Wall clock time and date at job start Tue Mar 31 2020 04:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35283 * 117.00286 * 2 1 4 4 N 1.32774 * 120.61235 * 0.24125 * 3 2 1 5 5 C 1.31722 * 120.87144 * 180.28511 * 4 3 2 6 6 C 1.50695 * 118.90251 * 179.74843 * 5 4 3 7 7 N 1.31945 * 122.19320 * 359.73108 * 5 4 3 8 8 C 1.32185 * 121.14353 * 359.97438 * 7 5 4 9 9 C 1.39807 * 118.97901 * 359.97438 * 8 7 5 10 10 C 1.47534 * 120.97857 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99848 * 170.09548 * 10 9 8 12 12 N 1.34778 * 119.99899 * 350.08993 * 10 9 8 13 13 C 1.47424 * 125.64936 * 353.31750 * 12 10 9 14 14 C 1.54912 * 104.92788 * 204.15214 * 13 12 10 15 15 H 1.09007 * 110.99801 * 81.01518 * 14 13 12 16 16 N 1.46494 * 111.00504 * 204.86004 * 14 13 12 17 17 C 1.36938 * 120.00659 * 273.55118 * 16 14 13 18 18 H 1.08007 * 119.99309 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00566 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00123 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99646 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46991 * 89.99990 * 21 19 17 23 23 H 1.48504 * 109.47227 * 209.99845 * 21 19 17 24 24 H 1.48502 * 109.47303 * 330.00029 * 21 19 17 25 25 C 1.55151 * 101.58171 * 322.93927 * 14 13 12 26 26 C 1.47295 * 125.79212 * 173.32062 * 12 10 9 27 27 H 1.09001 * 109.87157 * 298.35874 * 26 12 10 28 28 C 1.53001 * 109.98280 * 59.42685 * 26 12 10 29 29 H 1.09007 * 109.47176 * 299.99946 * 1 2 3 30 30 H 1.09000 * 109.47585 * 59.99631 * 1 2 3 31 31 H 1.08999 * 109.47822 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47448 * 269.97602 * 6 5 4 33 33 H 1.08991 * 109.47127 * 29.98014 * 6 5 4 34 34 H 1.09004 * 109.47085 * 149.98443 * 6 5 4 35 35 H 1.07995 * 120.50786 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.36459 * 85.26445 * 13 12 10 37 37 H 1.09000 * 110.37065 * 323.05116 * 13 12 10 38 38 H 0.97006 * 120.00052 * 93.55111 * 16 14 13 39 39 H 0.97000 * 119.99951 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.71848 * 153.86237 * 25 14 13 41 41 H 1.08998 * 110.72081 * 277.13637 * 25 14 13 42 42 H 1.09009 * 109.46674 * 177.91339 * 28 26 12 43 43 H 1.08998 * 109.47311 * 297.91178 * 28 26 12 44 44 H 1.08999 * 109.46910 * 57.91831 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3320 2.3266 0.0048 5 6 1.9247 3.5029 -0.0008 6 6 1.0743 4.7470 -0.0008 7 7 3.2382 3.6282 -0.0061 8 6 4.0262 2.5669 -0.0055 9 6 3.4481 1.2940 0.0014 10 6 4.2857 0.0795 0.0018 11 8 3.7778 -1.0092 0.1889 12 7 5.6139 0.1769 -0.2054 13 6 6.3372 1.4056 -0.5806 14 6 7.6260 0.9110 -1.2835 15 1 7.4277 0.6470 -2.3223 16 7 8.6911 1.9128 -1.1927 17 6 8.7757 2.9091 -2.1284 18 1 8.0574 2.9560 -2.9336 19 6 9.7846 3.8586 -2.0420 20 7 9.8661 4.8158 -2.9417 21 14 11.0264 3.7777 -0.6489 22 1 12.1845 2.9469 -1.0658 23 1 11.4932 5.1490 -0.3217 24 1 10.3888 3.1730 0.5482 25 6 7.9739 -0.3481 -0.4463 26 6 6.5860 -0.9242 -0.0954 27 1 6.5924 -1.3124 0.9231 28 6 6.2233 -2.0416 -1.0756 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 0.8655 5.0444 -1.0284 33 1 0.1366 4.5460 0.5171 34 1 1.6060 5.5505 0.5090 35 1 5.1001 2.6814 -0.0095 36 1 6.5881 1.9844 0.3082 37 1 5.7374 2.0047 -1.2657 38 1 9.3364 1.8704 -0.4697 39 1 10.5709 5.4796 -2.8811 40 1 8.5478 -1.0595 -1.0401 41 1 8.5167 -0.0722 0.4578 42 1 6.9682 -2.8351 -1.0137 43 1 5.2425 -2.4435 -0.8218 44 1 6.2012 -1.6424 -2.0896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988938213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:44 Heat of formation + Delta-G solvation = -4.819595 kcal Electronic energy + Delta-G solvation = -27622.899296 eV Core-core repulsion = 23769.492850 eV Total energy + Delta-G solvation = -3853.406446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.69231 -41.07936 -39.78358 -38.75189 -36.08325 -35.13835 -33.96897 -33.47620 -32.58893 -30.46228 -29.96558 -28.46057 -27.15777 -25.77993 -24.92743 -24.64875 -23.09344 -21.99091 -20.67607 -19.76175 -19.55197 -18.97274 -18.18527 -17.60707 -17.08285 -16.85322 -16.31103 -16.14383 -15.74872 -15.62627 -15.44649 -15.33284 -14.71440 -14.64933 -14.57042 -14.20370 -13.89276 -13.57817 -13.41730 -13.31270 -13.17119 -13.07322 -13.04681 -12.82347 -12.71373 -12.56449 -12.26710 -12.00270 -11.89476 -11.78884 -11.52959 -11.40164 -11.09108 -10.84782 -10.61482 -10.31309 -9.75473 -9.32197 -7.98114 -5.34575 -0.72319 -0.11680 1.44868 1.47952 1.54731 1.60873 1.69460 1.82556 2.53308 2.54666 2.70025 2.88068 3.18704 3.31087 3.55158 3.58793 3.71754 3.81178 3.89319 4.08073 4.12687 4.26032 4.31033 4.31153 4.42211 4.45021 4.59762 4.61765 4.68079 4.68751 4.70223 4.84793 4.86122 5.02089 5.11336 5.21248 5.22217 5.31511 5.46741 5.55598 5.80990 5.92055 6.24482 6.36710 6.80222 7.00769 7.10732 7.82864 8.02887 9.22653 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004131 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.056105 B = 6776.347361 C = 8509.580389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.286 6.286 3 C 0.405 3.595 4 N -0.579 5.579 5 C 0.367 3.633 6 C -0.086 4.086 7 N -0.557 5.557 8 C 0.196 3.804 9 C -0.289 4.289 10 C 0.586 3.414 11 O -0.549 6.549 12 N -0.604 5.604 13 C 0.066 3.934 14 C 0.172 3.828 15 H 0.063 0.937 16 N -0.735 5.735 17 C -0.235 4.235 18 H 0.059 0.941 19 C -0.056 4.056 20 N -0.981 5.981 21 Si 0.951 3.049 22 H -0.280 1.280 23 H -0.302 1.302 24 H -0.244 1.244 25 C -0.125 4.125 26 C 0.140 3.860 27 H 0.085 0.915 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.206 0.794 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.372 0.628 39 H 0.257 0.743 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.052 0.948 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.226 -8.641 9.119 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.187 6.187 3 C 0.217 3.783 4 N -0.311 5.311 5 C 0.102 3.898 6 C -0.144 4.144 7 N -0.276 5.276 8 C 0.032 3.968 9 C -0.298 4.298 10 C 0.375 3.625 11 O -0.428 6.428 12 N -0.338 5.338 13 C -0.059 4.059 14 C 0.062 3.938 15 H 0.081 0.919 16 N -0.378 5.378 17 C -0.366 4.366 18 H 0.077 0.923 19 C -0.248 4.248 20 N -0.631 5.631 21 Si 0.778 3.222 22 H -0.206 1.206 23 H -0.229 1.229 24 H -0.168 1.168 25 C -0.164 4.164 26 C 0.038 3.962 27 H 0.103 0.897 28 C -0.214 4.214 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.221 0.779 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.206 0.794 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.119 -8.663 9.045 21.211 hybrid contribution 1.111 -0.164 0.297 1.161 sum -16.008 -8.827 9.342 20.529 Atomic orbital electron populations 1.23323 0.74836 1.05376 1.03192 1.86480 1.25095 1.22649 1.84506 1.20249 0.88335 0.85837 0.83907 1.68169 1.40601 0.98349 1.24010 1.24151 0.88532 0.93262 0.83859 1.20856 0.98296 0.89581 1.05637 1.68525 1.06049 1.33635 1.19425 1.24917 1.02947 0.85545 0.83425 1.20862 0.92578 0.96897 1.19422 1.17270 0.80650 0.87579 0.76986 1.90752 1.72427 1.28422 1.51245 1.48457 1.05290 1.12189 1.67852 1.23619 0.95438 0.86997 0.99845 1.21369 0.86467 0.88338 0.97612 0.91896 1.42559 1.32857 1.31091 1.31247 1.18978 1.10274 1.03108 1.04207 0.92290 1.25467 1.01232 0.97175 1.00971 1.69883 1.36330 1.18190 1.38669 0.85480 0.79569 0.76608 0.80516 1.20609 1.22905 1.16777 1.22986 0.95134 0.97055 1.01198 1.21716 0.87055 0.87120 1.00348 0.89725 1.22108 1.02589 0.98179 0.98533 0.91241 0.91409 0.85744 0.87500 0.87633 0.88017 0.77854 0.89706 0.91008 0.79388 0.93374 0.87880 0.89152 0.89277 0.92854 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.41 113.37 1.18 1.67 16 2 O -0.29 -8.26 8.78 -65.76 -0.58 -8.84 16 3 C 0.41 12.20 7.54 85.17 0.64 12.84 16 4 N -0.58 -15.36 9.26 -299.85 -2.78 -18.13 16 5 C 0.37 9.24 7.64 138.72 1.06 10.30 16 6 C -0.09 -1.32 10.31 71.23 0.73 -0.59 16 7 N -0.56 -16.29 10.31 -186.94 -1.93 -18.21 16 8 C 0.20 5.86 9.56 85.02 0.81 6.67 16 9 C -0.29 -9.07 5.88 -19.83 -0.12 -9.19 16 10 C 0.59 19.32 7.61 86.69 0.66 19.98 16 11 O -0.55 -20.34 14.11 15.95 0.23 -20.11 16 12 N -0.60 -17.75 3.09 -791.14 -2.45 -20.20 16 13 C 0.07 2.02 4.60 86.86 0.40 2.42 16 14 C 0.17 5.62 3.69 46.38 0.17 5.79 16 15 H 0.06 2.23 8.13 -2.38 -0.02 2.21 16 16 N -0.73 -29.84 5.08 -316.38 -1.61 -31.45 16 17 C -0.23 -12.23 10.47 84.03 0.88 -11.35 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 19 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 20 N -0.98 -60.20 13.97 21.65 0.30 -59.90 16 21 Si 0.95 42.17 27.73 68.60 1.90 44.08 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.24 -9.39 6.52 99.48 0.65 -8.74 16 25 C -0.13 -3.05 6.12 31.78 0.19 -2.86 16 26 C 0.14 3.52 3.54 45.29 0.16 3.68 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 C -0.16 -3.79 9.04 71.98 0.65 -3.14 16 29 H 0.07 1.17 8.12 -2.38 -0.02 1.15 16 30 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.21 5.93 3.57 -2.91 -0.01 5.92 16 36 H 0.09 2.49 7.28 -2.39 -0.02 2.47 16 37 H 0.07 2.33 6.10 -2.39 -0.01 2.31 16 38 H 0.37 14.24 5.57 -92.70 -0.52 13.72 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.10 2.20 7.83 -2.39 -0.02 2.19 16 41 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 42 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.05 1.51 6.60 -2.39 -0.02 1.49 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.24 357.65 1.45 -69.79 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.46 Total: 29.40 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: 7.89 Total: 33.59 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -8.46 Total: -147.90 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.35 Total: -28.95 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.90 Total: 44.08 kcal Total: -71.24 1.45 -69.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988938213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds