Wall clock time and date at job start Tue Mar 31 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 H 1.09001 * 109.47672 * 302.70001 * 3 2 1 5 5 N 1.46504 * 109.47165 * 62.69761 * 3 2 1 6 6 S 1.65596 * 120.00023 * 233.98357 * 5 3 2 7 7 O 1.42098 * 106.40128 * 178.60927 * 6 5 3 8 8 O 1.42099 * 106.40057 * 311.52624 * 6 5 3 9 9 N 1.65596 * 107.22197 * 65.06653 * 6 5 3 10 10 C 1.46500 * 120.00116 * 266.60517 * 9 6 5 11 11 C 1.46504 * 120.00021 * 86.60277 * 9 6 5 12 12 C 1.50696 * 109.47268 * 94.99959 * 11 9 6 13 13 H 1.07998 * 120.00058 * 0.02562 * 12 11 9 14 14 C 1.37883 * 119.99604 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99532 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00302 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47322 * 89.99308 * 16 14 12 18 18 H 1.48498 * 109.47250 * 209.99800 * 16 14 12 19 19 H 1.48508 * 109.46979 * 329.99548 * 16 14 12 20 20 C 1.52999 * 109.47128 * 182.69189 * 3 2 1 21 21 H 1.08998 * 109.52198 * 300.00647 * 20 3 2 22 22 C 1.53177 * 109.52323 * 179.87800 * 20 3 2 23 23 C 1.53179 * 109.03478 * 183.05434 * 22 20 3 24 24 C 1.53097 * 109.16485 * 56.97868 * 23 22 20 25 25 O 1.42900 * 109.41152 * 302.39129 * 24 23 22 26 26 C 1.42904 * 114.09956 * 61.16356 * 25 24 23 27 27 H 1.08997 * 109.47736 * 58.34053 * 1 2 3 28 28 H 1.09001 * 109.47326 * 178.33922 * 1 2 3 29 29 H 1.09002 * 109.47227 * 298.33641 * 1 2 3 30 30 H 1.09003 * 109.46866 * 240.00575 * 2 1 3 31 31 H 1.08994 * 109.46979 * 120.00187 * 2 1 3 32 32 H 0.97004 * 120.00011 * 53.97875 * 5 3 2 33 33 H 1.08991 * 109.47572 * 90.36351 * 10 9 6 34 34 H 1.09003 * 109.47056 * 210.36489 * 10 9 6 35 35 H 1.08998 * 109.46872 * 330.35892 * 10 9 6 36 36 H 1.09007 * 109.46869 * 215.00403 * 11 9 6 37 37 H 1.09005 * 109.46939 * 334.99469 * 11 9 6 38 38 H 0.96997 * 119.99586 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.54432 * 302.91903 * 22 20 3 40 40 H 1.08995 * 109.54352 * 63.10012 * 22 20 3 41 41 H 1.08995 * 109.52391 * 176.88403 * 23 22 20 42 42 H 1.08995 * 109.52138 * 297.07565 * 23 22 20 43 43 H 1.09002 * 109.47560 * 62.37448 * 24 23 22 44 44 H 1.08996 * 109.48138 * 182.39620 * 24 23 22 45 45 H 1.08996 * 109.48141 * 178.85860 * 26 25 24 46 46 H 1.08994 * 109.48218 * 58.81906 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6376 1.9702 -0.8648 5 7 1.6054 2.1141 1.2274 6 16 0.7745 3.5438 1.1392 7 8 0.4726 3.9156 2.4770 8 8 1.5021 4.3763 0.2465 9 7 -0.6747 3.2242 0.4043 10 6 -0.8131 3.3887 -1.0448 11 6 -1.8183 2.7769 1.2033 12 6 -2.6732 3.9639 1.5653 13 1 -2.3930 4.9526 1.2331 14 6 -3.8137 3.7875 2.3198 15 7 -4.5595 4.8236 2.6361 16 14 -4.2987 2.0774 2.8939 17 1 -3.6807 1.8054 4.2165 18 1 -5.7767 1.9955 3.0118 19 1 -3.8241 1.0718 1.9096 20 6 3.5684 1.4431 -0.0677 21 1 3.9715 0.9156 0.7967 22 6 4.0801 2.8868 -0.0709 23 6 5.6050 2.8761 -0.2159 24 6 5.9831 2.1229 -1.4940 25 8 5.4504 0.7980 -1.4396 26 6 4.0251 0.7452 -1.3516 27 1 -0.3634 0.5394 -0.8747 28 1 -0.3634 -1.0272 -0.0298 29 1 -0.3634 0.4878 0.9045 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.8043 1.7212 2.0917 33 1 -0.5681 2.4503 -1.5421 34 1 -1.8395 3.6685 -1.2823 35 1 -0.1349 4.1698 -1.3882 36 1 -2.4092 2.0660 0.6257 37 1 -1.4597 2.2962 2.1136 38 1 -5.3616 4.6995 3.1672 39 1 3.6382 3.4285 -0.9072 40 1 3.8049 3.3732 0.8649 41 1 5.9725 3.9005 -0.2746 42 1 6.0493 2.3776 0.6456 43 1 5.5722 2.6447 -2.3583 44 1 7.0686 2.0752 -1.5802 45 1 3.7002 -0.2951 -1.3351 46 1 3.5888 1.2489 -2.2141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882757668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:43 Heat of formation + Delta-G solvation = -162.160504 kcal Electronic energy + Delta-G solvation = -27570.675956 eV Core-core repulsion = 23813.597896 eV Total energy + Delta-G solvation = -3757.078060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64699 -38.36510 -37.91533 -37.24389 -36.84454 -34.51319 -34.13810 -32.70884 -31.86725 -30.27082 -26.92270 -26.77871 -25.69889 -23.93890 -23.67236 -21.87278 -21.19706 -20.38888 -19.15506 -18.67740 -18.18589 -17.54788 -17.15044 -16.95356 -16.39723 -16.02629 -15.69774 -15.58150 -15.18759 -15.10035 -14.65791 -14.59136 -14.50108 -14.23196 -13.97176 -13.52745 -13.43843 -13.37814 -13.14804 -13.09218 -12.94789 -12.92246 -12.68592 -12.36947 -12.29406 -12.18102 -12.02585 -11.96495 -11.90411 -11.71497 -11.61203 -11.52816 -11.11519 -10.78227 -10.46478 -10.29274 -9.73924 -8.28675 -6.34299 -0.32714 1.36423 1.40427 1.48779 2.04606 2.35380 2.65346 2.98806 3.05425 3.46409 3.58742 3.82728 3.88402 4.01981 4.06647 4.13984 4.25321 4.27343 4.41295 4.42394 4.58425 4.63662 4.71731 4.73517 4.81007 4.81513 4.83420 4.88701 4.95317 5.02789 5.07242 5.12588 5.15592 5.23051 5.27515 5.36926 5.41036 5.48424 5.51727 5.59768 5.73443 6.15616 6.29233 6.32833 6.69293 7.28604 8.89157 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.004149 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.619121 B = 6747.001851 C = 7293.683526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.087 0.913 5 N -1.108 6.108 6 S 2.793 3.207 7 O -1.019 7.019 8 O -1.001 7.001 9 N -0.995 5.995 10 C 0.086 3.914 11 C 0.242 3.758 12 C -0.543 4.543 13 H 0.025 0.975 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.224 1.224 20 C -0.125 4.125 21 H 0.088 0.912 22 C -0.122 4.122 23 C -0.154 4.154 24 C 0.058 3.942 25 O -0.396 6.396 26 C 0.065 3.935 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.422 0.578 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.372 -14.594 -10.245 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.105 0.895 5 N -0.870 5.870 6 S 2.801 3.199 7 O -1.003 7.003 8 O -0.984 6.984 9 N -0.836 5.836 10 C -0.059 4.059 11 C 0.117 3.883 12 C -0.582 4.582 13 H 0.044 0.956 14 C -0.193 4.193 15 N -0.591 5.591 16 Si 0.764 3.236 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.147 1.147 20 C -0.145 4.145 21 H 0.107 0.893 22 C -0.160 4.160 23 C -0.192 4.192 24 C -0.019 4.019 25 O -0.315 6.315 26 C -0.012 4.012 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.585 -13.756 -10.061 25.216 hybrid contribution -1.036 0.257 1.100 1.533 sum 17.549 -13.498 -8.961 23.885 Atomic orbital electron populations 1.21917 0.95961 1.02229 1.02008 1.21957 0.95916 0.94254 1.04381 1.20968 0.93564 0.94988 0.85366 0.89511 1.55827 1.72198 1.43896 1.15127 1.01380 0.72660 0.73935 0.71974 1.93579 1.84887 1.82390 1.39437 1.93521 1.71851 1.65972 1.67032 1.57255 1.25932 1.83804 1.16607 1.21651 1.03724 1.02238 0.78306 1.19128 0.84494 0.94044 0.90604 1.21763 1.08438 0.94652 1.33395 0.95623 1.25964 0.95994 1.01886 0.95419 1.70082 1.16431 1.32903 1.39641 0.85801 0.77834 0.79740 0.80196 1.19598 1.20592 1.14668 1.22141 0.94819 0.96718 1.00849 0.89325 1.21651 0.95891 0.96396 1.02066 1.22192 0.95739 1.01631 0.99606 1.22694 0.99922 0.82979 0.96276 1.87908 1.21341 1.27768 1.94486 1.22806 0.80695 1.02449 0.95294 0.92271 0.91516 0.94079 0.88210 0.90302 0.74290 0.89898 0.91383 0.91118 0.92490 0.95189 0.92427 0.91980 0.93512 0.90469 0.91159 0.92716 0.87507 0.86419 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.76 71.98 0.70 -2.28 16 2 C -0.13 -1.78 5.35 30.59 0.16 -1.62 16 3 C 0.16 2.97 1.90 44.99 0.09 3.06 16 4 H 0.09 1.67 7.34 -2.39 -0.02 1.65 16 5 N -1.11 -27.58 4.13 -169.39 -0.70 -28.28 16 6 S 2.79 103.25 5.94 -56.49 -0.34 102.92 16 7 O -1.02 -48.71 17.23 -128.00 -2.21 -50.91 16 8 O -1.00 -38.25 14.69 -128.00 -1.88 -40.13 16 9 N -0.99 -37.35 3.23 -543.22 -1.75 -39.10 16 10 C 0.09 2.60 10.39 127.77 1.33 3.93 16 11 C 0.24 10.72 3.40 85.63 0.29 11.01 16 12 C -0.54 -31.39 9.94 25.60 0.25 -31.13 16 13 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 14 C 0.00 0.28 5.47 84.66 0.46 0.75 16 15 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 16 Si 0.94 42.26 27.47 68.60 1.88 44.14 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.22 -8.55 6.54 99.48 0.65 -7.89 16 20 C -0.12 -2.19 2.16 -10.70 -0.02 -2.21 16 21 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 22 C -0.12 -2.70 4.18 30.71 0.13 -2.57 16 23 C -0.15 -2.75 6.14 30.69 0.19 -2.56 16 24 C 0.06 0.91 6.84 72.01 0.49 1.40 16 25 O -0.40 -7.22 10.77 -148.98 -1.60 -8.83 16 26 C 0.06 0.96 5.71 72.01 0.41 1.37 16 27 H 0.06 1.06 6.76 -2.39 -0.02 1.05 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.94 6.97 -2.39 -0.02 0.92 16 30 H 0.10 0.93 6.36 -2.39 -0.02 0.91 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.42 9.10 8.96 -96.74 -0.87 8.23 16 33 H 0.08 1.79 6.61 -2.39 -0.02 1.77 16 34 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 35 H 0.07 2.11 6.99 -2.39 -0.02 2.09 16 36 H 0.06 2.27 7.17 -2.38 -0.02 2.26 16 37 H 0.03 1.32 7.13 -2.38 -0.02 1.30 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.06 1.52 7.83 -2.39 -0.02 1.50 16 40 H 0.05 1.21 7.34 -2.39 -0.02 1.20 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.12 1.24 6.52 -2.39 -0.02 1.22 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.37 364.96 -1.76 -80.14 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.05 Total: 20.97 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.49 Total: -20.87 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -2.15 Total: -127.43 kcal Atomic # 8 Polarization: -94.18 SS G_CDS: -5.69 Total: -99.87 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 16 Polarization: 103.25 SS G_CDS: -0.34 Total: 102.92 kcal Total: -78.37 -1.76 -80.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882757668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.025 kcal (2) G-P(sol) polarization free energy of solvation -78.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds