Wall clock time and date at job start Tue Mar 31 2020 04:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35282 * 117.00256 * 2 1 4 4 N 1.32768 * 120.61423 * 359.97438 * 3 2 1 5 5 C 1.31726 * 120.86955 * 180.02562 * 4 3 2 6 6 C 1.50698 * 118.89873 * 179.97438 * 5 4 3 7 7 N 1.31936 * 122.20187 * 0.02562 * 5 4 3 8 8 C 1.32194 * 121.13677 * 359.68671 * 7 5 4 9 9 C 1.39812 * 118.97748 * 0.56388 * 8 7 5 10 10 C 1.47531 * 120.97657 * 179.74628 * 9 8 7 11 11 O 1.21590 * 119.99913 * 179.72181 * 10 9 8 12 12 N 1.34777 * 120.00445 * 359.44073 * 10 9 8 13 13 C 1.46499 * 120.00245 * 180.27488 * 12 10 9 14 14 H 1.09004 * 109.46920 * 325.00423 * 13 12 10 15 15 C 1.52995 * 109.46967 * 85.00362 * 13 12 10 16 16 C 1.53001 * 109.47056 * 205.00536 * 13 12 10 17 17 C 1.53945 * 113.74103 * 162.19974 * 16 13 12 18 18 N 1.47813 * 86.03478 * 222.08220 * 17 16 13 19 19 C 1.36935 * 134.45426 * 204.64279 * 18 17 16 20 20 H 1.07994 * 120.00023 * 182.58544 * 19 18 17 21 21 C 1.38809 * 120.00061 * 2.58700 * 19 18 17 22 22 N 1.31614 * 120.00066 * 353.41149 * 21 19 18 23 23 Si 1.86805 * 119.99982 * 173.41520 * 21 19 18 24 24 H 1.48504 * 109.47073 * 94.97037 * 23 21 19 25 25 H 1.48503 * 109.47086 * 214.96957 * 23 21 19 26 26 H 1.48495 * 109.47182 * 334.97171 * 23 21 19 27 27 C 1.47577 * 91.05116 * 24.54790 * 18 17 16 28 28 H 1.09003 * 109.46994 * 300.00480 * 1 2 3 29 29 H 1.09000 * 109.46961 * 59.99346 * 1 2 3 30 30 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47590 * 89.99275 * 6 5 4 32 32 H 1.09002 * 109.47376 * 209.99494 * 6 5 4 33 33 H 1.09005 * 109.47267 * 329.99708 * 6 5 4 34 34 H 1.07995 * 120.51269 * 180.29327 * 8 7 5 35 35 H 0.97003 * 119.99646 * 0.28204 * 12 10 9 36 36 H 1.09005 * 109.47285 * 64.48815 * 15 13 12 37 37 H 1.09000 * 109.47363 * 184.48313 * 15 13 12 38 38 H 1.09005 * 109.47323 * 304.49048 * 15 13 12 39 39 H 1.09005 * 112.94340 * 293.79018 * 16 13 12 40 40 H 1.08997 * 113.76690 * 336.34761 * 17 16 13 41 41 H 1.09003 * 113.76988 * 107.74403 * 17 16 13 42 42 H 0.97005 * 120.00312 * 179.97438 * 22 21 19 43 43 H 1.09004 * 113.76922 * 221.14823 * 27 18 17 44 44 H 1.09004 * 113.86822 * 89.76504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3265 -0.0005 5 6 1.9249 3.5029 -0.0010 6 6 1.0745 4.7470 -0.0022 7 7 3.2383 3.6283 -0.0015 8 6 4.0263 2.5669 0.0046 9 6 3.4481 1.2940 -0.0003 10 6 4.2857 0.0795 0.0006 11 8 3.7641 -1.0188 0.0014 12 7 5.6292 0.1873 -0.0052 13 6 6.4609 -1.0187 -0.0103 14 1 5.9767 -1.7965 0.5802 15 6 6.6406 -1.5080 -1.4487 16 6 7.8293 -0.6971 0.5938 17 6 8.6191 -1.9419 1.0371 18 7 8.9790 -1.1594 2.2384 19 6 10.0151 -1.1975 3.1329 20 1 10.0269 -0.5210 3.9746 21 6 11.0502 -2.1056 2.9577 22 7 10.9740 -3.0154 2.0097 23 14 12.5512 -2.0365 4.0675 24 1 12.3786 -2.9893 5.1935 25 1 13.7604 -2.4049 3.2882 26 1 12.7078 -0.6604 4.6032 27 6 7.7752 -0.3195 2.0852 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.8689 5.0476 1.0252 32 1 1.6045 5.5489 -0.5162 33 1 0.1350 4.5444 -0.5163 34 1 5.1002 2.6813 0.0089 35 1 6.0454 1.0635 -0.0058 36 1 7.1955 -0.7631 -2.0193 37 1 7.1918 -2.4484 -1.4465 38 1 5.6627 -1.6610 -1.9054 39 1 8.4095 -0.0027 -0.0139 40 1 7.9918 -2.8079 1.2485 41 1 9.4672 -2.1763 0.3937 42 1 11.6975 -3.6498 1.8870 43 1 7.9507 0.7390 2.2771 44 1 6.8985 -0.7063 2.6048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969810532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:59 Heat of formation + Delta-G solvation = 33.058889 kcal Electronic energy + Delta-G solvation = -26741.132989 eV Core-core repulsion = 22889.369077 eV Total energy + Delta-G solvation = -3851.763912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70756 -39.57892 -38.86078 -37.94744 -34.82159 -33.99267 -33.04578 -32.12195 -30.63376 -29.14776 -27.66592 -27.45820 -24.87398 -24.31820 -24.14346 -23.52270 -21.58012 -20.46564 -19.34873 -18.83861 -18.14486 -17.44126 -16.73803 -16.64853 -15.82459 -15.27782 -15.04548 -14.83252 -14.79595 -14.66200 -14.38592 -13.98256 -13.72034 -13.37019 -13.19731 -12.89568 -12.83347 -12.37720 -12.28554 -12.05345 -11.93624 -11.68386 -11.57090 -11.37306 -11.24095 -10.90198 -10.66004 -10.61102 -10.36370 -10.09642 -9.81363 -9.78920 -9.63407 -9.42872 -9.36580 -8.84656 -8.72390 -6.87410 -5.76567 -3.07355 0.18326 0.79306 2.55241 2.79540 3.11902 3.39690 3.44786 3.46966 3.47970 3.53404 3.66220 4.36544 4.46126 4.50779 4.80994 4.87102 4.95270 4.98154 5.12622 5.12970 5.16528 5.20839 5.30386 5.41098 5.46225 5.55052 5.65439 5.83099 5.83398 6.00387 6.08373 6.28099 6.36823 6.42880 6.46050 6.58392 6.63811 6.77638 6.82861 7.22990 7.38121 7.55204 7.57478 7.66579 7.99031 8.28691 9.05569 9.72053 10.61366 11.41143 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.002629 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.655881 B =10648.312616 C =11266.521199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.262 6.262 3 C 0.413 3.587 4 N -0.580 5.580 5 C 0.373 3.627 6 C -0.089 4.089 7 N -0.544 5.544 8 C 0.215 3.785 9 C -0.266 4.266 10 C 0.568 3.432 11 O -0.518 6.518 12 N -0.715 5.715 13 C 0.153 3.847 14 H 0.089 0.911 15 C -0.158 4.158 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.125 3.875 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.395 0.605 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.041 0.959 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.543 13.242 -8.197 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.162 6.162 3 C 0.225 3.775 4 N -0.312 5.312 5 C 0.107 3.893 6 C -0.147 4.147 7 N -0.263 5.263 8 C 0.050 3.950 9 C -0.275 4.275 10 C 0.353 3.647 11 O -0.394 6.394 12 N -0.366 5.366 13 C 0.048 3.952 14 H 0.107 0.893 15 C -0.216 4.216 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.197 0.803 35 H 0.229 0.771 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.092 12.745 -8.060 25.928 hybrid contribution 1.268 -0.380 0.736 1.515 sum -19.824 12.364 -7.323 24.485 Atomic orbital electron populations 1.23068 0.76894 1.03844 1.02556 1.86548 1.22860 1.22427 1.84380 1.20125 0.88367 0.85201 0.83766 1.68067 1.41138 0.98537 1.23410 1.23194 0.88253 0.92187 0.85693 1.20670 0.98334 0.91333 1.04352 1.68308 1.05395 1.33572 1.19014 1.23430 1.00782 0.85658 0.85156 1.21019 0.92431 0.97116 1.16899 1.17501 0.82218 0.87722 0.77309 1.90835 1.72841 1.26876 1.48818 1.46009 1.05164 1.10499 1.74914 1.21142 0.90648 0.86454 0.96916 0.89262 1.22111 1.01552 1.01856 0.96066 1.23856 0.93752 1.02669 0.96439 1.22231 0.94741 0.90212 0.87796 1.46039 1.20888 1.36022 1.30881 1.19025 0.96139 1.16080 1.03855 0.90325 1.24776 0.98799 0.97704 0.99140 1.69821 1.32837 1.19630 1.34498 0.86126 0.82684 0.77556 0.79546 1.21707 1.21580 1.20589 1.22538 0.90380 0.95283 0.91932 0.91902 0.91943 0.87854 0.89012 0.88985 0.89407 0.80339 0.77071 0.92689 0.91055 0.92803 0.89231 0.95354 0.90821 0.93638 0.94093 0.95033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.41 101.05 1.05 1.33 16 2 O -0.26 -3.50 8.73 -38.68 -0.34 -3.84 16 3 C 0.41 5.36 7.54 -16.19 -0.12 5.24 16 4 N -0.58 -6.53 9.26 -10.47 -0.10 -6.63 16 5 C 0.37 3.71 7.64 -157.13 -1.20 2.51 16 6 C -0.09 -0.52 10.31 36.00 0.37 -0.15 16 7 N -0.54 -5.70 10.31 -10.44 -0.11 -5.81 16 8 C 0.21 2.17 10.81 -16.81 -0.18 1.99 16 9 C -0.27 -3.33 5.92 -104.56 -0.62 -3.95 16 10 C 0.57 8.27 7.74 -12.47 -0.10 8.17 16 11 O -0.52 -9.43 14.98 -15.86 -0.24 -9.66 16 12 N -0.71 -9.19 4.91 -54.85 -0.27 -9.45 16 13 C 0.15 2.32 2.28 -67.93 -0.16 2.17 16 14 H 0.09 1.58 7.49 -51.93 -0.39 1.19 16 15 C -0.16 -2.19 9.43 37.15 0.35 -1.84 16 16 C -0.15 -2.57 3.35 -89.70 -0.30 -2.88 16 17 C 0.18 4.05 7.03 -2.84 -0.02 4.03 16 18 N -0.61 -15.66 3.70 -177.72 -0.66 -16.32 16 19 C -0.22 -6.30 10.69 -15.06 -0.16 -6.46 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.73 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.33 11.43 55.49 0.63 -26.70 16 23 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.12 2.49 8.38 -2.97 -0.02 2.47 16 28 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.18 1.24 6.53 -52.49 -0.34 0.89 16 35 H 0.39 3.94 6.73 -40.82 -0.27 3.67 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 41 H 0.07 1.86 7.20 -51.93 -0.37 1.48 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -35.32 370.97 -8.12 -43.44 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.41 Total: -0.10 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -1.20 Total: 12.30 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.50 Total: -64.91 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.58 Total: -13.50 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.32 -8.12 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969810532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.500 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds