Wall clock time and date at job start Tue Mar 31 2020 04:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30531 * 119.69802 * 2 1 4 4 N 1.28269 * 122.98148 * 179.69522 * 3 2 1 5 5 C 1.46501 * 119.03178 * 180.27977 * 4 3 2 6 6 C 1.34683 * 121.93391 * 0.58270 * 4 3 2 7 7 O 1.21905 * 120.46078 * 179.70226 * 6 4 3 8 8 C 1.42324 * 119.07081 * 359.71722 * 6 4 3 9 9 C 1.47407 * 121.30587 * 180.02562 * 8 6 4 10 10 O 1.21603 * 120.00421 * 174.18528 * 9 8 6 11 11 N 1.34774 * 119.99728 * 354.18442 * 9 8 6 12 12 C 1.46503 * 120.00457 * 185.11280 * 11 9 8 13 13 H 1.08999 * 110.88145 * 31.11224 * 12 11 9 14 14 C 1.55149 * 111.00769 * 154.99642 * 12 11 9 15 15 C 1.54326 * 102.93973 * 153.57827 * 14 12 11 16 16 N 1.47022 * 107.27224 * 337.80650 * 15 14 12 17 17 C 1.36939 * 125.64534 * 178.96410 * 16 15 14 18 18 H 1.08010 * 119.99285 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00639 * 359.97438 * 17 16 15 20 20 N 1.31620 * 119.99714 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00258 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47321 * 59.99859 * 21 19 17 23 23 H 1.48506 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47200 * 299.99808 * 21 19 17 25 25 C 1.47422 * 108.70283 * 358.94089 * 16 15 14 26 26 C 1.39326 * 117.39720 * 359.97438 * 8 6 4 27 27 C 1.50696 * 120.98911 * 180.02562 * 26 8 6 28 28 H 1.09001 * 109.47179 * 269.72698 * 1 2 3 29 29 H 1.09001 * 109.46499 * 149.73407 * 1 2 3 30 30 H 1.08991 * 109.47097 * 29.73429 * 1 2 3 31 31 H 1.08992 * 109.47137 * 270.29448 * 5 4 3 32 32 H 1.09006 * 109.46561 * 30.29345 * 5 4 3 33 33 H 1.08997 * 109.47096 * 150.29366 * 5 4 3 34 34 H 0.97007 * 120.00112 * 5.11055 * 11 9 8 35 35 H 1.08998 * 110.72030 * 271.93799 * 14 12 11 36 36 H 1.09000 * 110.72286 * 35.03921 * 14 12 11 37 37 H 1.09002 * 109.88482 * 97.22787 * 15 14 12 38 38 H 1.09007 * 109.87851 * 218.38981 * 15 14 12 39 39 H 0.97005 * 120.00286 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.36543 * 265.29240 * 25 16 15 41 41 H 1.08998 * 110.36865 * 142.96872 * 25 16 15 42 42 H 1.09002 * 109.47024 * 179.97438 * 27 26 8 43 43 H 1.09001 * 109.47568 * 299.98523 * 27 26 8 44 44 H 1.09003 * 109.46947 * 59.98298 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1339 0.0000 4 7 3.4343 1.2073 0.0057 5 6 4.0707 2.5269 0.0114 6 6 4.2110 0.1071 0.0006 7 8 5.4259 0.2082 0.0008 8 6 3.5936 -1.1753 -0.0054 9 6 4.3961 -2.4117 -0.0106 10 8 3.8483 -3.4926 0.0910 11 7 5.7370 -2.3443 -0.1280 12 6 6.5249 -3.5737 -0.2460 13 1 5.9560 -4.3525 -0.7538 14 6 7.8699 -3.3050 -0.9711 15 6 8.7883 -4.4155 -0.4186 16 7 8.2187 -4.8553 0.8634 17 6 8.7259 -5.8428 1.6652 18 1 8.2317 -6.0925 2.5925 19 6 9.8751 -6.5229 1.2861 20 7 10.4776 -6.2182 0.1562 21 14 10.5665 -7.8703 2.3794 22 1 9.5529 -8.9429 2.5443 23 1 11.7894 -8.4359 1.7547 24 1 10.9075 -7.3030 3.7088 25 6 7.0114 -4.0568 1.1432 26 6 2.2010 -1.2163 -0.0051 27 6 1.4634 -2.5304 -0.0106 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3632 -0.8876 -0.5180 30 1 -0.3633 0.8923 -0.5097 31 1 4.2282 2.8587 -1.0147 32 1 3.4269 3.2384 0.5287 33 1 5.0303 2.4652 0.5247 34 1 6.1805 -1.4815 -0.1345 35 1 7.7526 -3.4031 -2.0503 36 1 8.2560 -2.3185 -0.7146 37 1 8.8198 -5.2520 -1.1168 38 1 9.7928 -4.0221 -0.2625 39 1 11.2805 -6.6936 -0.1089 40 1 7.2586 -3.2044 1.7760 41 1 6.2495 -4.6747 1.6182 42 1 0.3894 -2.3443 -0.0089 43 1 1.7331 -3.0948 -0.9033 44 1 1.7343 -3.1028 0.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015470549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:00 Heat of formation + Delta-G solvation = 28.809177 kcal Electronic energy + Delta-G solvation = -27307.056798 eV Core-core repulsion = 23455.108604 eV Total energy + Delta-G solvation = -3851.948193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.46923 -39.53832 -38.42115 -37.25762 -36.00940 -33.89521 -32.59482 -31.84797 -30.88111 -29.11115 -28.38073 -27.25619 -26.55707 -24.97576 -23.99516 -22.54777 -21.00246 -20.21126 -19.95107 -18.94742 -17.71682 -17.16936 -16.95494 -16.47111 -16.15694 -15.45226 -14.76101 -14.56134 -14.39436 -14.26846 -14.10871 -13.95351 -13.66128 -13.55989 -13.21821 -13.08296 -12.94808 -12.58987 -12.37616 -12.32155 -12.09577 -12.05949 -11.72700 -11.55523 -10.93537 -10.83224 -10.67807 -10.27794 -10.19180 -10.14675 -10.07484 -9.79058 -9.66966 -9.54172 -8.81711 -8.56556 -8.48385 -6.76129 -5.64296 -2.97535 -0.13270 1.20139 1.81204 2.57904 3.33636 3.42610 3.46567 3.49908 3.51708 3.58170 4.12015 4.32342 4.41913 4.58484 4.78277 4.84034 4.85643 5.05254 5.13405 5.18490 5.24824 5.32186 5.42509 5.48436 5.50341 5.52230 5.58220 5.69951 5.78293 5.86983 5.91041 6.07929 6.31273 6.46608 6.54145 6.72270 6.79097 7.10011 7.21150 7.61474 7.66588 7.70941 7.86053 7.96277 8.31973 8.51142 9.28872 9.88872 10.54992 11.47633 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.002879 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.587397 B = 9724.688634 C =10399.951901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.056 3.944 3 N -0.209 5.209 4 N -0.342 5.342 5 C 0.080 3.920 6 C 0.495 3.505 7 O -0.523 6.523 8 C -0.225 4.225 9 C 0.570 3.430 10 O -0.537 6.537 11 N -0.699 5.699 12 C 0.126 3.874 13 H 0.095 0.905 14 C -0.149 4.149 15 C 0.181 3.819 16 N -0.604 5.604 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.130 3.870 26 C 0.039 3.961 27 C -0.121 4.121 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.412 0.588 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.606 18.298 -3.122 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 N -0.035 5.035 4 N -0.162 5.162 5 C -0.060 4.060 6 C 0.293 3.707 7 O -0.401 6.401 8 C -0.240 4.240 9 C 0.356 3.644 10 O -0.416 6.416 11 N -0.357 5.357 12 C 0.021 3.979 13 H 0.113 0.887 14 C -0.188 4.188 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.003 3.997 26 C 0.032 3.968 27 C -0.177 4.177 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.072 18.437 -3.079 28.168 hybrid contribution 1.022 -0.880 0.542 1.453 sum -20.050 17.557 -2.537 26.771 Atomic orbital electron populations 1.20644 0.85758 1.04397 1.03989 1.21754 0.98166 0.86666 1.04844 1.70635 0.95098 1.28963 1.08774 1.46530 1.01969 1.10028 1.57650 1.22216 0.99444 0.79729 1.04628 1.17909 0.88122 0.84914 0.79717 1.90729 1.12153 1.85167 1.52061 1.21616 0.94343 0.94042 1.13982 1.17282 0.82683 0.86810 0.77634 1.90782 1.71673 1.28499 1.50617 1.46461 1.05852 1.11785 1.71581 1.22323 0.91365 0.85764 0.98449 0.88670 1.23179 0.95279 1.01023 0.99353 1.21139 0.93695 0.92510 0.87107 1.44391 1.26346 1.40420 1.21930 1.19036 1.06361 1.09163 1.00793 0.90458 1.24801 0.98052 1.00039 0.97677 1.69947 1.21088 1.43748 1.22421 0.86168 0.78237 0.81666 0.79512 1.21150 1.21619 1.21230 1.21813 0.89885 0.94378 0.93628 1.21662 0.92502 0.97521 0.85145 1.21147 0.98706 0.92013 1.05843 0.89722 0.89257 0.89943 0.89905 0.88597 0.87885 0.74399 0.91697 0.91962 0.93229 0.93610 0.93737 0.96309 0.93841 0.90642 0.88591 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.60 36.01 0.35 -0.04 16 2 C 0.06 0.47 6.87 -82.47 -0.57 -0.10 16 3 N -0.21 -1.96 10.77 33.66 0.36 -1.59 16 4 N -0.34 -3.60 3.62 -69.82 -0.25 -3.85 16 5 C 0.08 0.56 10.58 59.85 0.63 1.19 16 6 C 0.49 6.72 7.50 -14.73 -0.11 6.61 16 7 O -0.52 -8.15 13.42 5.00 0.07 -8.09 16 8 C -0.22 -3.14 5.95 -104.19 -0.62 -3.76 16 9 C 0.57 9.79 7.73 -12.53 -0.10 9.69 16 10 O -0.54 -10.06 13.50 5.27 0.07 -9.99 16 11 N -0.70 -12.63 5.12 -52.81 -0.27 -12.90 16 12 C 0.13 2.57 3.38 -65.78 -0.22 2.35 16 13 H 0.10 2.03 7.61 -51.93 -0.40 1.64 16 14 C -0.15 -3.03 6.60 -24.90 -0.16 -3.19 16 15 C 0.18 4.61 5.37 -3.06 -0.02 4.60 16 16 N -0.60 -16.52 3.39 -170.07 -0.58 -17.09 16 17 C -0.23 -6.62 10.28 -15.06 -0.15 -6.77 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.98 10.31 55.49 0.57 -27.41 16 21 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 C 0.13 3.06 6.93 -2.53 -0.02 3.04 16 26 C 0.04 0.42 5.98 -103.55 -0.62 -0.20 16 27 C -0.12 -1.08 8.27 36.00 0.30 -0.79 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.25 6.18 -51.93 -0.32 -0.07 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.76 7.36 -51.93 -0.38 0.38 16 34 H 0.41 7.29 5.30 -40.82 -0.22 7.07 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 37 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 38 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.39 5.62 -51.93 -0.29 0.10 16 43 H 0.10 0.97 7.62 -51.93 -0.40 0.58 16 44 H 0.10 1.08 7.33 -51.93 -0.38 0.70 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -35.32 354.60 -7.19 -42.51 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.08 Total: 2.95 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -1.41 Total: 12.25 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.17 Total: -62.84 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.14 Total: -18.07 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.32 -7.19 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015470549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.320 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds