Wall clock time and date at job start Tue Mar 31 2020 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33224 * 126.01449 * 2 1 4 4 C 1.31543 * 109.75389 * 180.02562 * 3 2 1 5 5 O 1.35212 * 125.48713 * 180.02562 * 4 3 2 6 6 N 1.34940 * 109.01988 * 359.72559 * 4 3 2 7 7 H 0.96991 * 126.55003 * 180.26933 * 6 4 3 8 8 C 1.36718 * 126.01816 * 180.02562 * 2 1 3 9 9 C 1.46378 * 126.82598 * 359.97438 * 8 2 1 10 10 O 1.21738 * 120.00365 * 0.02562 * 9 8 2 11 11 N 1.34778 * 120.00114 * 180.02562 * 9 8 2 12 12 C 1.48550 * 126.16873 * 359.57758 * 11 9 8 13 13 C 1.50357 * 105.18874 * 172.69993 * 12 11 9 14 14 H 1.09002 * 110.05386 * 279.64843 * 13 12 11 15 15 C 1.51006 * 125.53897 * 144.46195 * 13 12 11 16 16 C 1.56400 * 101.59516 * 204.55199 * 15 13 12 17 17 C 1.56790 * 105.80409 * 24.55517 * 16 15 13 18 18 H 1.09006 * 111.27205 * 249.43396 * 17 16 15 19 19 N 1.46498 * 110.22814 * 126.55826 * 17 16 15 20 20 C 1.36940 * 120.00126 * 90.91875 * 19 17 16 21 21 H 1.08003 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00028 * 180.02562 * 20 19 17 23 23 N 1.31612 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47508 * 89.99711 * 24 22 20 26 26 H 1.48499 * 109.47160 * 209.99711 * 24 22 20 27 27 H 1.48505 * 109.46963 * 329.99501 * 24 22 20 28 28 C 1.50290 * 103.74228 * 8.24758 * 17 16 15 29 29 H 1.09000 * 109.98871 * 79.79963 * 28 17 16 30 30 C 1.49692 * 126.06141 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47019 * 269.99746 * 1 2 3 32 32 H 1.09000 * 109.47546 * 29.99368 * 1 2 3 33 33 H 1.09003 * 109.47250 * 150.00261 * 1 2 3 34 34 H 0.96701 * 114.00251 * 90.02409 * 5 4 3 35 35 H 1.08996 * 110.06913 * 53.81820 * 12 11 9 36 36 H 1.09003 * 110.33911 * 291.71878 * 12 11 9 37 37 H 1.08998 * 111.00199 * 322.62615 * 15 13 12 38 38 H 1.09004 * 111.00296 * 86.47548 * 15 13 12 39 39 H 1.08998 * 110.18811 * 144.10466 * 16 15 13 40 40 H 1.09001 * 110.18446 * 265.94464 * 16 15 13 41 41 H 0.96997 * 120.00353 * 270.92820 * 19 17 16 42 42 H 0.97009 * 119.99931 * 179.97438 * 23 22 20 43 43 H 1.09004 * 110.84893 * 36.68608 * 30 11 9 44 44 H 1.09002 * 111.01833 * 273.15421 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6150 1.5464 -0.0002 6 7 3.6181 -0.6386 0.0052 7 1 4.4242 -1.1780 0.0098 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0006 10 8 0.6923 -2.7752 -0.0007 11 7 2.7957 -3.4927 -0.0006 12 6 4.2711 -3.3201 -0.0093 13 6 4.8306 -4.7029 0.1789 14 1 4.8009 -4.9778 1.2333 15 6 6.0920 -5.2337 -0.4593 16 6 5.8219 -6.7742 -0.4557 17 6 4.2624 -6.9342 -0.4275 18 1 3.9228 -7.3303 0.5295 19 7 3.8221 -7.7994 -1.5246 20 6 3.7082 -9.1499 -1.3282 21 1 3.9427 -9.5770 -0.3643 22 6 3.2915 -9.9697 -2.3679 23 7 3.0054 -9.4491 -3.5423 24 14 3.1355 -11.8118 -2.0997 25 1 1.7631 -12.1292 -1.6297 26 1 3.3978 -12.5220 -3.3772 27 1 4.1217 -12.2487 -1.0789 28 6 3.7562 -5.5332 -0.6266 29 1 3.7981 -5.2685 -1.6831 30 6 2.5076 -4.9616 -0.0012 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8900 -0.5138 34 1 4.9243 1.7890 0.8833 35 1 4.5767 -2.6722 0.8122 36 1 4.5983 -2.9051 -0.9627 37 1 6.2026 -4.8589 -1.4768 38 1 6.9672 -4.9892 0.1428 39 1 6.2376 -7.2311 -1.3537 40 1 6.2557 -7.2300 0.4343 41 1 3.6113 -7.4158 -2.3902 42 1 2.7145 -10.0222 -4.2690 43 1 1.6316 -5.1849 -0.6102 44 1 2.3770 -5.3349 1.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026290611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:20 Heat of formation + Delta-G solvation = 23.382809 kcal Electronic energy + Delta-G solvation = -27200.475502 eV Core-core repulsion = 23348.292004 eV Total energy + Delta-G solvation = -3852.183498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60933 -40.59260 -38.67423 -37.69791 -35.62376 -33.78342 -33.29564 -31.18223 -30.98400 -29.67611 -28.77575 -27.10066 -25.62072 -23.89037 -23.11633 -22.43530 -21.42744 -20.37706 -20.15358 -19.24758 -18.89913 -17.65118 -17.18982 -16.59991 -16.58374 -15.91434 -15.54744 -14.94084 -14.83910 -14.41874 -14.04867 -13.96886 -13.61927 -13.45378 -13.01366 -12.96889 -12.84063 -12.63252 -12.36412 -12.26227 -12.06798 -11.69373 -11.55094 -11.21926 -10.88080 -10.82938 -10.62181 -10.58640 -10.38005 -10.26634 -10.19910 -10.05985 -9.86083 -9.65861 -9.00023 -8.94727 -8.58208 -7.04126 -5.82910 -3.12702 0.89165 2.04138 2.37390 2.67307 3.10899 3.39933 3.45178 3.46865 3.49736 3.89852 4.28301 4.50451 4.55590 4.63096 4.79257 4.91274 4.97508 5.04414 5.22549 5.26938 5.43611 5.48611 5.54170 5.64423 5.68792 5.73249 5.78314 5.80276 5.85920 5.88731 6.00201 6.05001 6.18186 6.21394 6.22927 6.32904 6.36820 6.49779 6.67060 6.94601 7.15685 7.27312 7.49706 7.64615 7.94945 8.34875 9.46472 10.01995 10.36136 11.39323 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002880 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.700366 B = 9719.020281 C =10604.206194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.113 3.887 3 N -0.489 5.489 4 C 0.406 3.594 5 O -0.441 6.441 6 N -0.558 5.558 7 H 0.423 0.577 8 C -0.076 4.076 9 C 0.610 3.390 10 O -0.519 6.519 11 N -0.623 5.623 12 C 0.110 3.890 13 C -0.128 4.128 14 H 0.086 0.914 15 C -0.098 4.098 16 C -0.144 4.144 17 C 0.196 3.804 18 H 0.060 0.940 19 N -0.719 5.719 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.118 4.118 29 H 0.083 0.917 30 C 0.131 3.869 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.406 0.594 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 19.425 10.448 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 N -0.220 5.220 4 C 0.104 3.896 5 O -0.242 6.242 6 N -0.181 5.181 7 H 0.267 0.733 8 C -0.190 4.190 9 C 0.399 3.601 10 O -0.395 6.395 11 N -0.358 5.358 12 C -0.013 4.013 13 C -0.148 4.148 14 H 0.104 0.896 15 C -0.136 4.136 16 C -0.185 4.185 17 C 0.085 3.915 18 H 0.078 0.922 19 N -0.359 5.359 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.138 4.138 29 H 0.102 0.898 30 C 0.010 3.990 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.264 0.736 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.267 19.978 9.891 22.697 hybrid contribution 1.110 -1.731 0.263 2.073 sum 5.376 18.247 10.154 21.563 Atomic orbital electron populations 1.20359 0.85811 1.04110 1.03367 1.20955 0.96927 0.85754 0.98583 1.70280 0.98607 1.30427 1.22649 1.20209 0.87441 0.78856 1.03046 1.84850 1.43308 1.61633 1.34413 1.44303 1.09194 1.07979 1.56589 0.73271 1.20812 0.82923 0.95142 1.20162 1.16272 0.85063 0.81736 0.77039 1.90864 1.15211 1.82469 1.50957 1.49608 1.05683 1.07282 1.73205 1.21299 0.80842 0.98611 1.00505 1.22152 0.98100 0.93079 1.01455 0.89572 1.21763 0.94719 0.97188 0.99917 1.23963 0.99600 0.92818 1.02098 1.20272 0.90864 0.87078 0.93314 0.92238 1.42491 1.79442 1.03914 1.10074 1.19231 1.38185 0.83329 0.96721 0.91107 1.24751 1.02024 0.98089 0.95851 1.69656 1.51746 1.34407 1.02064 0.86209 0.77819 0.85434 0.76816 1.21645 1.21782 1.20751 1.22585 0.93129 0.97935 1.00152 0.89840 1.21574 0.98968 0.76957 1.01470 0.90402 0.90778 0.88800 0.73610 0.91854 0.91204 0.91540 0.92055 0.90628 0.92605 0.78136 0.93419 0.89343 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.87 36.01 0.36 -0.52 16 2 C 0.11 1.44 7.14 -82.54 -0.59 0.85 16 3 N -0.49 -6.19 11.22 -10.83 -0.12 -6.32 16 4 C 0.41 4.17 9.43 -89.59 -0.84 3.32 16 5 O -0.44 -3.20 13.62 -17.33 -0.24 -3.44 16 6 N -0.56 -5.35 5.73 -10.90 -0.06 -5.42 16 7 H 0.42 3.03 5.20 -40.82 -0.21 2.82 16 8 C -0.08 -0.94 6.91 -81.97 -0.57 -1.51 16 9 C 0.61 8.72 7.84 -12.99 -0.10 8.62 16 10 O -0.52 -8.83 15.13 5.16 0.08 -8.75 16 11 N -0.62 -8.02 3.41 -173.79 -0.59 -8.61 16 12 C 0.11 1.07 4.95 -4.23 -0.02 1.04 16 13 C -0.13 -1.40 2.79 -90.26 -0.25 -1.65 16 14 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.10 -1.10 6.72 -25.91 -0.17 -1.27 16 16 C -0.14 -2.18 6.75 -22.86 -0.15 -2.33 16 17 C 0.20 3.46 3.46 -67.23 -0.23 3.22 16 18 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 19 N -0.72 -16.81 5.10 -52.75 -0.27 -17.08 16 20 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 21 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 24 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 28 C -0.12 -1.73 2.40 -90.35 -0.22 -1.94 16 29 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 30 C 0.13 1.89 6.80 -3.32 -0.02 1.87 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.15 6.46 -51.93 -0.34 0.81 16 34 H 0.41 0.68 9.06 45.56 0.41 1.10 16 35 H 0.06 0.46 6.67 -51.93 -0.35 0.12 16 36 H 0.07 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 1.33 8.00 -51.93 -0.42 0.92 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.38 9.71 7.67 -40.82 -0.31 9.40 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -33.31 356.70 -8.56 -41.87 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.37 Total: 9.54 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -3.07 Total: 2.71 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.32 Total: -64.13 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.16 Total: -12.19 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.31 -8.56 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026290611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.254 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds