Wall clock time and date at job start Tue Mar 31 2020 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30531 * 119.69802 * 2 1 4 4 N 1.28269 * 122.98148 * 179.69522 * 3 2 1 5 5 C 1.46501 * 119.03178 * 180.27977 * 4 3 2 6 6 C 1.34683 * 121.93391 * 0.58270 * 4 3 2 7 7 O 1.21905 * 120.46078 * 179.70226 * 6 4 3 8 8 C 1.42324 * 119.07081 * 359.71722 * 6 4 3 9 9 C 1.47407 * 121.30587 * 180.02562 * 8 6 4 10 10 O 1.21603 * 120.00421 * 174.18528 * 9 8 6 11 11 N 1.34774 * 119.99728 * 354.18442 * 9 8 6 12 12 C 1.46503 * 120.00457 * 185.11280 * 11 9 8 13 13 H 1.08999 * 110.88145 * 31.11224 * 12 11 9 14 14 C 1.55149 * 111.00769 * 154.99642 * 12 11 9 15 15 C 1.54326 * 102.93973 * 153.57827 * 14 12 11 16 16 N 1.47022 * 107.27224 * 337.80650 * 15 14 12 17 17 C 1.36939 * 125.64534 * 178.96410 * 16 15 14 18 18 H 1.08010 * 119.99285 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00639 * 359.97438 * 17 16 15 20 20 N 1.31620 * 119.99714 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00258 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47321 * 59.99859 * 21 19 17 23 23 H 1.48506 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47200 * 299.99808 * 21 19 17 25 25 C 1.47422 * 108.70283 * 358.94089 * 16 15 14 26 26 C 1.39326 * 117.39720 * 359.97438 * 8 6 4 27 27 C 1.50696 * 120.98911 * 180.02562 * 26 8 6 28 28 H 1.09001 * 109.47179 * 269.72698 * 1 2 3 29 29 H 1.09001 * 109.46499 * 149.73407 * 1 2 3 30 30 H 1.08991 * 109.47097 * 29.73429 * 1 2 3 31 31 H 1.08992 * 109.47137 * 270.29448 * 5 4 3 32 32 H 1.09006 * 109.46561 * 30.29345 * 5 4 3 33 33 H 1.08997 * 109.47096 * 150.29366 * 5 4 3 34 34 H 0.97007 * 120.00112 * 5.11055 * 11 9 8 35 35 H 1.08998 * 110.72030 * 271.93799 * 14 12 11 36 36 H 1.09000 * 110.72286 * 35.03921 * 14 12 11 37 37 H 1.09002 * 109.88482 * 97.22787 * 15 14 12 38 38 H 1.09007 * 109.87851 * 218.38981 * 15 14 12 39 39 H 0.97005 * 120.00286 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.36543 * 265.29240 * 25 16 15 41 41 H 1.08998 * 110.36865 * 142.96872 * 25 16 15 42 42 H 1.09002 * 109.47024 * 179.97438 * 27 26 8 43 43 H 1.09001 * 109.47568 * 299.98523 * 27 26 8 44 44 H 1.09003 * 109.46947 * 59.98298 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1339 0.0000 4 7 3.4343 1.2073 0.0057 5 6 4.0707 2.5269 0.0114 6 6 4.2110 0.1071 0.0006 7 8 5.4259 0.2082 0.0008 8 6 3.5936 -1.1753 -0.0054 9 6 4.3961 -2.4117 -0.0106 10 8 3.8483 -3.4926 0.0910 11 7 5.7370 -2.3443 -0.1280 12 6 6.5249 -3.5737 -0.2460 13 1 5.9560 -4.3525 -0.7538 14 6 7.8699 -3.3050 -0.9711 15 6 8.7883 -4.4155 -0.4186 16 7 8.2187 -4.8553 0.8634 17 6 8.7259 -5.8428 1.6652 18 1 8.2317 -6.0925 2.5925 19 6 9.8751 -6.5229 1.2861 20 7 10.4776 -6.2182 0.1562 21 14 10.5665 -7.8703 2.3794 22 1 9.5529 -8.9429 2.5443 23 1 11.7894 -8.4359 1.7547 24 1 10.9075 -7.3030 3.7088 25 6 7.0114 -4.0568 1.1432 26 6 2.2010 -1.2163 -0.0051 27 6 1.4634 -2.5304 -0.0106 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3632 -0.8876 -0.5180 30 1 -0.3633 0.8923 -0.5097 31 1 4.2282 2.8587 -1.0147 32 1 3.4269 3.2384 0.5287 33 1 5.0303 2.4652 0.5247 34 1 6.1805 -1.4815 -0.1345 35 1 7.7526 -3.4031 -2.0503 36 1 8.2560 -2.3185 -0.7146 37 1 8.8198 -5.2520 -1.1168 38 1 9.7928 -4.0221 -0.2625 39 1 11.2805 -6.6936 -0.1089 40 1 7.2586 -3.2044 1.7760 41 1 6.2495 -4.6747 1.6182 42 1 0.3894 -2.3443 -0.0089 43 1 1.7331 -3.0948 -0.9033 44 1 1.7343 -3.1028 0.8767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015470549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:59 Heat of formation + Delta-G solvation = 3.478615 kcal Electronic energy + Delta-G solvation = -27308.155213 eV Core-core repulsion = 23455.108604 eV Total energy + Delta-G solvation = -3853.046609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33074 -40.89931 -39.36188 -39.01184 -36.90514 -35.61733 -33.78636 -33.41630 -31.69045 -30.99953 -29.27418 -28.79845 -27.41350 -26.59953 -25.37983 -23.36521 -22.43149 -21.98120 -21.69040 -19.97750 -19.10270 -18.46992 -17.99747 -17.66251 -17.47332 -16.82014 -16.55356 -16.10158 -15.82405 -15.51759 -15.03285 -14.90757 -14.75869 -14.45151 -14.28343 -14.22865 -14.02318 -13.79552 -13.73554 -13.61900 -13.46090 -12.98153 -12.88708 -12.75587 -12.59698 -12.44343 -12.41540 -12.14756 -12.09468 -11.83584 -11.65531 -11.26418 -11.00552 -10.78802 -10.74122 -10.10703 -9.62877 -8.96594 -7.88251 -5.25699 -1.04344 0.35766 1.05226 1.43911 1.48523 1.49943 1.54898 2.05281 2.33242 2.48804 2.77365 3.24621 3.29774 3.43378 3.59600 3.64321 3.79345 3.99879 4.03308 4.14291 4.29128 4.32369 4.35130 4.45976 4.51931 4.64918 4.69345 4.70871 4.72256 4.79009 4.82109 4.89924 4.95417 5.00649 5.07523 5.23755 5.38156 5.44522 5.50724 5.57552 5.67803 6.14267 6.24858 6.56378 6.90934 7.05319 7.16113 7.70087 8.35292 9.22097 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.002879 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.587397 B = 9724.688634 C =10399.951901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.059 3.941 3 N -0.203 5.203 4 N -0.339 5.339 5 C 0.073 3.927 6 C 0.487 3.513 7 O -0.556 6.556 8 C -0.267 4.267 9 C 0.569 3.431 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.144 3.856 13 H 0.085 0.915 14 C -0.131 4.131 15 C 0.189 3.811 16 N -0.624 5.624 17 C -0.251 4.251 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.985 3.015 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.131 3.869 26 C 0.065 3.935 27 C -0.121 4.121 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.415 0.585 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.021 0.979 38 H 0.016 0.984 39 H 0.250 0.750 40 H 0.019 0.981 41 H 0.033 0.967 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.476 19.746 -2.984 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 N -0.028 5.028 4 N -0.158 5.158 5 C -0.066 4.066 6 C 0.287 3.713 7 O -0.437 6.437 8 C -0.281 4.281 9 C 0.356 3.644 10 O -0.441 6.441 11 N -0.359 5.359 12 C 0.038 3.962 13 H 0.103 0.897 14 C -0.170 4.170 15 C 0.063 3.937 16 N -0.351 5.351 17 C -0.380 4.380 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.812 3.188 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.005 3.995 26 C 0.056 3.944 27 C -0.177 4.177 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.260 0.740 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.998 19.946 -2.937 31.343 hybrid contribution 1.735 -1.267 0.519 2.210 sum -22.263 18.679 -2.418 29.161 Atomic orbital electron populations 1.20888 0.82177 1.06099 1.05634 1.22467 1.00096 0.85306 1.03116 1.70797 0.94290 1.29205 1.08542 1.46723 1.02267 1.10296 1.56493 1.22498 0.99586 0.78575 1.05910 1.17920 0.87947 0.85608 0.79811 1.90684 1.13325 1.85616 1.54104 1.21363 0.95463 0.92919 1.18386 1.17748 0.82330 0.87845 0.76428 1.90759 1.71940 1.29785 1.51598 1.46382 1.06330 1.10761 1.72381 1.21889 0.91546 0.86672 0.96085 0.89659 1.22998 0.93791 0.99622 1.00570 1.20909 0.93601 0.92941 0.86218 1.44677 1.27594 1.40557 1.22307 1.19420 1.07003 1.10105 1.01445 0.90311 1.25713 0.98290 1.02423 0.99222 1.70164 1.21157 1.44618 1.23889 0.85068 0.77335 0.78623 0.77765 1.20202 1.21508 1.20266 1.21870 0.88468 0.93656 0.95551 1.22031 0.91331 0.99251 0.81763 1.21234 1.01340 0.90778 1.04391 0.87917 0.87297 0.88536 0.88477 0.85903 0.88675 0.74002 0.89134 0.90508 0.96112 0.96562 0.94096 0.96355 0.94858 0.86047 0.89649 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 9.60 71.24 0.68 0.34 16 2 C 0.06 0.80 6.87 43.19 0.30 1.10 16 3 N -0.20 -3.21 10.77 -47.43 -0.51 -3.72 16 4 N -0.34 -6.57 3.62 -493.00 -1.78 -8.36 16 5 C 0.07 0.89 10.58 127.77 1.35 2.24 16 6 C 0.49 13.06 7.50 85.27 0.64 13.70 16 7 O -0.56 -17.57 13.42 -5.01 -0.07 -17.64 16 8 C -0.27 -7.35 5.95 -19.58 -0.12 -7.46 16 9 C 0.57 19.82 7.73 86.66 0.67 20.49 16 10 O -0.56 -21.40 13.50 -4.04 -0.05 -21.46 16 11 N -0.70 -25.74 5.12 -439.25 -2.25 -27.99 16 12 C 0.14 6.02 3.38 46.38 0.16 6.17 16 13 H 0.09 3.74 7.61 -2.39 -0.02 3.72 16 14 C -0.13 -5.37 6.60 31.78 0.21 -5.16 16 15 C 0.19 10.01 5.37 86.73 0.47 10.47 16 16 N -0.62 -35.36 3.39 -691.97 -2.35 -37.71 16 17 C -0.25 -15.16 10.28 84.03 0.86 -14.30 16 18 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.06 -3.78 5.49 84.86 0.47 -3.32 16 20 N -0.95 -59.18 10.31 21.65 0.22 -58.96 16 21 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C 0.13 6.37 6.93 86.86 0.60 6.97 16 26 C 0.06 1.24 5.98 -19.17 -0.11 1.13 16 27 C -0.12 -1.92 8.27 71.23 0.59 -1.33 16 28 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.11 0.03 6.18 -2.39 -0.01 0.01 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.09 1.34 7.36 -2.39 -0.02 1.33 16 34 H 0.41 14.93 5.30 -92.70 -0.49 14.44 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.08 2.93 8.00 -2.39 -0.02 2.91 16 37 H 0.02 1.20 7.38 -2.39 -0.02 1.18 16 38 H 0.02 0.94 7.51 -2.38 -0.02 0.92 16 39 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.12 0.75 5.62 -2.39 -0.01 0.74 16 43 H 0.09 1.62 7.62 -2.39 -0.02 1.60 16 44 H 0.09 1.73 7.33 -2.39 -0.02 1.72 16 Total: -1.00 -80.08 354.60 2.54 -77.53 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.55 Total: 17.53 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.76 Total: 31.05 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -6.67 Total: -136.74 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.12 Total: -39.09 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -80.08 2.54 -77.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015470549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.011 kcal (2) G-P(sol) polarization free energy of solvation -80.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds