Wall clock time and date at job start Tue Mar 31 2020 04:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33224 * 126.01449 * 2 1 4 4 C 1.31543 * 109.75389 * 180.02562 * 3 2 1 5 5 O 1.35212 * 125.48713 * 180.02562 * 4 3 2 6 6 N 1.34940 * 109.01988 * 359.72559 * 4 3 2 7 7 H 0.96991 * 126.55003 * 180.26933 * 6 4 3 8 8 C 1.36718 * 126.01816 * 180.02562 * 2 1 3 9 9 C 1.46378 * 126.82598 * 359.97438 * 8 2 1 10 10 O 1.21738 * 120.00365 * 0.02562 * 9 8 2 11 11 N 1.34778 * 120.00114 * 180.02562 * 9 8 2 12 12 C 1.48550 * 126.16873 * 359.57758 * 11 9 8 13 13 C 1.50357 * 105.18874 * 172.69993 * 12 11 9 14 14 H 1.09002 * 110.05386 * 279.64843 * 13 12 11 15 15 C 1.51006 * 125.53897 * 144.46195 * 13 12 11 16 16 C 1.56400 * 101.59516 * 204.55199 * 15 13 12 17 17 C 1.56790 * 105.80409 * 24.55517 * 16 15 13 18 18 H 1.09006 * 111.27205 * 249.43396 * 17 16 15 19 19 N 1.46498 * 110.22814 * 126.55826 * 17 16 15 20 20 C 1.36940 * 120.00126 * 90.91875 * 19 17 16 21 21 H 1.08003 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00028 * 180.02562 * 20 19 17 23 23 N 1.31612 * 119.99965 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47508 * 89.99711 * 24 22 20 26 26 H 1.48499 * 109.47160 * 209.99711 * 24 22 20 27 27 H 1.48505 * 109.46963 * 329.99501 * 24 22 20 28 28 C 1.50290 * 103.74228 * 8.24758 * 17 16 15 29 29 H 1.09000 * 109.98871 * 79.79963 * 28 17 16 30 30 C 1.49692 * 126.06141 * 180.02562 * 11 9 8 31 31 H 1.09007 * 109.47019 * 269.99746 * 1 2 3 32 32 H 1.09000 * 109.47546 * 29.99368 * 1 2 3 33 33 H 1.09003 * 109.47250 * 150.00261 * 1 2 3 34 34 H 0.96701 * 114.00251 * 90.02409 * 5 4 3 35 35 H 1.08996 * 110.06913 * 53.81820 * 12 11 9 36 36 H 1.09003 * 110.33911 * 291.71878 * 12 11 9 37 37 H 1.08998 * 111.00199 * 322.62615 * 15 13 12 38 38 H 1.09004 * 111.00296 * 86.47548 * 15 13 12 39 39 H 1.08998 * 110.18811 * 144.10466 * 16 15 13 40 40 H 1.09001 * 110.18446 * 265.94464 * 16 15 13 41 41 H 0.96997 * 120.00353 * 270.92820 * 19 17 16 42 42 H 0.97009 * 119.99931 * 179.97438 * 23 22 20 43 43 H 1.09004 * 110.84893 * 36.68608 * 30 11 9 44 44 H 1.09002 * 111.01833 * 273.15421 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6150 1.5464 -0.0002 6 7 3.6181 -0.6386 0.0052 7 1 4.4242 -1.1780 0.0098 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0006 10 8 0.6923 -2.7752 -0.0007 11 7 2.7957 -3.4927 -0.0006 12 6 4.2711 -3.3201 -0.0093 13 6 4.8306 -4.7029 0.1789 14 1 4.8009 -4.9778 1.2333 15 6 6.0920 -5.2337 -0.4593 16 6 5.8219 -6.7742 -0.4557 17 6 4.2624 -6.9342 -0.4275 18 1 3.9228 -7.3303 0.5295 19 7 3.8221 -7.7994 -1.5246 20 6 3.7082 -9.1499 -1.3282 21 1 3.9427 -9.5770 -0.3643 22 6 3.2915 -9.9697 -2.3679 23 7 3.0054 -9.4491 -3.5423 24 14 3.1355 -11.8118 -2.0997 25 1 1.7631 -12.1292 -1.6297 26 1 3.3978 -12.5220 -3.3772 27 1 4.1217 -12.2487 -1.0789 28 6 3.7562 -5.5332 -0.6266 29 1 3.7981 -5.2685 -1.6831 30 6 2.5076 -4.9616 -0.0012 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8900 -0.5138 34 1 4.9243 1.7890 0.8833 35 1 4.5767 -2.6722 0.8122 36 1 4.5983 -2.9051 -0.9627 37 1 6.2026 -4.8589 -1.4768 38 1 6.9672 -4.9892 0.1428 39 1 6.2376 -7.2311 -1.3537 40 1 6.2557 -7.2300 0.4343 41 1 3.6113 -7.4158 -2.3902 42 1 2.7145 -10.0222 -4.2690 43 1 1.6316 -5.1849 -0.6102 44 1 2.3770 -5.3349 1.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026290611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:19 Heat of formation + Delta-G solvation = -3.907015 kcal Electronic energy + Delta-G solvation = -27201.658877 eV Core-core repulsion = 23348.292004 eV Total energy + Delta-G solvation = -3853.366874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.45949 -41.67174 -39.76497 -38.37623 -36.95453 -35.26409 -34.33882 -32.71666 -32.05931 -30.78250 -30.04198 -28.02528 -27.09165 -24.96673 -24.79270 -23.35030 -22.37211 -21.48661 -20.99078 -20.49899 -19.69184 -19.14399 -18.49665 -17.70654 -17.48870 -16.91956 -16.60272 -16.42679 -15.98482 -15.58646 -15.40205 -15.23886 -14.71524 -14.53530 -14.33946 -14.14600 -13.66000 -13.62340 -13.35417 -13.22742 -13.20527 -13.07943 -12.99853 -12.64045 -12.48886 -12.29435 -12.12694 -11.82425 -11.65737 -11.49995 -11.37953 -11.23334 -11.14090 -10.99250 -10.86815 -10.01381 -9.47748 -8.98640 -7.93752 -5.21620 0.00888 1.25838 1.47134 1.48614 1.48903 1.56539 1.69588 2.09627 2.56568 2.76043 2.87120 3.40233 3.41885 3.62575 3.73087 3.89807 3.97560 4.00755 4.07097 4.20349 4.27320 4.40758 4.43911 4.46967 4.57363 4.66921 4.72889 4.80903 4.82815 4.88798 4.92680 4.95856 5.01258 5.08048 5.19783 5.34483 5.42318 5.48180 5.49723 5.63172 5.75644 6.24374 6.28563 6.60424 6.65715 6.88490 7.34477 8.11505 8.32515 9.29763 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002880 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.700366 B = 9719.020281 C =10604.206194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.104 3.896 3 N -0.518 5.518 4 C 0.426 3.574 5 O -0.439 6.439 6 N -0.543 5.543 7 H 0.435 0.565 8 C -0.090 4.090 9 C 0.607 3.393 10 O -0.558 6.558 11 N -0.621 5.621 12 C 0.108 3.892 13 C -0.103 4.103 14 H 0.101 0.899 15 C -0.084 4.084 16 C -0.138 4.138 17 C 0.186 3.814 18 H 0.056 0.944 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.299 1.299 27 H -0.267 1.267 28 C -0.122 4.122 29 H 0.064 0.936 30 C 0.133 3.867 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.433 0.567 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 21.232 12.557 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.031 4.031 3 N -0.250 5.250 4 C 0.124 3.876 5 O -0.244 6.244 6 N -0.167 5.167 7 H 0.282 0.718 8 C -0.204 4.204 9 C 0.397 3.603 10 O -0.437 6.437 11 N -0.355 5.355 12 C -0.013 4.013 13 C -0.122 4.122 14 H 0.119 0.881 15 C -0.122 4.122 16 C -0.179 4.179 17 C 0.077 3.923 18 H 0.074 0.926 19 N -0.373 5.373 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.218 1.218 26 H -0.226 1.226 27 H -0.192 1.192 28 C -0.142 4.142 29 H 0.083 0.917 30 C 0.012 3.988 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.296 0.704 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.858 21.813 12.083 25.862 hybrid contribution 0.404 -2.176 -0.323 2.236 sum 7.262 19.637 11.759 24.013 Atomic orbital electron populations 1.20338 0.85529 1.03739 1.03848 1.21192 0.97557 0.86107 0.98244 1.70282 0.99747 1.30631 1.24317 1.20257 0.87569 0.79237 1.00532 1.84827 1.41981 1.60777 1.36838 1.44102 1.08606 1.07868 1.56163 0.71787 1.20418 0.84185 0.93899 1.21946 1.16513 0.84704 0.82566 0.76480 1.90840 1.16890 1.83166 1.52814 1.49571 1.07153 1.06122 1.72645 1.21524 0.78446 0.98501 1.02815 1.22109 0.95973 0.92735 1.01407 0.88123 1.21681 0.96082 0.93565 1.00863 1.23747 0.96658 0.96199 1.01282 1.20574 0.92903 0.87650 0.91197 0.92578 1.42709 1.79946 1.03703 1.10981 1.19637 1.35639 0.84847 0.96539 0.90402 1.25520 1.03351 1.02172 0.95925 1.69815 1.54107 1.35441 1.02869 0.85211 0.77765 0.80730 0.76511 1.21805 1.22563 1.19158 1.22330 0.95153 0.96957 0.99769 0.91734 1.21407 0.97720 0.78477 1.01220 0.89503 0.89734 0.90453 0.70388 0.88123 0.89900 0.91488 0.88420 0.93570 0.91247 0.79780 0.94230 0.92625 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.87 71.24 0.70 -1.01 16 2 C 0.10 2.56 7.14 41.99 0.30 2.86 16 3 N -0.52 -12.14 11.22 -301.66 -3.39 -15.52 16 4 C 0.43 7.43 9.43 179.99 1.70 9.12 16 5 O -0.44 -4.64 13.62 -84.94 -1.16 -5.80 16 6 N -0.54 -8.70 5.73 -300.13 -1.72 -10.42 16 7 H 0.44 4.34 5.20 -92.72 -0.48 3.86 16 8 C -0.09 -2.10 6.91 39.80 0.27 -1.83 16 9 C 0.61 17.12 7.84 86.36 0.68 17.79 16 10 O -0.56 -19.62 15.13 -4.47 -0.07 -19.69 16 11 N -0.62 -15.23 3.41 -821.94 -2.81 -18.03 16 12 C 0.11 1.71 4.95 85.13 0.42 2.13 16 13 C -0.10 -1.89 2.79 -10.56 -0.03 -1.92 16 14 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 15 C -0.08 -1.58 6.72 31.13 0.21 -1.37 16 16 C -0.14 -3.96 6.75 33.10 0.22 -3.74 16 17 C 0.19 6.51 3.46 45.44 0.16 6.66 16 18 H 0.06 1.99 8.09 -2.38 -0.02 1.97 16 19 N -0.73 -35.29 5.10 -320.79 -1.64 -36.93 16 20 C -0.23 -12.59 9.96 84.03 0.84 -11.76 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 23 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 24 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C -0.12 -3.51 2.40 -10.62 -0.03 -3.54 16 29 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 30 C 0.13 3.87 6.80 85.07 0.58 4.45 16 31 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.98 6.46 -2.39 -0.02 1.96 16 34 H 0.43 -0.47 9.06 -74.06 -0.67 -1.14 16 35 H 0.10 0.93 6.67 -2.39 -0.02 0.91 16 36 H 0.08 1.16 7.73 -2.39 -0.02 1.15 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.05 1.61 8.00 -2.39 -0.02 1.59 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.37 19.61 7.67 -92.71 -0.71 18.90 16 42 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.84 356.70 -2.77 -78.62 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.80 Total: 25.13 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.49 Total: 13.93 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -9.26 Total: -139.96 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.22 Total: -25.48 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.84 -2.77 -78.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026290611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.709 kcal (2) G-P(sol) polarization free energy of solvation -75.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds