Wall clock time and date at job start Tue Mar 31 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35282 * 117.00256 * 2 1 4 4 N 1.32768 * 120.61423 * 359.97438 * 3 2 1 5 5 C 1.31726 * 120.86955 * 180.02562 * 4 3 2 6 6 C 1.50698 * 118.89873 * 179.97438 * 5 4 3 7 7 N 1.31936 * 122.20187 * 0.02562 * 5 4 3 8 8 C 1.32194 * 121.13677 * 359.68671 * 7 5 4 9 9 C 1.39812 * 118.97748 * 0.56388 * 8 7 5 10 10 C 1.47531 * 120.97657 * 179.74628 * 9 8 7 11 11 O 1.21590 * 119.99913 * 179.72181 * 10 9 8 12 12 N 1.34777 * 120.00445 * 359.44073 * 10 9 8 13 13 C 1.46499 * 120.00245 * 180.27488 * 12 10 9 14 14 H 1.09004 * 109.46920 * 325.00423 * 13 12 10 15 15 C 1.52995 * 109.46967 * 85.00362 * 13 12 10 16 16 C 1.53001 * 109.47056 * 205.00536 * 13 12 10 17 17 C 1.53945 * 113.74103 * 162.19974 * 16 13 12 18 18 N 1.47813 * 86.03478 * 222.08220 * 17 16 13 19 19 C 1.36935 * 134.45426 * 204.64279 * 18 17 16 20 20 H 1.07994 * 120.00023 * 182.58544 * 19 18 17 21 21 C 1.38809 * 120.00061 * 2.58700 * 19 18 17 22 22 N 1.31614 * 120.00066 * 353.41149 * 21 19 18 23 23 Si 1.86805 * 119.99982 * 173.41520 * 21 19 18 24 24 H 1.48504 * 109.47073 * 94.97037 * 23 21 19 25 25 H 1.48503 * 109.47086 * 214.96957 * 23 21 19 26 26 H 1.48495 * 109.47182 * 334.97171 * 23 21 19 27 27 C 1.47577 * 91.05116 * 24.54790 * 18 17 16 28 28 H 1.09003 * 109.46994 * 300.00480 * 1 2 3 29 29 H 1.09000 * 109.46961 * 59.99346 * 1 2 3 30 30 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47590 * 89.99275 * 6 5 4 32 32 H 1.09002 * 109.47376 * 209.99494 * 6 5 4 33 33 H 1.09005 * 109.47267 * 329.99708 * 6 5 4 34 34 H 1.07995 * 120.51269 * 180.29327 * 8 7 5 35 35 H 0.97003 * 119.99646 * 0.28204 * 12 10 9 36 36 H 1.09005 * 109.47285 * 64.48815 * 15 13 12 37 37 H 1.09000 * 109.47363 * 184.48313 * 15 13 12 38 38 H 1.09005 * 109.47323 * 304.49048 * 15 13 12 39 39 H 1.09005 * 112.94340 * 293.79018 * 16 13 12 40 40 H 1.08997 * 113.76690 * 336.34761 * 17 16 13 41 41 H 1.09003 * 113.76988 * 107.74403 * 17 16 13 42 42 H 0.97005 * 120.00312 * 179.97438 * 22 21 19 43 43 H 1.09004 * 113.76922 * 221.14823 * 27 18 17 44 44 H 1.09004 * 113.86822 * 89.76504 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3265 -0.0005 5 6 1.9249 3.5029 -0.0010 6 6 1.0745 4.7470 -0.0022 7 7 3.2383 3.6283 -0.0015 8 6 4.0263 2.5669 0.0046 9 6 3.4481 1.2940 -0.0003 10 6 4.2857 0.0795 0.0006 11 8 3.7641 -1.0188 0.0014 12 7 5.6292 0.1873 -0.0052 13 6 6.4609 -1.0187 -0.0103 14 1 5.9767 -1.7965 0.5802 15 6 6.6406 -1.5080 -1.4487 16 6 7.8293 -0.6971 0.5938 17 6 8.6191 -1.9419 1.0371 18 7 8.9790 -1.1594 2.2384 19 6 10.0151 -1.1975 3.1329 20 1 10.0269 -0.5210 3.9746 21 6 11.0502 -2.1056 2.9577 22 7 10.9740 -3.0154 2.0097 23 14 12.5512 -2.0365 4.0675 24 1 12.3786 -2.9893 5.1935 25 1 13.7604 -2.4049 3.2882 26 1 12.7078 -0.6604 4.6032 27 6 7.7752 -0.3195 2.0852 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.8689 5.0476 1.0252 32 1 1.6045 5.5489 -0.5162 33 1 0.1350 4.5444 -0.5163 34 1 5.1002 2.6813 0.0089 35 1 6.0454 1.0635 -0.0058 36 1 7.1955 -0.7631 -2.0193 37 1 7.1918 -2.4484 -1.4465 38 1 5.6627 -1.6610 -1.9054 39 1 8.4095 -0.0027 -0.0139 40 1 7.9918 -2.8079 1.2485 41 1 9.4672 -2.1763 0.3937 42 1 11.6975 -3.6498 1.8870 43 1 7.9507 0.7390 2.2771 44 1 6.8985 -0.7063 2.6048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969810532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:58 Heat of formation + Delta-G solvation = 7.779921 kcal Electronic energy + Delta-G solvation = -26742.229167 eV Core-core repulsion = 22889.369077 eV Total energy + Delta-G solvation = -3852.860090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55210 -40.83102 -39.72166 -39.48751 -36.19165 -34.86851 -34.10700 -33.81824 -31.84802 -29.91931 -29.30063 -28.41097 -26.55557 -25.75388 -25.06415 -24.58726 -22.97542 -21.64466 -20.90078 -19.70523 -19.06379 -18.72731 -18.48974 -17.50461 -17.11563 -16.77765 -16.11178 -15.94314 -15.80703 -15.70623 -15.54850 -15.52248 -15.02550 -14.70183 -14.24733 -14.05656 -13.54681 -13.34299 -13.26451 -13.20549 -13.07215 -13.04894 -12.96704 -12.66424 -12.66207 -12.54504 -12.34033 -12.03013 -11.78622 -11.57280 -11.42656 -11.22799 -10.89839 -10.80758 -10.59834 -10.31196 -9.97860 -8.91743 -7.90462 -5.22572 -0.65286 -0.04124 1.46323 1.47671 1.57246 1.75907 1.78762 2.02360 2.48258 2.64095 2.77073 2.92662 3.31021 3.39547 3.49711 3.63594 3.75371 3.97628 4.04307 4.17387 4.29493 4.32406 4.32608 4.47596 4.60436 4.62959 4.72411 4.73887 4.79660 4.85095 4.88647 4.91192 4.98486 5.10977 5.26627 5.27007 5.32988 5.50695 5.56540 5.62060 5.67508 5.94897 5.97850 6.53487 6.85989 6.93020 7.21516 7.61897 8.57860 9.27115 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.002629 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.655881 B =10648.312616 C =11266.521199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.290 6.290 3 C 0.399 3.601 4 N -0.584 5.584 5 C 0.369 3.631 6 C -0.087 4.087 7 N -0.551 5.551 8 C 0.229 3.771 9 C -0.288 4.288 10 C 0.571 3.429 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.165 3.835 14 H 0.061 0.939 15 C -0.151 4.151 16 C -0.107 4.107 17 C 0.170 3.830 18 N -0.644 5.644 19 C -0.236 4.236 20 H 0.083 0.917 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.126 3.874 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.211 0.789 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.010 0.990 41 H 0.046 0.954 42 H 0.249 0.751 43 H 0.066 0.934 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.014 16.122 -8.378 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.191 6.191 3 C 0.212 3.788 4 N -0.316 5.316 5 C 0.104 3.896 6 C -0.145 4.145 7 N -0.270 5.270 8 C 0.063 3.937 9 C -0.297 4.297 10 C 0.358 3.642 11 O -0.441 6.441 12 N -0.353 5.353 13 C 0.060 3.940 14 H 0.079 0.921 15 C -0.209 4.209 16 C -0.127 4.127 17 C 0.044 3.956 18 N -0.370 5.370 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.190 1.190 27 C 0.001 3.999 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.227 0.773 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -21.596 15.693 -8.240 27.938 hybrid contribution 1.292 -1.221 0.815 1.956 sum -20.303 14.472 -7.424 26.015 Atomic orbital electron populations 1.23282 0.75084 1.05123 1.03172 1.86514 1.24912 1.23253 1.84389 1.20390 0.88859 0.85601 0.83985 1.68168 1.40981 0.98497 1.23964 1.24053 0.88740 0.92939 0.83895 1.20848 0.98277 0.89764 1.05566 1.68450 1.05695 1.33349 1.19480 1.23905 1.02157 0.84511 0.83087 1.20903 0.92182 0.97053 1.19521 1.17755 0.82425 0.87833 0.76226 1.90814 1.73633 1.28686 1.50923 1.45731 1.04614 1.10525 1.74409 1.20773 0.89267 0.86755 0.97243 0.92060 1.22044 1.01634 1.02152 0.95120 1.23454 0.94247 0.99421 0.95573 1.22143 0.94352 0.91800 0.87293 1.46487 1.22082 1.37432 1.31017 1.19439 0.97057 1.15699 1.04250 0.89926 1.25629 1.01726 0.97733 1.00952 1.70009 1.33438 1.20443 1.36342 0.85075 0.78828 0.78000 0.77498 1.21810 1.21850 1.19013 1.22695 0.88157 0.95776 0.93267 0.91381 0.91126 0.86347 0.87540 0.87638 0.88286 0.77260 0.74986 0.90476 0.91833 0.93063 0.87079 0.97238 0.93533 0.94230 0.91610 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.41 113.37 1.18 1.66 16 2 O -0.29 -7.81 8.73 -65.46 -0.57 -8.38 16 3 C 0.40 10.14 7.54 85.17 0.64 10.78 16 4 N -0.58 -12.38 9.26 -299.85 -2.78 -15.16 16 5 C 0.37 6.52 7.64 138.73 1.06 7.58 16 6 C -0.09 -0.76 10.31 71.24 0.73 -0.03 16 7 N -0.55 -10.09 10.31 -186.93 -1.93 -12.02 16 8 C 0.23 4.05 10.81 85.02 0.92 4.96 16 9 C -0.29 -6.89 5.92 -19.83 -0.12 -7.01 16 10 C 0.57 16.26 7.74 86.69 0.67 16.93 16 11 O -0.56 -20.81 14.98 16.22 0.24 -20.57 16 12 N -0.70 -16.77 4.91 -445.71 -2.19 -18.96 16 13 C 0.16 4.88 2.28 44.99 0.10 4.99 16 14 H 0.06 2.22 7.49 -2.38 -0.02 2.20 16 15 C -0.15 -4.05 9.43 71.98 0.68 -3.37 16 16 C -0.11 -3.62 3.35 -10.14 -0.03 -3.65 16 17 C 0.17 7.98 7.03 86.44 0.61 8.59 16 18 N -0.64 -32.97 3.70 -716.17 -2.65 -35.63 16 19 C -0.24 -13.33 10.69 84.03 0.90 -12.43 16 20 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 22 N -0.95 -57.94 11.43 21.65 0.25 -57.70 16 23 Si 0.98 45.90 29.56 68.60 2.03 47.93 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.13 4.86 8.38 86.48 0.72 5.58 16 28 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.21 2.11 6.53 -2.91 -0.02 2.09 16 35 H 0.41 6.90 6.73 -92.71 -0.62 6.28 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.01 0.49 8.04 -2.39 -0.02 0.47 16 41 H 0.05 2.42 7.20 -2.39 -0.02 2.41 16 42 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -78.50 370.97 1.33 -77.16 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.40 Total: 12.14 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 8.53 Total: 31.18 kcal Atomic # 7 Polarization: -130.17 SS G_CDS: -9.30 Total: -139.46 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.33 Total: -28.95 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.50 1.33 -77.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969810532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.944 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds