Wall clock time and date at job start Tue Mar 31 2020 04:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30531 * 119.70438 * 2 1 4 4 N 1.28258 * 122.98501 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.03297 * 179.97438 * 4 3 2 6 6 C 1.34685 * 121.94076 * 359.97438 * 4 3 2 7 7 O 1.21899 * 120.47253 * 180.02562 * 6 4 3 8 8 C 1.42327 * 119.06385 * 0.28806 * 6 4 3 9 9 C 1.47411 * 121.30288 * 179.70030 * 8 6 4 10 10 O 1.21604 * 119.99850 * 173.88318 * 9 8 6 11 11 N 1.34779 * 119.99893 * 353.89011 * 9 8 6 12 12 C 1.46498 * 120.00053 * 185.06635 * 11 9 8 13 13 H 1.09003 * 110.88194 * 328.87930 * 12 11 9 14 14 C 1.55155 * 111.00447 * 204.99545 * 12 11 9 15 15 C 1.54320 * 102.94210 * 277.42859 * 14 12 11 16 16 N 1.47024 * 107.27164 * 337.80527 * 15 14 12 17 17 C 1.36936 * 125.64949 * 178.90044 * 16 15 14 18 18 H 1.07996 * 119.99880 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99968 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00003 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47065 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47105 * 120.00260 * 21 19 17 24 24 H 1.48499 * 109.47297 * 240.00302 * 21 19 17 25 25 C 1.47421 * 108.70300 * 358.94026 * 16 15 14 26 26 C 1.39324 * 117.39438 * 359.43262 * 8 6 4 27 27 C 1.50707 * 120.98628 * 180.29781 * 26 8 6 28 28 H 1.09005 * 109.47026 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46656 * 120.00321 * 1 2 3 30 30 H 1.08992 * 109.47126 * 240.00259 * 1 2 3 31 31 H 1.09004 * 109.46683 * 270.01631 * 5 4 3 32 32 H 1.08997 * 109.47063 * 30.01235 * 5 4 3 33 33 H 1.08995 * 109.47417 * 150.01737 * 5 4 3 34 34 H 0.96999 * 119.99732 * 5.05856 * 11 9 8 35 35 H 1.09004 * 110.71865 * 35.79258 * 14 12 11 36 36 H 1.08995 * 110.71973 * 159.06051 * 14 12 11 37 37 H 1.08998 * 109.88875 * 97.22522 * 15 14 12 38 38 H 1.09000 * 109.88170 * 218.39093 * 15 14 12 39 39 H 0.97002 * 119.99851 * 179.97438 * 20 19 17 40 40 H 1.08995 * 110.37096 * 265.29066 * 25 16 15 41 41 H 1.09001 * 110.36529 * 142.96378 * 25 16 15 42 42 H 1.09006 * 109.46865 * 180.28445 * 27 26 8 43 43 H 1.09000 * 109.47242 * 300.28589 * 27 26 8 44 44 H 1.09000 * 109.46978 * 60.29114 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0708 2.5267 -0.0010 6 6 4.2111 0.1069 -0.0005 7 8 5.4259 0.2078 -0.0005 8 6 3.5935 -1.1754 -0.0063 9 6 4.3960 -2.4119 -0.0131 10 8 3.8488 -3.4925 0.0943 11 7 5.7363 -2.3448 -0.1384 12 6 6.5235 -3.5746 -0.2569 13 1 6.0514 -4.3921 0.2882 14 6 7.9804 -3.3512 0.2275 15 6 8.6633 -2.7265 -1.0073 16 7 7.8676 -3.1049 -2.1843 17 6 8.1266 -2.7321 -3.4762 18 1 7.4787 -3.0637 -4.2741 19 6 9.2218 -1.9279 -3.7603 20 7 10.0117 -1.5243 -2.7879 21 14 9.5747 -1.4187 -5.5225 22 1 8.5449 -1.9995 -6.4212 23 1 9.5426 0.0624 -5.6257 24 1 10.9166 -1.9137 -5.9216 25 6 6.7443 -3.9515 -1.7431 26 6 2.2009 -1.2163 0.0007 27 6 1.4633 -2.5305 0.0020 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3632 -0.5139 -0.8900 30 1 -0.3633 -0.5138 0.8899 31 1 4.2280 2.8538 -1.0289 32 1 3.4274 3.2407 0.5131 33 1 5.0306 2.4674 0.5122 34 1 6.1797 -1.4821 -0.1501 35 1 8.0048 -2.6620 1.0717 36 1 8.4495 -4.2996 0.4891 37 1 8.6864 -1.6412 -0.9089 38 1 9.6775 -3.1135 -1.1055 39 1 10.7772 -0.9626 -2.9864 40 1 7.0059 -5.0058 -1.8322 41 1 5.8508 -3.7308 -2.3272 42 1 0.3893 -2.3443 0.0027 43 1 1.7329 -3.0994 -0.8877 44 1 1.7341 -3.0982 0.8923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015470546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:56 Heat of formation + Delta-G solvation = 1.240300 kcal Electronic energy + Delta-G solvation = -27998.163421 eV Core-core repulsion = 24145.019751 eV Total energy + Delta-G solvation = -3853.143670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.31857 -40.89342 -39.36122 -38.97233 -36.87467 -35.40324 -33.65804 -33.40848 -31.64222 -30.98130 -29.28052 -28.87728 -27.41664 -26.57238 -25.49478 -23.38354 -22.42742 -21.94318 -21.38413 -19.96158 -19.03916 -18.48457 -17.99243 -17.66231 -17.42927 -16.76911 -16.59527 -16.06991 -15.70973 -15.45639 -15.02712 -15.00152 -14.88264 -14.55446 -14.14635 -14.04907 -13.94651 -13.76727 -13.64767 -13.51694 -13.46092 -12.93031 -12.91102 -12.85920 -12.71163 -12.45586 -12.33736 -12.10370 -12.02869 -11.86854 -11.64055 -11.25346 -10.99059 -10.76673 -10.75429 -10.04101 -9.63399 -8.89892 -7.87752 -5.22962 -1.02234 0.37553 1.05302 1.40329 1.42290 1.52334 1.52573 2.16071 2.38598 2.45775 2.79690 3.27641 3.31071 3.48536 3.63021 3.64492 3.75926 4.03939 4.04883 4.27006 4.28211 4.31040 4.33250 4.43291 4.61768 4.64472 4.70453 4.74522 4.77741 4.83452 4.89383 4.92365 4.94546 4.96986 5.02859 5.25500 5.39035 5.43593 5.56588 5.62858 5.71191 6.15820 6.27579 6.61904 6.92878 7.07024 7.17483 7.73318 8.38485 9.22865 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.004126 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.967063 B = 6785.107926 C = 7598.849716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.057 3.943 3 N -0.206 5.206 4 N -0.342 5.342 5 C 0.074 3.926 6 C 0.481 3.519 7 O -0.558 6.558 8 C -0.271 4.271 9 C 0.570 3.430 10 O -0.559 6.559 11 N -0.700 5.700 12 C 0.135 3.865 13 H 0.113 0.887 14 C -0.136 4.136 15 C 0.187 3.813 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.125 3.875 26 C 0.064 3.936 27 C -0.116 4.116 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.410 0.590 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.007 0.993 38 H 0.014 0.986 39 H 0.247 0.753 40 H 0.043 0.957 41 H 0.026 0.974 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 5.055 9.902 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 N -0.031 5.031 4 N -0.161 5.161 5 C -0.065 4.065 6 C 0.281 3.719 7 O -0.439 6.439 8 C -0.285 4.285 9 C 0.358 3.642 10 O -0.440 6.440 11 N -0.357 5.357 12 C 0.029 3.971 13 H 0.130 0.870 14 C -0.174 4.174 15 C 0.062 3.938 16 N -0.348 5.348 17 C -0.373 4.373 18 H 0.094 0.906 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.807 3.193 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.002 4.002 26 C 0.056 3.944 27 C -0.172 4.172 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.636 5.485 9.846 25.286 hybrid contribution 1.744 0.130 -1.120 2.077 sum -20.892 5.614 8.726 23.326 Atomic orbital electron populations 1.20856 0.81857 1.06035 1.05734 1.22576 1.00230 0.85337 1.03032 1.70788 0.94108 1.29459 1.08762 1.46688 1.02394 1.10138 1.56862 1.22442 0.99617 0.78940 1.05486 1.18123 0.87936 0.86015 0.79840 1.90756 1.13734 1.85648 1.53768 1.21473 0.95803 0.93005 1.18227 1.17613 0.82236 0.87765 0.76558 1.90693 1.71659 1.29161 1.52525 1.46439 1.06521 1.11522 1.71200 1.22101 0.91556 0.87482 0.95968 0.86960 1.23077 0.93855 1.02582 0.97916 1.20882 0.92795 0.95840 0.84236 1.44714 1.28762 1.58018 1.03338 1.19434 1.08403 1.25406 0.84018 0.90602 1.25641 0.97784 1.00542 1.01755 1.70199 1.17774 1.40320 1.31390 0.85011 0.77709 0.77207 0.79403 1.19242 1.21959 1.21345 1.22083 0.89991 0.94249 0.93830 1.22070 0.91061 0.99491 0.81792 1.21174 1.01099 0.90416 1.04467 0.88809 0.87598 0.87130 0.89359 0.85331 0.89013 0.74663 0.90193 0.88184 0.97471 0.96786 0.94403 0.93950 0.95538 0.86154 0.89957 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 8.74 71.24 0.62 0.10 16 2 C 0.06 0.98 6.87 43.19 0.30 1.28 16 3 N -0.21 -4.22 10.74 -47.43 -0.51 -4.73 16 4 N -0.34 -8.78 3.62 -493.00 -1.78 -10.56 16 5 C 0.07 1.42 10.58 127.77 1.35 2.77 16 6 C 0.48 16.29 7.50 85.27 0.64 16.93 16 7 O -0.56 -23.04 13.42 -4.99 -0.07 -23.10 16 8 C -0.27 -8.73 5.95 -19.58 -0.12 -8.85 16 9 C 0.57 21.53 7.74 86.66 0.67 22.20 16 10 O -0.56 -20.95 13.42 -4.04 -0.05 -21.00 16 11 N -0.70 -29.04 5.11 -439.23 -2.25 -31.28 16 12 C 0.13 5.41 3.47 46.38 0.16 5.57 16 13 H 0.11 4.05 7.48 -2.39 -0.02 4.03 16 14 C -0.14 -5.43 6.55 31.78 0.21 -5.22 16 15 C 0.19 9.95 5.36 86.73 0.47 10.41 16 16 N -0.62 -34.59 3.39 -692.00 -2.35 -36.94 16 17 C -0.24 -14.68 10.28 84.03 0.86 -13.81 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.06 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -59.77 10.31 21.65 0.22 -59.55 16 21 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C 0.12 5.78 6.93 86.86 0.60 6.38 16 26 C 0.06 1.44 5.98 -19.17 -0.11 1.32 16 27 C -0.12 -1.96 8.34 71.24 0.59 -1.36 16 28 H 0.09 0.44 8.11 -2.38 -0.02 0.42 16 29 H 0.11 0.31 7.90 -2.39 -0.02 0.29 16 30 H 0.11 0.20 7.89 -2.39 -0.02 0.18 16 31 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.98 7.36 -2.39 -0.02 1.97 16 34 H 0.41 18.71 5.41 -92.71 -0.50 18.21 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.96 16 36 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 38 H 0.01 0.81 7.51 -2.39 -0.02 0.79 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.12 0.86 6.20 -2.38 -0.01 0.84 16 43 H 0.08 1.72 7.60 -2.39 -0.02 1.71 16 44 H 0.09 1.79 7.35 -2.39 -0.02 1.77 16 Total: -1.00 -81.83 355.86 2.48 -79.35 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.53 Total: 23.26 kcal Atomic # 6 Polarization: 27.62 SS G_CDS: 6.71 Total: 34.33 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -6.67 Total: -143.07 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.12 Total: -44.10 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -81.83 2.48 -79.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015470546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.590 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds