Wall clock time and date at job start Tue Mar 31 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30531 * 119.70438 * 2 1 4 4 N 1.28258 * 122.98501 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.03297 * 179.97438 * 4 3 2 6 6 C 1.34685 * 121.94076 * 359.97438 * 4 3 2 7 7 O 1.21899 * 120.47253 * 180.02562 * 6 4 3 8 8 C 1.42327 * 119.06385 * 0.28806 * 6 4 3 9 9 C 1.47411 * 121.30288 * 179.70030 * 8 6 4 10 10 O 1.21604 * 119.99850 * 173.88318 * 9 8 6 11 11 N 1.34779 * 119.99893 * 353.89011 * 9 8 6 12 12 C 1.46498 * 120.00053 * 185.06635 * 11 9 8 13 13 H 1.09003 * 110.88194 * 328.87930 * 12 11 9 14 14 C 1.55155 * 111.00447 * 204.99545 * 12 11 9 15 15 C 1.54320 * 102.94210 * 277.42859 * 14 12 11 16 16 N 1.47024 * 107.27164 * 337.80527 * 15 14 12 17 17 C 1.36936 * 125.64949 * 178.90044 * 16 15 14 18 18 H 1.07996 * 119.99880 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99968 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00003 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47065 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47105 * 120.00260 * 21 19 17 24 24 H 1.48499 * 109.47297 * 240.00302 * 21 19 17 25 25 C 1.47421 * 108.70300 * 358.94026 * 16 15 14 26 26 C 1.39324 * 117.39438 * 359.43262 * 8 6 4 27 27 C 1.50707 * 120.98628 * 180.29781 * 26 8 6 28 28 H 1.09005 * 109.47026 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46656 * 120.00321 * 1 2 3 30 30 H 1.08992 * 109.47126 * 240.00259 * 1 2 3 31 31 H 1.09004 * 109.46683 * 270.01631 * 5 4 3 32 32 H 1.08997 * 109.47063 * 30.01235 * 5 4 3 33 33 H 1.08995 * 109.47417 * 150.01737 * 5 4 3 34 34 H 0.96999 * 119.99732 * 5.05856 * 11 9 8 35 35 H 1.09004 * 110.71865 * 35.79258 * 14 12 11 36 36 H 1.08995 * 110.71973 * 159.06051 * 14 12 11 37 37 H 1.08998 * 109.88875 * 97.22522 * 15 14 12 38 38 H 1.09000 * 109.88170 * 218.39093 * 15 14 12 39 39 H 0.97002 * 119.99851 * 179.97438 * 20 19 17 40 40 H 1.08995 * 110.37096 * 265.29066 * 25 16 15 41 41 H 1.09001 * 110.36529 * 142.96378 * 25 16 15 42 42 H 1.09006 * 109.46865 * 180.28445 * 27 26 8 43 43 H 1.09000 * 109.47242 * 300.28589 * 27 26 8 44 44 H 1.09000 * 109.46978 * 60.29114 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0708 2.5267 -0.0010 6 6 4.2111 0.1069 -0.0005 7 8 5.4259 0.2078 -0.0005 8 6 3.5935 -1.1754 -0.0063 9 6 4.3960 -2.4119 -0.0131 10 8 3.8488 -3.4925 0.0943 11 7 5.7363 -2.3448 -0.1384 12 6 6.5235 -3.5746 -0.2569 13 1 6.0514 -4.3921 0.2882 14 6 7.9804 -3.3512 0.2275 15 6 8.6633 -2.7265 -1.0073 16 7 7.8676 -3.1049 -2.1843 17 6 8.1266 -2.7321 -3.4762 18 1 7.4787 -3.0637 -4.2741 19 6 9.2218 -1.9279 -3.7603 20 7 10.0117 -1.5243 -2.7879 21 14 9.5747 -1.4187 -5.5225 22 1 8.5449 -1.9995 -6.4212 23 1 9.5426 0.0624 -5.6257 24 1 10.9166 -1.9137 -5.9216 25 6 6.7443 -3.9515 -1.7431 26 6 2.2009 -1.2163 0.0007 27 6 1.4633 -2.5305 0.0020 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8899 31 1 4.2280 2.8538 -1.0289 32 1 3.4274 3.2407 0.5131 33 1 5.0306 2.4674 0.5122 34 1 6.1797 -1.4821 -0.1501 35 1 8.0048 -2.6620 1.0717 36 1 8.4495 -4.2996 0.4891 37 1 8.6864 -1.6412 -0.9089 38 1 9.6775 -3.1135 -1.1055 39 1 10.7772 -0.9626 -2.9864 40 1 7.0059 -5.0058 -1.8322 41 1 5.8508 -3.7308 -2.3272 42 1 0.3893 -2.3443 0.0027 43 1 1.7329 -3.0994 -0.8877 44 1 1.7341 -3.0982 0.8923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015470546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:57 Heat of formation + Delta-G solvation = 26.876859 kcal Electronic energy + Delta-G solvation = -27997.051736 eV Core-core repulsion = 24145.019751 eV Total energy + Delta-G solvation = -3852.031985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.28098 -39.45338 -38.22024 -37.25278 -35.83723 -33.60219 -32.44096 -31.75847 -30.67463 -29.11671 -28.25542 -27.27477 -26.43969 -24.86936 -24.07163 -22.40487 -21.01125 -19.98383 -19.79709 -18.78947 -17.56823 -16.97450 -16.83198 -16.38382 -16.01064 -15.35152 -14.68930 -14.56839 -14.23542 -14.12891 -13.94975 -13.74327 -13.47358 -13.37220 -13.26634 -12.97362 -12.77369 -12.66023 -12.29599 -12.21958 -12.14587 -11.83474 -11.73694 -11.40342 -10.89967 -10.84667 -10.62459 -10.24593 -10.06836 -10.03580 -9.98744 -9.83772 -9.60688 -9.45902 -8.67066 -8.57097 -8.34770 -6.73160 -5.64078 -2.96327 0.03650 1.39137 2.00500 2.74731 3.43229 3.46175 3.48557 3.51164 3.63265 3.75655 4.28014 4.47995 4.55896 4.57754 4.96630 5.03333 5.05408 5.19662 5.22041 5.35752 5.41705 5.45264 5.48829 5.55634 5.56576 5.59268 5.63654 5.71953 5.87193 5.88915 5.96374 6.16238 6.31544 6.49089 6.60275 6.63326 6.74004 7.16482 7.42233 7.62520 7.68359 7.88551 7.89916 8.12809 8.33185 8.66383 9.29486 9.89816 10.56289 11.47916 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.004126 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.967063 B = 6785.107926 C = 7598.849716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.051 3.949 3 N -0.208 5.208 4 N -0.343 5.343 5 C 0.080 3.920 6 C 0.492 3.508 7 O -0.511 6.511 8 C -0.222 4.222 9 C 0.572 3.428 10 O -0.550 6.550 11 N -0.686 5.686 12 C 0.124 3.876 13 H 0.091 0.909 14 C -0.153 4.153 15 C 0.176 3.824 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.127 3.873 26 C 0.036 3.964 27 C -0.116 4.116 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.418 0.582 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.250 0.750 40 H 0.029 0.971 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 5.024 9.674 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 N -0.034 5.034 4 N -0.163 5.163 5 C -0.060 4.060 6 C 0.290 3.710 7 O -0.388 6.388 8 C -0.237 4.237 9 C 0.358 3.642 10 O -0.430 6.430 11 N -0.343 5.343 12 C 0.019 3.981 13 H 0.109 0.891 14 C -0.192 4.192 15 C 0.052 3.948 16 N -0.330 5.330 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.001 4.001 26 C 0.028 3.972 27 C -0.172 4.172 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.112 5.453 9.607 22.075 hybrid contribution 0.880 0.130 -1.059 1.383 sum -18.231 5.583 8.548 20.896 Atomic orbital electron populations 1.20565 0.85890 1.04371 1.03551 1.21714 0.98059 0.86699 1.05433 1.70616 0.95245 1.28962 1.08538 1.46538 1.01891 1.10075 1.57750 1.22217 0.99342 0.79662 1.04812 1.17945 0.88227 0.84933 0.79903 1.90798 1.11972 1.84995 1.50993 1.21599 0.94309 0.94102 1.13717 1.17246 0.82658 0.86778 0.77496 1.90724 1.71689 1.28580 1.52054 1.46312 1.05672 1.12106 1.70202 1.22196 0.91337 0.86622 0.97995 0.89129 1.23207 0.94354 1.01426 1.00220 1.21167 0.93571 0.97986 0.82121 1.44468 1.27457 1.57486 1.03578 1.19087 1.08218 1.25149 0.82721 0.90595 1.24773 0.97855 1.00337 0.97541 1.69975 1.17566 1.39908 1.29446 0.86067 0.77729 0.77979 0.84145 1.20617 1.21889 1.21769 1.21937 0.91811 0.94261 0.92056 1.21615 0.92456 0.97445 0.85642 1.21054 0.98492 0.92075 1.05604 0.90018 0.89704 0.89743 0.89803 0.88714 0.87878 0.73695 0.91648 0.90936 0.93486 0.93771 0.93929 0.95355 0.94246 0.90964 0.88658 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 8.74 36.01 0.31 -0.16 16 2 C 0.05 0.51 6.87 -82.47 -0.57 -0.05 16 3 N -0.21 -2.36 10.74 33.66 0.36 -2.00 16 4 N -0.34 -4.47 3.62 -69.82 -0.25 -4.72 16 5 C 0.08 0.77 10.58 59.85 0.63 1.41 16 6 C 0.49 8.07 7.50 -14.73 -0.11 7.96 16 7 O -0.51 -9.88 13.42 5.01 0.07 -9.81 16 8 C -0.22 -3.57 5.95 -104.19 -0.62 -4.19 16 9 C 0.57 10.65 7.74 -12.52 -0.10 10.55 16 10 O -0.55 -10.40 13.42 5.27 0.07 -10.33 16 11 N -0.69 -13.81 5.11 -52.80 -0.27 -14.08 16 12 C 0.12 2.49 3.47 -65.78 -0.23 2.26 16 13 H 0.09 1.69 7.48 -51.93 -0.39 1.30 16 14 C -0.15 -3.06 6.55 -24.90 -0.16 -3.22 16 15 C 0.18 4.48 5.36 -3.06 -0.02 4.46 16 16 N -0.60 -16.24 3.39 -170.08 -0.58 -16.81 16 17 C -0.22 -6.53 10.28 -15.06 -0.15 -6.69 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 21 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.13 2.89 6.93 -2.53 -0.02 2.87 16 26 C 0.04 0.44 5.98 -103.54 -0.62 -0.18 16 27 C -0.12 -1.15 8.34 36.01 0.30 -0.85 16 28 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.08 0.37 7.90 -51.93 -0.41 -0.04 16 30 H 0.08 0.33 7.89 -51.93 -0.41 -0.08 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.05 7.36 -51.93 -0.38 0.67 16 34 H 0.42 9.04 5.41 -40.82 -0.22 8.82 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 38 H 0.04 1.22 7.51 -51.93 -0.39 0.83 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.45 6.20 -51.93 -0.32 0.12 16 43 H 0.10 1.10 7.60 -51.93 -0.39 0.70 16 44 H 0.10 1.07 7.35 -51.93 -0.38 0.69 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -35.42 355.86 -7.32 -42.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.19 Total: 5.26 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -1.44 Total: 13.81 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.17 Total: -64.96 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.14 Total: -20.14 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.42 -7.32 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015470546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds