Wall clock time and date at job start Tue Mar 31 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35283 * 117.00286 * 2 1 4 4 N 1.32774 * 120.61235 * 0.24125 * 3 2 1 5 5 C 1.31722 * 120.87144 * 180.28511 * 4 3 2 6 6 C 1.50695 * 118.90251 * 179.74843 * 5 4 3 7 7 N 1.31945 * 122.19320 * 359.73108 * 5 4 3 8 8 C 1.32185 * 121.14353 * 359.97438 * 7 5 4 9 9 C 1.39807 * 118.97901 * 359.97438 * 8 7 5 10 10 C 1.47534 * 120.97857 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99848 * 170.09548 * 10 9 8 12 12 N 1.34778 * 119.99899 * 350.08993 * 10 9 8 13 13 C 1.47424 * 125.64936 * 353.31750 * 12 10 9 14 14 C 1.54912 * 104.92788 * 204.15214 * 13 12 10 15 15 H 1.09007 * 110.99801 * 81.01518 * 14 13 12 16 16 N 1.46494 * 111.00504 * 204.86004 * 14 13 12 17 17 C 1.36938 * 120.00659 * 273.55118 * 16 14 13 18 18 H 1.08007 * 119.99309 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00566 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99646 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46991 * 89.99990 * 21 19 17 23 23 H 1.48504 * 109.47227 * 209.99845 * 21 19 17 24 24 H 1.48502 * 109.47303 * 330.00029 * 21 19 17 25 25 C 1.55151 * 101.58171 * 322.93927 * 14 13 12 26 26 C 1.47295 * 125.79212 * 173.32062 * 12 10 9 27 27 H 1.09001 * 109.87157 * 298.35874 * 26 12 10 28 28 C 1.53001 * 109.98280 * 59.42685 * 26 12 10 29 29 H 1.09007 * 109.47176 * 299.99946 * 1 2 3 30 30 H 1.09000 * 109.47585 * 59.99631 * 1 2 3 31 31 H 1.08999 * 109.47822 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47448 * 269.97602 * 6 5 4 33 33 H 1.08991 * 109.47127 * 29.98014 * 6 5 4 34 34 H 1.09004 * 109.47085 * 149.98443 * 6 5 4 35 35 H 1.07995 * 120.50786 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.36459 * 85.26445 * 13 12 10 37 37 H 1.09000 * 110.37065 * 323.05116 * 13 12 10 38 38 H 0.97006 * 120.00052 * 93.55111 * 16 14 13 39 39 H 0.97000 * 119.99951 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.71848 * 153.86237 * 25 14 13 41 41 H 1.08998 * 110.72081 * 277.13637 * 25 14 13 42 42 H 1.09009 * 109.46674 * 177.91339 * 28 26 12 43 43 H 1.08998 * 109.47311 * 297.91178 * 28 26 12 44 44 H 1.08999 * 109.46910 * 57.91831 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3320 2.3266 0.0048 5 6 1.9247 3.5029 -0.0008 6 6 1.0743 4.7470 -0.0008 7 7 3.2382 3.6282 -0.0061 8 6 4.0262 2.5669 -0.0055 9 6 3.4481 1.2940 0.0014 10 6 4.2857 0.0795 0.0018 11 8 3.7778 -1.0092 0.1889 12 7 5.6139 0.1769 -0.2054 13 6 6.3372 1.4056 -0.5806 14 6 7.6260 0.9110 -1.2835 15 1 7.4277 0.6470 -2.3223 16 7 8.6911 1.9128 -1.1927 17 6 8.7757 2.9091 -2.1284 18 1 8.0574 2.9560 -2.9336 19 6 9.7846 3.8586 -2.0420 20 7 9.8661 4.8158 -2.9417 21 14 11.0264 3.7777 -0.6489 22 1 12.1845 2.9469 -1.0658 23 1 11.4932 5.1490 -0.3217 24 1 10.3888 3.1730 0.5482 25 6 7.9739 -0.3481 -0.4463 26 6 6.5860 -0.9242 -0.0954 27 1 6.5924 -1.3124 0.9231 28 6 6.2233 -2.0416 -1.0756 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 0.8655 5.0444 -1.0284 33 1 0.1366 4.5460 0.5171 34 1 1.6060 5.5505 0.5090 35 1 5.1001 2.6814 -0.0095 36 1 6.5881 1.9844 0.3082 37 1 5.7374 2.0047 -1.2657 38 1 9.3364 1.8704 -0.4697 39 1 10.5709 5.4796 -2.8811 40 1 8.5478 -1.0595 -1.0401 41 1 8.5167 -0.0722 0.4578 42 1 6.9682 -2.8351 -1.0137 43 1 5.2425 -2.4435 -0.8218 44 1 6.2012 -1.6424 -2.0896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988938213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:45 Heat of formation + Delta-G solvation = 17.892697 kcal Electronic energy + Delta-G solvation = -27621.914417 eV Core-core repulsion = 23769.492850 eV Total energy + Delta-G solvation = -3852.421567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58336 -39.85422 -38.73063 -37.42087 -34.38886 -34.03050 -32.88845 -31.67408 -31.43201 -29.11248 -28.85660 -27.55271 -25.99389 -24.27721 -23.82964 -23.27790 -21.83870 -20.59861 -19.42652 -18.60916 -17.99538 -17.63231 -16.98295 -16.53457 -15.73340 -15.56920 -15.09593 -14.83415 -14.65466 -14.50288 -14.07720 -13.82692 -13.56687 -13.39998 -13.01628 -12.79205 -12.78050 -12.63563 -12.61968 -12.23594 -11.97211 -11.92865 -11.77828 -11.65933 -11.42925 -11.09115 -10.84280 -10.69604 -10.42559 -10.39136 -10.10716 -9.75325 -9.69010 -9.47431 -9.18445 -9.08609 -8.48447 -7.45601 -5.88708 -3.27944 0.39032 1.01665 2.66370 2.88964 3.00651 3.29695 3.32576 3.39418 3.66777 3.68119 3.93132 4.42004 4.48467 4.66321 4.78716 4.92258 5.01095 5.05121 5.06192 5.08895 5.13199 5.24630 5.32383 5.34173 5.40607 5.45308 5.48602 5.65345 5.68685 5.75141 5.81961 5.86917 5.99719 6.06735 6.14101 6.25911 6.38859 6.50792 6.63693 6.66040 6.94982 7.62842 7.84485 7.88861 8.26779 8.29590 9.05588 9.77483 9.94749 11.28650 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004131 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.056105 B = 6776.347361 C = 8509.580389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.266 6.266 3 C 0.412 3.588 4 N -0.583 5.583 5 C 0.371 3.629 6 C -0.088 4.088 7 N -0.539 5.539 8 C 0.194 3.806 9 C -0.268 4.268 10 C 0.587 3.413 11 O -0.525 6.525 12 N -0.608 5.608 13 C 0.055 3.945 14 C 0.181 3.819 15 H 0.076 0.924 16 N -0.735 5.735 17 C -0.258 4.258 18 H 0.093 0.907 19 C 0.013 3.987 20 N -0.926 5.926 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.140 4.140 26 C 0.143 3.857 27 H 0.073 0.927 28 C -0.163 4.163 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.207 0.793 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.365 0.635 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 -7.625 7.333 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.167 6.167 3 C 0.224 3.776 4 N -0.315 5.315 5 C 0.105 3.895 6 C -0.147 4.147 7 N -0.257 5.257 8 C 0.030 3.970 9 C -0.276 4.276 10 C 0.375 3.625 11 O -0.403 6.403 12 N -0.342 5.342 13 C -0.070 4.070 14 C 0.069 3.931 15 H 0.094 0.906 16 N -0.377 5.377 17 C -0.387 4.387 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.573 5.573 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.179 4.179 26 C 0.040 3.960 27 H 0.091 0.909 28 C -0.221 4.221 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.222 0.778 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.199 0.801 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.684 -7.587 7.230 19.702 hybrid contribution 1.164 -0.438 0.922 1.548 sum -15.519 -8.024 8.152 19.279 Atomic orbital electron populations 1.23028 0.77111 1.03559 1.02571 1.86505 1.22709 1.22674 1.84826 1.20063 0.88212 0.85181 0.84176 1.68043 1.41059 0.98539 1.23830 1.23278 0.88577 0.92083 0.85574 1.20664 0.98196 0.91441 1.04356 1.68463 1.05096 1.33714 1.18468 1.24962 1.02841 0.85526 0.83691 1.20850 0.92063 0.97052 1.17684 1.17143 0.80373 0.87620 0.77387 1.90774 1.72013 1.27584 1.49879 1.48465 1.05385 1.11957 1.68388 1.23869 0.96362 0.86874 0.99905 1.21249 0.86910 0.87653 0.97290 0.90637 1.42678 1.31536 1.31385 1.32095 1.19052 1.12112 1.02741 1.04809 0.88959 1.24680 0.98578 0.97154 0.97992 1.69696 1.35021 1.16659 1.35880 0.86585 0.82249 0.77176 0.82672 1.20947 1.21599 1.20189 1.23041 0.94903 0.98824 1.01147 1.21542 0.87582 0.87399 0.99464 0.90923 1.22164 1.02743 0.97771 0.99385 0.91999 0.91981 0.88072 0.88994 0.89560 0.88914 0.77758 0.90456 0.90084 0.80127 0.92823 0.89619 0.90590 0.91935 0.91052 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.41 101.05 1.05 1.37 16 2 O -0.27 -3.90 8.78 -38.39 -0.34 -4.24 16 3 C 0.41 6.26 7.54 -16.19 -0.12 6.14 16 4 N -0.58 -8.01 9.26 -10.47 -0.10 -8.11 16 5 C 0.37 4.88 7.64 -157.13 -1.20 3.68 16 6 C -0.09 -0.77 10.31 36.00 0.37 -0.40 16 7 N -0.54 -8.00 10.31 -10.44 -0.11 -8.10 16 8 C 0.19 2.89 9.56 -16.81 -0.16 2.73 16 9 C -0.27 -4.20 5.88 -104.56 -0.62 -4.82 16 10 C 0.59 9.72 7.61 -12.47 -0.09 9.63 16 11 O -0.53 -9.75 14.11 -15.55 -0.22 -9.97 16 12 N -0.61 -9.19 3.09 -164.03 -0.51 -9.70 16 13 C 0.06 0.86 4.60 -2.53 -0.01 0.85 16 14 C 0.18 3.06 3.69 -65.79 -0.24 2.82 16 15 H 0.08 1.35 8.13 -51.93 -0.42 0.92 16 16 N -0.74 -15.46 5.08 -51.35 -0.26 -15.72 16 17 C -0.26 -6.66 10.47 -15.06 -0.16 -6.82 16 18 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 19 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 20 N -0.93 -27.66 13.97 55.49 0.78 -26.89 16 21 Si 0.88 20.68 27.73 -169.99 -4.71 15.96 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -5.98 6.52 56.52 0.37 -5.61 16 25 C -0.14 -1.92 6.12 -24.90 -0.15 -2.07 16 26 C 0.14 1.95 3.54 -66.81 -0.24 1.72 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 C -0.16 -2.11 9.04 37.16 0.34 -1.78 16 29 H 0.06 0.56 8.12 -51.92 -0.42 0.14 16 30 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.21 2.97 3.57 -52.49 -0.19 2.78 16 36 H 0.08 1.18 7.28 -51.93 -0.38 0.81 16 37 H 0.08 1.29 6.10 -51.93 -0.32 0.98 16 38 H 0.37 7.53 5.57 -40.82 -0.23 7.30 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.09 1.07 7.83 -51.93 -0.41 0.66 16 41 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 42 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 43 H 0.07 1.04 6.60 -51.93 -0.34 0.70 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -32.37 357.65 -7.50 -39.87 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.09 Total: 8.20 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -1.33 Total: 13.30 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.20 Total: -68.52 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.56 Total: -14.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.37 -7.50 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988938213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.764 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds