168 -31.71387 -31.12543 -28.43010 -26.07236 -25.23725 -24.89683 -23.05900 -21.93095 -21.02918 -20.35622 -19.05501 -17.37060 -17.02084 -16.70130 -16.51753 -16.28855 -15.78664 -15.09051 -14.92193 -14.58843 -14.34391 -14.25644 -13.92579 -13.55715 -13.33409 -13.21122 -12.72663 -12.54131 -12.52153 -12.38053 -11.91035 -11.78675 -11.78059 -11.51442 -11.40365 -11.38459 -11.25784 -11.14377 -11.02602 -10.86374 -10.82710 -10.68487 -10.44018 -10.35671 -10.24859 -9.64263 -9.57423 -9.32403 -8.61479 -8.14655 -6.10065 -4.09351 1.13245 3.24449 3.29360 3.31277 3.41533 3.66985 4.04445 4.35893 4.41126 4.59042 4.69520 4.80544 4.91376 4.93550 4.99526 5.04947 5.13588 5.20883 5.23409 5.31294 5.43621 5.49832 5.50401 5.63850 5.67124 5.74782 5.76520 5.80159 5.92501 5.94386 5.98528 6.08418 6.16418 6.27680 6.35539 6.35887 6.45380 6.68140 6.98301 6.99702 7.12453 7.40051 7.56261 8.47140 8.95288 9.48822 11.03614 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.004149 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.619121 B = 6747.001851 C = 7293.683526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.087 0.913 5 N -1.126 6.126 6 S 2.779 3.221 7 O -0.964 6.964 8 O -0.990 6.990 9 N -0.989 5.989 10 C 0.092 3.908 11 C 0.231 3.769 12 C -0.532 4.532 13 H 0.077 0.923 14 C 0.073 3.927 15 N -0.895 5.895 16 Si 0.871 3.129 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.264 1.264 20 C -0.132 4.132 21 H 0.083 0.917 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.059 3.941 25 O -0.383 6.383 26 C 0.065 3.935 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.078 -10.831 -8.986 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.173 4.173 3 C 0.056 3.944 4 H 0.105 0.895 5 N -0.884 5.884 6 S 2.787 3.213 7 O -0.948 6.948 8 O -0.973 6.973 9 N -0.831 5.831 10 C -0.054 4.054 11 C 0.108 3.892 12 C -0.571 4.571 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.698 3.302 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.153 4.153 21 H 0.101 0.899 22 C -0.154 4.154 23 C -0.194 4.194 24 C -0.018 4.018 25 O -0.302 6.302 26 C -0.012 4.012 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.245 0.755 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.263 -9.995 -8.766 21.789 hybrid contribution -0.731 -1.031 0.774 1.483 sum 16.532 -11.026 -7.992 21.418 Atomic orbital electron populations 1.21871 0.94766 1.01697 1.03226 1.21974 0.97092 0.95699 1.02522 1.20671 0.92924 0.93949 0.86825 0.89471 1.56325 1.73408 1.45192 1.13426 1.02056 0.72672 0.73170 0.73435 1.93657 1.83960 1.80661 1.36483 1.93540 1.71862 1.64798 1.67133 1.57349 1.26626 1.83566 1.15512 1.21432 1.04275 0.99824 0.79865 1.19394 0.84094 0.96164 0.89585 1.21388 1.07367 0.94697 1.33637 0.90447 1.24877 0.96087 0.96698 0.95338 1.69897 1.15516 1.29741 1.38142 0.86938 0.78118 0.85177 0.79984 1.19854 1.20957 1.18891 1.22196 0.95627 0.97698 0.99733 0.89862 1.21638 0.94402 0.95507 1.03866 1.22204 0.97171 1.01086 0.98925 1.22596 0.98866 0.83518 0.96770 1.87920 1.20636 1.27118 1.94522 1.22688 0.81194 1.01316 0.95994 0.92221 0.92788 0.91813 0.90954 0.91317 0.75521 0.94223 0.90156 0.91246 0.94868 0.95645 0.92525 0.90583 0.91320 0.90841 0.91320 0.93111 0.89158 0.88528 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.76 37.16 0.36 -1.39 16 2 C -0.13 -1.22 5.35 -26.73 -0.14 -1.37 16 3 C 0.16 1.77 1.90 -67.93 -0.13 1.64 16 4 H 0.09 0.96 7.34 -51.93 -0.38 0.58 16 5 N -1.13 -14.79 4.13 -4.89 -0.02 -14.81 16 6 S 2.78 51.12 5.94 -107.50 -0.64 50.49 16 7 O -0.96 -22.34 17.23 -57.17 -0.99 -23.33 16 8 O -0.99 -18.72 14.69 -57.17 -0.84 -19.56 16 9 N -0.99 -18.78 3.23 -123.05 -0.40 -19.17 16 10 C 0.09 1.45 10.39 59.85 0.62 2.07 16 11 C 0.23 5.20 3.40 -5.19 -0.02 5.19 16 12 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 13 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 16 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 20 C -0.13 -1.33 2.16 -90.48 -0.19 -1.52 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.12 -1.35 4.18 -26.55 -0.11 -1.46 16 23 C -0.16 -1.51 6.14 -26.59 -0.16 -1.67 16 24 C 0.06 0.53 6.84 37.21 0.25 0.79 16 25 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 26 C 0.07 0.60 5.71 37.21 0.21 0.81 16 27 H 0.06 0.66 6.76 -51.93 -0.35 0.31 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.84 6.97 -51.93 -0.36 0.47 16 30 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.41 4.74 8.96 -34.47 -0.31 4.43 16 33 H 0.04 0.49 6.61 -51.93 -0.34 0.14 16 34 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 35 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 36 H 0.03 0.71 7.17 -51.92 -0.37 0.34 16 37 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 39 H 0.08 0.96 7.83 -51.93 -0.41 0.55 16 40 H 0.07 0.90 7.34 -51.93 -0.38 0.51 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.74 6.52 -51.93 -0.34 0.40 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -34.36 364.96 -9.10 -43.46 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.70 Total: 2.55 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 0.25 Total: -10.18 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.36 Total: -60.57 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.20 Total: -47.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.64 Total: 50.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.36 -9.10 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882757668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.919 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds