Wall clock time and date at job start Tue Mar 31 2020 04:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30642 * 128.64197 * 2 1 4 4 O 1.20846 * 109.62117 * 180.02562 * 3 2 1 5 5 N 1.20900 * 115.90572 * 359.73614 * 4 3 2 6 6 C 1.31608 * 109.18036 * 0.43005 * 5 4 3 7 7 C 1.48272 * 128.71222 * 179.88784 * 6 5 4 8 8 O 1.21499 * 120.00162 * 185.15055 * 7 6 5 9 9 N 1.34779 * 120.00211 * 5.14381 * 7 6 5 10 10 C 1.47067 * 120.84275 * 354.91344 * 9 7 6 11 11 C 1.53126 * 109.11823 * 126.62081 * 10 9 7 12 12 C 1.53138 * 109.62234 * 53.94724 * 11 10 9 13 13 C 1.52813 * 109.27099 * 299.15838 * 12 11 10 14 14 H 1.09000 * 109.47023 * 301.99637 * 13 12 11 15 15 C 1.53059 * 110.34080 * 181.44303 * 13 12 11 16 16 N 1.46655 * 108.55474 * 184.79543 * 15 13 12 17 17 C 1.36942 * 120.40791 * 233.25219 * 16 15 13 18 18 H 1.08002 * 119.99856 * 148.74080 * 17 16 15 19 19 C 1.38810 * 119.99857 * 328.73837 * 17 16 15 20 20 N 1.31613 * 120.00261 * 350.28602 * 19 17 16 21 21 Si 1.86803 * 119.99892 * 170.28102 * 19 17 16 22 22 H 1.48503 * 109.47036 * 59.99797 * 21 19 17 23 23 H 1.48498 * 109.47173 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47091 * 300.00322 * 21 19 17 25 25 C 1.46858 * 119.12097 * 53.10104 * 16 15 13 26 26 C 1.53319 * 109.10078 * 307.47699 * 25 16 15 27 27 C 1.46728 * 120.86204 * 174.80263 * 9 7 6 28 28 H 1.09000 * 109.45883 * 114.75810 * 27 9 7 29 29 H 1.08997 * 109.47129 * 269.97228 * 1 2 3 30 30 H 1.09002 * 109.47155 * 29.97372 * 1 2 3 31 31 H 1.09003 * 109.46679 * 149.97405 * 1 2 3 32 32 H 1.09001 * 109.54369 * 6.70306 * 10 9 7 33 33 H 1.09005 * 109.54451 * 246.53432 * 10 9 7 34 34 H 1.09000 * 109.44608 * 173.99899 * 11 10 9 35 35 H 1.09007 * 109.44665 * 293.93232 * 11 10 9 36 36 H 1.09009 * 109.50450 * 59.09786 * 12 11 10 37 37 H 1.09000 * 109.50680 * 179.17637 * 12 11 10 38 38 H 1.08999 * 109.69307 * 304.27663 * 15 13 12 39 39 H 1.09003 * 109.68997 * 64.85613 * 15 13 12 40 40 H 0.97005 * 120.00430 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.53861 * 187.59160 * 25 16 15 42 42 H 1.09004 * 109.53521 * 67.36087 * 25 16 15 43 43 H 1.08995 * 109.55673 * 294.26298 * 26 25 16 44 44 H 1.08998 * 109.64406 * 173.99539 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4653 0.6265 -0.0005 5 7 3.6102 -0.5737 0.0041 6 6 2.4280 -1.1520 -0.0007 7 6 2.1034 -2.5988 -0.0002 8 8 0.9483 -2.9623 -0.0996 9 7 3.0896 -3.5107 0.1105 10 6 4.5010 -3.0975 0.1200 11 6 5.1862 -3.6814 1.3587 12 6 4.9693 -5.1968 1.4001 13 6 3.4717 -5.4899 1.4812 14 1 3.0545 -5.0078 2.3653 15 6 3.2284 -6.9990 1.5600 16 7 1.7826 -7.2413 1.5201 17 6 1.1793 -7.9965 2.4902 18 1 0.1598 -7.7890 2.7801 19 6 1.8781 -9.0289 3.1007 20 7 3.0442 -9.4074 2.6222 21 14 1.1634 -9.8807 4.6017 22 1 -0.1434 -10.4915 4.2489 23 1 2.0974 -10.9397 5.0615 24 1 0.9682 -8.8876 5.6885 25 6 0.9905 -6.6606 0.4283 26 6 1.2740 -5.1559 0.3480 27 6 2.7828 -4.9408 0.2269 28 1 3.1562 -5.4651 -0.6528 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5143 32 1 4.5623 -2.0096 0.1482 33 1 4.9953 -3.4673 -0.7784 34 1 6.2544 -3.4687 1.3167 35 1 4.7613 -3.2298 2.2552 36 1 5.3800 -5.6481 0.4968 37 1 5.4700 -5.6124 2.2745 38 1 3.7016 -7.4921 0.7109 39 1 3.6422 -7.3896 2.4897 40 1 3.5324 -10.1291 3.0487 41 1 -0.0701 -6.8217 0.6217 42 1 1.2663 -7.1341 -0.5140 43 1 0.9069 -4.6669 1.2503 44 1 0.7742 -4.7349 -0.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021749097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:15 Heat of formation + Delta-G solvation = 106.946428 kcal Electronic energy + Delta-G solvation = -28471.190994 eV Core-core repulsion = 24622.631087 eV Total energy + Delta-G solvation = -3848.559908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.98592 -41.88465 -39.31386 -37.54271 -36.29344 -35.95880 -34.42225 -34.19330 -31.97582 -30.98266 -30.37233 -27.67579 -27.19908 -25.72686 -24.18675 -23.99565 -23.56211 -21.87135 -21.23330 -20.74875 -20.15891 -18.85871 -18.70724 -18.02894 -17.30051 -16.79319 -16.48028 -15.77478 -15.63863 -15.55235 -15.27951 -15.09365 -14.90547 -14.49391 -14.41715 -14.25667 -14.04789 -13.83626 -13.61013 -13.21860 -13.08220 -12.95326 -12.78892 -12.71400 -12.53478 -12.32449 -12.15437 -12.09342 -11.97748 -11.75630 -11.67124 -11.43467 -11.36539 -11.06768 -10.63380 -10.47290 -9.71967 -8.61432 -7.86991 -5.38522 -0.41312 0.22472 1.36571 1.46251 1.47882 1.54606 1.76850 2.23099 2.32927 2.49779 2.68316 3.26643 3.32554 3.57895 3.62919 3.82263 3.87389 3.94541 4.02497 4.08426 4.23778 4.32862 4.40288 4.58636 4.59523 4.68001 4.70114 4.78981 4.81877 4.86079 4.91177 5.02222 5.04021 5.09466 5.15842 5.23963 5.35762 5.39754 5.51516 5.53281 5.64186 5.76883 6.15996 6.41412 6.77945 7.16166 7.34728 7.84973 8.36209 9.17727 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.003675 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.082195 B = 7617.997158 C = 8315.137636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.065 3.935 3 N -0.361 5.361 4 O 0.343 5.657 5 N -0.316 5.316 6 C -0.048 4.048 7 C 0.596 3.404 8 O -0.525 6.525 9 N -0.586 5.586 10 C 0.078 3.922 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.108 4.108 14 H 0.044 0.956 15 C 0.193 3.807 16 N -0.613 5.613 17 C -0.269 4.269 18 H 0.060 0.940 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.139 3.861 26 C -0.106 4.106 27 C 0.165 3.835 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.002 0.998 39 H 0.060 0.940 40 H 0.251 0.749 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.044 0.956 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 19.670 -6.578 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 N -0.087 5.087 4 O 0.119 5.881 5 N -0.038 5.038 6 C -0.213 4.213 7 C 0.381 3.619 8 O -0.401 6.401 9 N -0.318 5.318 10 C -0.044 4.044 11 C -0.159 4.159 12 C -0.147 4.147 13 C -0.129 4.129 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.336 5.336 17 C -0.399 4.399 18 H 0.078 0.922 19 C -0.239 4.239 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.013 3.987 26 C -0.145 4.145 27 C 0.063 3.937 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.185 20.030 -6.583 21.323 hybrid contribution -0.831 -1.566 0.935 2.004 sum 2.353 18.464 -5.649 19.452 Atomic orbital electron populations 1.20494 0.81241 1.06031 1.05631 1.26594 1.01346 0.84406 0.97695 1.75076 0.91111 1.23899 1.18606 1.85060 1.23429 1.16844 1.62765 1.75102 1.22377 0.92796 1.13572 1.26147 0.88734 0.98064 1.08327 1.16893 0.85273 0.81968 0.77752 1.90824 1.20216 1.78458 1.50612 1.48188 1.07439 1.06504 1.69633 1.22688 0.78682 1.03300 0.99747 1.21836 1.02183 0.94614 0.97251 1.21477 0.94094 0.96517 1.02650 1.22037 0.96396 0.98117 0.96330 0.93719 1.20498 0.83712 0.89597 0.99493 1.44248 1.04293 1.58749 1.26325 1.19452 0.98561 1.08483 1.13441 0.92246 1.25850 0.98122 0.97264 1.02669 1.70099 1.15732 1.30163 1.41793 0.85353 0.77641 0.77872 0.79612 1.20199 1.21595 1.20577 1.21202 0.95253 0.92236 0.90037 1.22343 0.93857 0.95694 1.02650 1.21178 0.96547 0.78100 0.97863 0.90655 0.87846 0.87292 0.88476 0.85858 0.89378 0.87597 0.92738 0.91052 0.91817 0.97997 0.92138 0.93940 0.92963 0.96462 0.93700 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.25 71.24 0.73 -0.42 16 2 C 0.06 1.32 7.79 45.18 0.35 1.67 16 3 N -0.36 -7.27 12.22 -51.78 -0.63 -7.90 16 4 O 0.34 6.75 11.65 140.84 1.64 8.39 16 5 N -0.32 -6.71 8.88 -52.04 -0.46 -7.17 16 6 C -0.05 -1.15 7.27 44.29 0.32 -0.83 16 7 C 0.60 17.20 7.61 86.91 0.66 17.86 16 8 O -0.53 -17.10 11.62 -3.71 -0.04 -17.14 16 9 N -0.59 -16.73 2.98 -798.19 -2.37 -19.10 16 10 C 0.08 1.73 6.34 86.31 0.55 2.27 16 11 C -0.12 -2.71 6.07 30.68 0.19 -2.52 16 12 C -0.11 -3.17 5.24 30.58 0.16 -3.01 16 13 C -0.11 -4.03 2.21 -10.74 -0.02 -4.05 16 14 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.19 9.23 4.55 86.37 0.39 9.63 16 16 N -0.61 -31.58 2.99 -699.96 -2.09 -33.68 16 17 C -0.27 -15.16 9.57 84.03 0.80 -14.35 16 18 H 0.06 3.31 7.85 -2.91 -0.02 3.29 16 19 C -0.04 -2.43 5.07 84.86 0.43 -2.00 16 20 N -0.93 -54.55 10.98 21.65 0.24 -54.31 16 21 Si 0.97 45.12 29.56 68.60 2.03 47.14 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.14 6.09 6.50 86.42 0.56 6.65 16 26 C -0.11 -4.02 3.83 30.67 0.12 -3.91 16 27 C 0.17 5.63 2.63 45.01 0.12 5.75 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.66 7.24 -2.39 -0.02 1.64 16 32 H 0.12 2.55 3.89 -26.20 -0.10 2.45 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 40 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 41 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 42 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.04 1.86 7.48 -2.39 -0.02 1.84 16 44 H 0.09 3.41 6.11 -2.39 -0.01 3.40 16 Total: -1.00 -64.34 341.55 4.59 -59.75 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.93 Total: 11.28 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.36 Total: 12.74 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.33 Total: -122.16 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 1.60 Total: -8.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.34 4.59 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021749097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.695 kcal (2) G-P(sol) polarization free energy of solvation -64.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds