Wall clock time and date at job start Tue Mar 31 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35270 * 117.00428 * 2 1 4 4 N 1.32774 * 120.61464 * 0.28120 * 3 2 1 5 5 C 1.31729 * 120.87160 * 180.28372 * 4 3 2 6 6 C 1.50703 * 118.89909 * 179.70819 * 5 4 3 7 7 N 1.31934 * 122.19578 * 359.68548 * 5 4 3 8 8 C 1.32178 * 121.14577 * 0.02562 * 7 5 4 9 9 C 1.39812 * 118.97952 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.98512 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00298 * 179.72569 * 10 9 8 12 12 N 1.34783 * 119.99854 * 0.02562 * 10 9 8 13 13 C 1.46495 * 119.99868 * 179.72223 * 12 10 9 14 14 C 1.53002 * 109.46835 * 179.97438 * 13 12 10 15 15 H 1.08993 * 110.64206 * 305.70391 * 14 13 12 16 16 C 1.55163 * 110.72230 * 182.55991 * 14 13 12 17 17 C 1.54903 * 101.58424 * 206.13768 * 16 14 13 18 18 N 1.47423 * 104.83210 * 37.00910 * 17 16 14 19 19 C 1.36936 * 125.64738 * 155.90886 * 18 17 16 20 20 H 1.07997 * 120.00241 * 342.04331 * 19 18 17 21 21 C 1.38819 * 120.00164 * 162.05105 * 19 18 17 22 22 N 1.31618 * 120.00083 * 156.24087 * 21 19 18 23 23 Si 1.86799 * 119.99866 * 336.24289 * 21 19 18 24 24 H 1.48500 * 109.47371 * 84.66803 * 23 21 19 25 25 H 1.48501 * 109.47171 * 204.67056 * 23 21 19 26 26 H 1.48500 * 109.47221 * 324.66939 * 23 21 19 27 27 C 1.47322 * 108.73863 * 335.71451 * 18 17 16 28 28 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47094 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46872 * 59.99818 * 1 2 3 31 31 H 1.08998 * 109.46848 * 269.97707 * 6 5 4 32 32 H 1.08996 * 109.47627 * 29.97898 * 6 5 4 33 33 H 1.09003 * 109.46764 * 149.98111 * 6 5 4 34 34 H 1.08000 * 120.51819 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99936 * 359.72456 * 12 10 9 36 36 H 1.08996 * 109.47485 * 299.99961 * 13 12 10 37 37 H 1.09002 * 109.47309 * 60.00686 * 13 12 10 38 38 H 1.09008 * 111.00040 * 324.21282 * 16 14 13 39 39 H 1.08993 * 111.00193 * 88.01963 * 16 14 13 40 40 H 1.08996 * 110.36729 * 155.84407 * 17 16 14 41 41 H 1.09001 * 110.36670 * 278.06122 * 17 16 14 42 42 H 0.97005 * 119.99815 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.06270 * 241.87238 * 27 18 17 44 44 H 1.08998 * 109.84925 * 120.61112 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2052 0.0000 4 7 1.3321 2.3265 0.0056 5 6 1.9249 3.5028 0.0000 6 6 1.0745 4.7470 0.0001 7 7 3.2383 3.6281 -0.0051 8 6 4.0263 2.5669 -0.0054 9 6 3.4482 1.2939 0.0004 10 6 4.2857 0.0794 -0.0003 11 8 3.7641 -1.0188 0.0099 12 7 5.6292 0.1873 -0.0060 13 6 6.4609 -1.0187 -0.0005 14 6 7.9379 -0.6195 -0.0095 15 1 8.1501 0.0492 -0.8436 16 6 8.8459 -1.8764 -0.0688 17 6 10.1429 -1.3548 0.5985 18 7 9.6801 -0.4570 1.6723 19 6 10.3859 -0.1311 2.7996 20 1 11.2204 -0.7424 3.1099 21 6 10.0287 0.9850 3.5438 22 7 10.3519 1.0576 4.8176 23 14 9.0892 2.3837 2.7374 24 1 7.6363 2.0770 2.7514 25 1 9.3367 3.6423 3.4855 26 1 9.5477 2.5436 1.3340 27 6 8.3345 0.0357 1.3303 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.8657 5.0443 -1.0276 32 1 0.1367 4.5461 0.5178 33 1 1.6062 5.5504 0.5099 34 1 5.1002 2.6813 -0.0093 35 1 6.0453 1.0634 -0.0138 36 1 6.2475 -1.6031 0.8944 37 1 6.2409 -1.6157 -0.8856 38 1 8.4145 -2.6973 0.5042 39 1 9.0299 -2.1770 -1.1001 40 1 10.7140 -2.1836 1.0168 41 1 10.7466 -0.8054 -0.1238 42 1 10.1019 1.8374 5.3377 43 1 8.3496 1.1202 1.2225 44 1 7.6265 -0.2519 2.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028582017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:52 Heat of formation + Delta-G solvation = 10.824638 kcal Electronic energy + Delta-G solvation = -26995.642693 eV Core-core repulsion = 23142.914632 eV Total energy + Delta-G solvation = -3852.728061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72983 -39.50214 -38.88610 -37.95134 -34.80314 -33.95839 -33.06140 -32.51877 -30.57348 -29.45072 -28.66209 -27.72165 -25.74381 -24.31647 -24.00595 -23.20783 -21.03810 -20.33950 -20.13652 -18.90356 -18.24160 -17.67448 -16.91099 -16.68706 -16.22900 -15.64246 -15.25544 -15.10450 -14.86279 -14.78871 -14.62417 -14.08880 -13.61252 -13.39657 -13.36668 -12.98615 -12.81619 -12.73017 -12.50022 -12.37971 -11.97416 -11.95180 -11.71590 -11.59605 -11.32573 -10.98330 -10.73249 -10.63326 -10.59754 -10.25122 -9.93869 -9.89212 -9.75906 -9.42309 -9.36320 -9.00896 -8.64741 -7.08679 -5.96589 -3.24907 0.15424 0.77956 2.51873 2.71826 3.01739 3.28542 3.41530 3.46512 3.47253 3.48810 3.65061 4.33520 4.47112 4.52116 4.72244 4.82068 4.87718 4.93463 4.96203 5.01490 5.04736 5.13452 5.16904 5.23252 5.28575 5.42843 5.47152 5.60938 5.79055 5.82490 5.85035 6.00973 6.06224 6.25331 6.32227 6.40925 6.43992 6.57539 6.71467 6.76801 6.77153 7.40163 7.64433 7.69272 8.13942 8.29743 8.81822 9.67370 10.16165 11.20018 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003599 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.582885 B = 7777.311645 C = 9029.119295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.263 6.263 3 C 0.415 3.585 4 N -0.579 5.579 5 C 0.375 3.625 6 C -0.089 4.089 7 N -0.542 5.542 8 C 0.216 3.784 9 C -0.268 4.268 10 C 0.570 3.430 11 O -0.518 6.518 12 N -0.723 5.723 13 C 0.134 3.866 14 C -0.117 4.117 15 H 0.081 0.919 16 C -0.121 4.121 17 C 0.132 3.868 18 N -0.610 5.610 19 C -0.243 4.243 20 H 0.093 0.907 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.886 3.114 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.279 1.279 27 C 0.124 3.876 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.398 0.602 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.023 0.977 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.122 2.884 -13.923 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.163 6.163 3 C 0.227 3.773 4 N -0.311 5.311 5 C 0.109 3.891 6 C -0.147 4.147 7 N -0.261 5.261 8 C 0.051 3.949 9 C -0.277 4.277 10 C 0.355 3.645 11 O -0.394 6.394 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.137 4.137 15 H 0.099 0.901 16 C -0.160 4.160 17 C 0.007 3.993 18 N -0.337 5.337 19 C -0.370 4.370 20 H 0.111 0.889 21 C -0.178 4.178 22 N -0.550 5.550 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.206 1.206 27 C -0.001 4.001 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.195 0.805 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.925 2.612 -13.662 24.300 hybrid contribution 0.062 0.772 -0.305 0.832 sum -19.863 3.384 -13.967 24.517 Atomic orbital electron populations 1.23074 0.76822 1.03838 1.02637 1.86531 1.22932 1.22429 1.84427 1.20083 0.88233 0.85255 0.83698 1.68078 1.41048 0.98506 1.23449 1.23236 0.88217 0.92227 0.85413 1.20682 0.98382 0.91322 1.04325 1.68312 1.05416 1.33504 1.18881 1.23436 1.00805 0.85736 0.84911 1.20935 0.92459 0.96915 1.17434 1.17473 0.81939 0.87863 0.77221 1.90828 1.72843 1.26873 1.48837 1.45922 1.05535 1.10668 1.75413 1.21453 0.88451 0.86291 1.02668 1.22479 0.92982 0.98947 0.99257 0.90077 1.22727 0.96499 0.96310 1.00428 1.21612 0.93912 0.93551 0.90226 1.44858 1.13149 1.54426 1.21269 1.18676 1.13275 1.07676 0.97348 0.88932 1.24967 0.99127 0.98160 0.95573 1.69860 1.49896 1.29888 1.05343 0.86903 0.79378 0.83061 0.78876 1.21383 1.23185 1.20624 1.21771 0.88764 0.96050 0.93518 0.87843 0.91828 0.91915 0.88984 0.89304 0.88879 0.80504 0.76736 0.90672 0.91051 0.90834 0.91182 0.93137 0.95755 0.92719 0.95961 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.41 101.05 1.05 1.33 16 2 O -0.26 -3.58 8.73 -38.65 -0.34 -3.91 16 3 C 0.42 5.66 7.54 -16.18 -0.12 5.54 16 4 N -0.58 -6.95 9.26 -10.47 -0.10 -7.04 16 5 C 0.37 4.12 7.64 -157.13 -1.20 2.92 16 6 C -0.09 -0.60 10.31 36.01 0.37 -0.23 16 7 N -0.54 -6.52 10.31 -10.44 -0.11 -6.63 16 8 C 0.22 2.58 10.81 -16.81 -0.18 2.39 16 9 C -0.27 -3.66 5.92 -104.56 -0.62 -4.28 16 10 C 0.57 8.67 7.78 -12.47 -0.10 8.58 16 11 O -0.52 -9.40 15.32 -15.85 -0.24 -9.64 16 12 N -0.72 -9.97 5.39 -61.35 -0.33 -10.30 16 13 C 0.13 1.91 5.00 -4.04 -0.02 1.89 16 14 C -0.12 -1.80 2.98 -88.78 -0.26 -2.06 16 15 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.12 -1.79 6.54 -24.58 -0.16 -1.95 16 17 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 18 N -0.61 -14.51 3.22 -169.84 -0.55 -15.06 16 19 C -0.24 -6.87 10.56 -15.06 -0.16 -7.03 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 21 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 22 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 23 Si 0.89 22.31 24.39 -169.99 -4.15 18.16 16 24 H -0.29 -6.84 6.83 56.52 0.39 -6.45 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 27 C 0.12 2.57 4.55 -2.90 -0.01 2.56 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.18 1.68 6.53 -52.49 -0.34 1.34 16 35 H 0.40 4.81 6.53 -40.82 -0.27 4.55 16 36 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.08 8.05 -51.92 -0.42 0.66 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.02 0.50 3.55 -51.93 -0.18 0.32 16 44 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -35.66 360.35 -7.39 -43.05 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.26 Total: 0.55 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: -1.53 Total: 12.64 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.31 Total: -66.27 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.58 Total: -13.56 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.15 Total: 18.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.66 -7.39 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028582017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.877 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds