Wall clock time and date at job start Tue Mar 31 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30642 * 128.64197 * 2 1 4 4 O 1.20846 * 109.62117 * 180.02562 * 3 2 1 5 5 N 1.20900 * 115.90572 * 359.73614 * 4 3 2 6 6 C 1.31608 * 109.18036 * 0.43005 * 5 4 3 7 7 C 1.48272 * 128.71222 * 179.88784 * 6 5 4 8 8 O 1.21499 * 120.00162 * 185.15055 * 7 6 5 9 9 N 1.34779 * 120.00211 * 5.14381 * 7 6 5 10 10 C 1.47067 * 120.84275 * 354.91344 * 9 7 6 11 11 C 1.53126 * 109.11823 * 126.62081 * 10 9 7 12 12 C 1.53138 * 109.62234 * 53.94724 * 11 10 9 13 13 C 1.52813 * 109.27099 * 299.15838 * 12 11 10 14 14 H 1.09000 * 109.47023 * 301.99637 * 13 12 11 15 15 C 1.53059 * 110.34080 * 181.44303 * 13 12 11 16 16 N 1.46655 * 108.55474 * 184.79543 * 15 13 12 17 17 C 1.36942 * 120.40791 * 233.25219 * 16 15 13 18 18 H 1.08002 * 119.99856 * 148.74080 * 17 16 15 19 19 C 1.38810 * 119.99857 * 328.73837 * 17 16 15 20 20 N 1.31613 * 120.00261 * 350.28602 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 170.28102 * 19 17 16 22 22 H 1.48503 * 109.47036 * 59.99797 * 21 19 17 23 23 H 1.48498 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 300.00322 * 21 19 17 25 25 C 1.46858 * 119.12097 * 53.10104 * 16 15 13 26 26 C 1.53319 * 109.10078 * 307.47699 * 25 16 15 27 27 C 1.46728 * 120.86204 * 174.80263 * 9 7 6 28 28 H 1.09000 * 109.45883 * 114.75810 * 27 9 7 29 29 H 1.08997 * 109.47129 * 269.97228 * 1 2 3 30 30 H 1.09002 * 109.47155 * 29.97372 * 1 2 3 31 31 H 1.09003 * 109.46679 * 149.97405 * 1 2 3 32 32 H 1.09001 * 109.54369 * 6.70306 * 10 9 7 33 33 H 1.09005 * 109.54451 * 246.53432 * 10 9 7 34 34 H 1.09000 * 109.44608 * 173.99899 * 11 10 9 35 35 H 1.09007 * 109.44665 * 293.93232 * 11 10 9 36 36 H 1.09009 * 109.50450 * 59.09786 * 12 11 10 37 37 H 1.09000 * 109.50680 * 179.17637 * 12 11 10 38 38 H 1.08999 * 109.69307 * 304.27663 * 15 13 12 39 39 H 1.09003 * 109.68997 * 64.85613 * 15 13 12 40 40 H 0.97005 * 120.00430 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.53861 * 187.59160 * 25 16 15 42 42 H 1.09004 * 109.53521 * 67.36087 * 25 16 15 43 43 H 1.08995 * 109.55673 * 294.26298 * 26 25 16 44 44 H 1.08998 * 109.64406 * 173.99539 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4653 0.6265 -0.0005 5 7 3.6102 -0.5737 0.0041 6 6 2.4280 -1.1520 -0.0007 7 6 2.1034 -2.5988 -0.0002 8 8 0.9483 -2.9623 -0.0996 9 7 3.0896 -3.5107 0.1105 10 6 4.5010 -3.0975 0.1200 11 6 5.1862 -3.6814 1.3587 12 6 4.9693 -5.1968 1.4001 13 6 3.4717 -5.4899 1.4812 14 1 3.0545 -5.0078 2.3653 15 6 3.2284 -6.9990 1.5600 16 7 1.7826 -7.2413 1.5201 17 6 1.1793 -7.9965 2.4902 18 1 0.1598 -7.7890 2.7801 19 6 1.8781 -9.0289 3.1007 20 7 3.0442 -9.4074 2.6222 21 14 1.1634 -9.8807 4.6017 22 1 -0.1434 -10.4915 4.2489 23 1 2.0974 -10.9397 5.0615 24 1 0.9682 -8.8876 5.6885 25 6 0.9905 -6.6606 0.4283 26 6 1.2740 -5.1559 0.3480 27 6 2.7828 -4.9408 0.2269 28 1 3.1562 -5.4651 -0.6528 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 4.5623 -2.0096 0.1482 33 1 4.9953 -3.4673 -0.7784 34 1 6.2544 -3.4687 1.3167 35 1 4.7613 -3.2298 2.2552 36 1 5.3800 -5.6481 0.4968 37 1 5.4700 -5.6124 2.2745 38 1 3.7016 -7.4921 0.7109 39 1 3.6422 -7.3896 2.4897 40 1 3.5324 -10.1291 3.0487 41 1 -0.0701 -6.8217 0.6217 42 1 1.2663 -7.1341 -0.5140 43 1 0.9069 -4.6669 1.2503 44 1 0.7742 -4.7349 -0.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021749097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:16 Heat of formation + Delta-G solvation = 123.571893 kcal Electronic energy + Delta-G solvation = -28470.470060 eV Core-core repulsion = 24622.631087 eV Total energy + Delta-G solvation = -3847.838974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.06139 -40.60384 -37.90688 -36.07978 -35.39815 -34.84919 -32.95362 -32.58264 -30.30545 -29.74494 -29.20438 -26.38527 -25.61473 -24.37937 -22.78268 -22.61448 -22.37038 -20.62036 -19.70418 -19.36632 -19.21321 -17.86453 -16.93672 -16.71002 -15.96048 -15.26104 -14.80879 -14.70767 -14.35007 -14.18256 -13.94751 -13.78665 -13.63305 -13.47138 -13.17223 -12.99449 -12.53888 -12.46877 -12.28885 -12.07811 -11.87837 -11.60730 -11.37382 -11.00484 -10.88978 -10.84552 -10.74165 -10.61818 -10.49706 -10.29896 -10.14240 -10.02864 -9.84057 -9.49657 -9.13849 -8.50701 -8.39935 -6.60010 -5.78293 -3.26040 0.58161 1.11030 2.50077 2.89986 3.17634 3.23259 3.38235 3.43172 3.44633 3.65544 4.34023 4.48775 4.51396 4.87452 4.96608 5.04792 5.15793 5.20494 5.33306 5.34064 5.39763 5.48382 5.52587 5.71515 5.74734 5.77610 5.89588 5.96084 6.08691 6.23300 6.24288 6.33903 6.41080 6.52816 6.60610 6.75335 6.88616 6.94632 7.09801 7.29036 7.40664 7.67173 7.79272 7.97042 8.26822 8.48752 9.23369 9.84624 10.41392 11.29443 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.003675 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.082195 B = 7617.997158 C = 8315.137636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.059 3.941 3 N -0.359 5.359 4 O 0.329 5.671 5 N -0.323 5.323 6 C -0.031 4.031 7 C 0.598 3.402 8 O -0.504 6.504 9 N -0.583 5.583 10 C 0.079 3.921 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.121 4.121 14 H 0.066 0.934 15 C 0.183 3.817 16 N -0.594 5.594 17 C -0.252 4.252 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.141 3.859 26 C -0.126 4.126 27 C 0.157 3.843 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.063 0.937 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 17.639 -6.205 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.085 5.085 4 O 0.109 5.891 5 N -0.048 5.048 6 C -0.196 4.196 7 C 0.381 3.619 8 O -0.378 6.378 9 N -0.315 5.315 10 C -0.044 4.044 11 C -0.168 4.168 12 C -0.151 4.151 13 C -0.142 4.142 14 H 0.085 0.915 15 C 0.057 3.943 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.014 3.986 26 C -0.165 4.165 27 C 0.056 3.944 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.692 17.985 -6.197 19.212 hybrid contribution -0.665 -0.989 0.852 1.465 sum 2.028 16.995 -5.345 17.931 Atomic orbital electron populations 1.20358 0.82916 1.05298 1.04795 1.26231 1.00374 0.85200 0.98847 1.75042 0.91218 1.24082 1.18114 1.85064 1.23336 1.17326 1.63384 1.75168 1.22767 0.92525 1.14324 1.26518 0.87775 0.98958 1.06364 1.16729 0.85643 0.81104 0.78416 1.90853 1.19440 1.77786 1.49766 1.48237 1.06125 1.07654 1.69506 1.22480 0.80268 1.02620 0.99040 1.21879 1.00137 0.97224 0.97546 1.21510 0.97118 0.94149 1.02359 1.22323 0.93555 1.01849 0.96481 0.91548 1.20736 0.84789 0.86716 1.02088 1.43977 1.03423 1.58482 1.25693 1.19169 0.98413 1.08010 1.12583 0.91869 1.25142 0.97682 0.96530 1.00035 1.69938 1.14726 1.29825 1.40670 0.86342 0.78308 0.79050 0.82871 1.20835 1.21598 1.21035 1.21099 0.95898 0.90529 0.91056 1.22584 0.92433 0.98255 1.03235 1.21493 0.98000 0.76285 0.98601 0.91033 0.88845 0.89574 0.87719 0.86896 0.91117 0.90891 0.91941 0.91971 0.91371 0.96309 0.88785 0.93561 0.92479 0.96619 0.91812 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.25 36.00 0.37 -0.28 16 2 C 0.06 0.66 7.79 -79.33 -0.62 0.05 16 3 N -0.36 -4.06 12.22 33.76 0.41 -3.65 16 4 O 0.33 3.66 11.65 27.26 0.32 3.98 16 5 N -0.32 -3.83 8.88 33.50 0.30 -3.53 16 6 C -0.03 -0.40 7.27 -80.07 -0.58 -0.98 16 7 C 0.60 9.00 7.61 -12.13 -0.09 8.91 16 8 O -0.50 -8.38 11.62 5.37 0.06 -8.32 16 9 N -0.58 -8.75 2.98 -166.25 -0.49 -9.24 16 10 C 0.08 0.98 6.34 -3.67 -0.02 0.96 16 11 C -0.13 -1.62 6.07 -26.60 -0.16 -1.78 16 12 C -0.11 -1.70 5.24 -26.76 -0.14 -1.84 16 13 C -0.12 -2.24 2.21 -90.54 -0.20 -2.44 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.18 4.23 4.55 -3.93 -0.02 4.21 16 16 N -0.59 -14.82 2.99 -172.59 -0.52 -15.34 16 17 C -0.25 -6.91 9.57 -15.06 -0.14 -7.05 16 18 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 19 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 20 N -0.91 -25.83 10.98 55.49 0.61 -25.22 16 21 Si 0.90 21.61 29.56 -169.99 -5.03 16.59 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.14 3.03 6.50 -3.68 -0.02 3.00 16 26 C -0.13 -2.37 3.83 -26.62 -0.10 -2.47 16 27 C 0.16 2.71 2.63 -67.72 -0.18 2.53 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.97 7.24 -51.93 -0.38 0.59 16 32 H 0.11 1.34 3.89 -64.72 -0.25 1.09 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 1.31 7.48 -51.93 -0.39 0.92 16 44 H 0.08 1.54 6.11 -51.93 -0.32 1.22 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -29.33 341.55 -7.45 -36.78 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.26 Total: -0.05 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.00 Total: 2.87 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.31 Total: -56.98 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: 0.38 Total: -4.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.33 -7.45 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021749097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.349 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds