Wall clock time and date at job start Tue Mar 31 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35270 * 117.00428 * 2 1 4 4 N 1.32774 * 120.61464 * 0.28120 * 3 2 1 5 5 C 1.31729 * 120.87160 * 180.28372 * 4 3 2 6 6 C 1.50703 * 118.89909 * 179.70819 * 5 4 3 7 7 N 1.31934 * 122.19578 * 359.68548 * 5 4 3 8 8 C 1.32178 * 121.14577 * 0.02562 * 7 5 4 9 9 C 1.39812 * 118.97952 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.98512 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00298 * 179.72569 * 10 9 8 12 12 N 1.34783 * 119.99854 * 0.02562 * 10 9 8 13 13 C 1.46495 * 119.99868 * 179.72223 * 12 10 9 14 14 C 1.53002 * 109.46835 * 179.97438 * 13 12 10 15 15 H 1.08993 * 110.64206 * 305.70391 * 14 13 12 16 16 C 1.55163 * 110.72230 * 182.55991 * 14 13 12 17 17 C 1.54903 * 101.58424 * 206.13768 * 16 14 13 18 18 N 1.47423 * 104.83210 * 37.00910 * 17 16 14 19 19 C 1.36936 * 125.64738 * 155.90886 * 18 17 16 20 20 H 1.07997 * 120.00241 * 342.04331 * 19 18 17 21 21 C 1.38819 * 120.00164 * 162.05105 * 19 18 17 22 22 N 1.31618 * 120.00083 * 156.24087 * 21 19 18 23 23 Si 1.86799 * 119.99866 * 336.24289 * 21 19 18 24 24 H 1.48500 * 109.47371 * 84.66803 * 23 21 19 25 25 H 1.48501 * 109.47171 * 204.67056 * 23 21 19 26 26 H 1.48500 * 109.47221 * 324.66939 * 23 21 19 27 27 C 1.47322 * 108.73863 * 335.71451 * 18 17 16 28 28 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47094 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.46872 * 59.99818 * 1 2 3 31 31 H 1.08998 * 109.46848 * 269.97707 * 6 5 4 32 32 H 1.08996 * 109.47627 * 29.97898 * 6 5 4 33 33 H 1.09003 * 109.46764 * 149.98111 * 6 5 4 34 34 H 1.08000 * 120.51819 * 180.02562 * 8 7 5 35 35 H 0.96994 * 119.99936 * 359.72456 * 12 10 9 36 36 H 1.08996 * 109.47485 * 299.99961 * 13 12 10 37 37 H 1.09002 * 109.47309 * 60.00686 * 13 12 10 38 38 H 1.09008 * 111.00040 * 324.21282 * 16 14 13 39 39 H 1.08993 * 111.00193 * 88.01963 * 16 14 13 40 40 H 1.08996 * 110.36729 * 155.84407 * 17 16 14 41 41 H 1.09001 * 110.36670 * 278.06122 * 17 16 14 42 42 H 0.97005 * 119.99815 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.06270 * 241.87238 * 27 18 17 44 44 H 1.08998 * 109.84925 * 120.61112 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2052 0.0000 4 7 1.3321 2.3265 0.0056 5 6 1.9249 3.5028 0.0000 6 6 1.0745 4.7470 0.0001 7 7 3.2383 3.6281 -0.0051 8 6 4.0263 2.5669 -0.0054 9 6 3.4482 1.2939 0.0004 10 6 4.2857 0.0794 -0.0003 11 8 3.7641 -1.0188 0.0099 12 7 5.6292 0.1873 -0.0060 13 6 6.4609 -1.0187 -0.0005 14 6 7.9379 -0.6195 -0.0095 15 1 8.1501 0.0492 -0.8436 16 6 8.8459 -1.8764 -0.0688 17 6 10.1429 -1.3548 0.5985 18 7 9.6801 -0.4570 1.6723 19 6 10.3859 -0.1311 2.7996 20 1 11.2204 -0.7424 3.1099 21 6 10.0287 0.9850 3.5438 22 7 10.3519 1.0576 4.8176 23 14 9.0892 2.3837 2.7374 24 1 7.6363 2.0770 2.7514 25 1 9.3367 3.6423 3.4855 26 1 9.5477 2.5436 1.3340 27 6 8.3345 0.0357 1.3303 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.8657 5.0443 -1.0276 32 1 0.1367 4.5461 0.5178 33 1 1.6062 5.5504 0.5099 34 1 5.1002 2.6813 -0.0093 35 1 6.0453 1.0634 -0.0138 36 1 6.2475 -1.6031 0.8944 37 1 6.2409 -1.6157 -0.8856 38 1 8.4145 -2.6973 0.5042 39 1 9.0299 -2.1770 -1.1001 40 1 10.7140 -2.1836 1.0168 41 1 10.7466 -0.8054 -0.1238 42 1 10.1019 1.8374 5.3377 43 1 8.3496 1.1202 1.2225 44 1 7.6265 -0.2519 2.1075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028582017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:51 Heat of formation + Delta-G solvation = -16.411507 kcal Electronic energy + Delta-G solvation = -26996.823741 eV Core-core repulsion = 23142.914632 eV Total energy + Delta-G solvation = -3853.909109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.62893 -40.66495 -39.77715 -39.40251 -36.12039 -34.94964 -34.38645 -33.88557 -32.18963 -30.49822 -29.86132 -28.57465 -27.27999 -25.51107 -25.14198 -24.28600 -22.35044 -21.79796 -21.44038 -19.79116 -19.18928 -18.99884 -18.62260 -17.80069 -17.55291 -16.86239 -16.40011 -16.10240 -16.01100 -15.68567 -15.60394 -15.50030 -15.19724 -15.00471 -14.35111 -14.28160 -14.19745 -13.58545 -13.39531 -13.31154 -13.21900 -13.10817 -12.99582 -12.72412 -12.64998 -12.59673 -12.37912 -12.09481 -11.83313 -11.57965 -11.49351 -11.21794 -11.05285 -10.75174 -10.68478 -10.41642 -10.08303 -9.06771 -8.18743 -5.43300 -0.74949 -0.13211 1.26744 1.37689 1.48838 1.66855 1.68222 1.96216 2.41750 2.54656 2.69983 2.82959 3.01502 3.31498 3.42673 3.54267 3.69036 3.82032 3.86205 3.93911 4.08234 4.29642 4.30469 4.38377 4.48053 4.56966 4.59012 4.65827 4.68091 4.68987 4.79458 4.83300 4.87714 5.04454 5.11635 5.18323 5.21091 5.31081 5.46032 5.53385 5.69123 5.90829 6.09611 6.34329 6.76838 6.77507 7.04313 7.54584 8.10961 9.01580 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003599 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.582885 B = 7777.311645 C = 9029.119295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.287 6.287 3 C 0.404 3.596 4 N -0.581 5.581 5 C 0.370 3.630 6 C -0.087 4.087 7 N -0.553 5.553 8 C 0.223 3.777 9 C -0.291 4.291 10 C 0.572 3.428 11 O -0.554 6.554 12 N -0.717 5.717 13 C 0.141 3.859 14 C -0.100 4.100 15 H 0.110 0.890 16 C -0.107 4.107 17 C 0.122 3.878 18 N -0.631 5.631 19 C -0.238 4.238 20 H 0.057 0.943 21 C -0.045 4.045 22 N -0.958 5.958 23 Si 0.952 3.048 24 H -0.268 1.268 25 H -0.313 1.313 26 H -0.262 1.262 27 C 0.117 3.883 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.407 0.593 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.261 0.739 43 H 0.020 0.980 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.814 3.991 -16.798 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.188 6.188 3 C 0.216 3.784 4 N -0.313 5.313 5 C 0.106 3.894 6 C -0.144 4.144 7 N -0.272 5.272 8 C 0.057 3.943 9 C -0.300 4.300 10 C 0.358 3.642 11 O -0.433 6.433 12 N -0.369 5.369 13 C 0.018 3.982 14 C -0.119 4.119 15 H 0.128 0.872 16 C -0.145 4.145 17 C -0.002 4.002 18 N -0.358 5.358 19 C -0.367 4.367 20 H 0.075 0.925 21 C -0.239 4.239 22 N -0.605 5.605 23 Si 0.782 3.218 24 H -0.194 1.194 25 H -0.242 1.242 26 H -0.187 1.187 27 C -0.007 4.007 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.216 0.784 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -21.628 3.715 -16.593 27.512 hybrid contribution 0.603 0.353 0.616 0.931 sum -21.026 4.068 -15.977 26.719 Atomic orbital electron populations 1.23320 0.74863 1.05329 1.03232 1.86500 1.25079 1.22916 1.84313 1.20324 0.88603 0.85747 0.83751 1.68185 1.40797 0.98422 1.23861 1.24099 0.88516 0.93134 0.83697 1.20864 0.98220 0.89575 1.05786 1.68428 1.05950 1.33346 1.19517 1.23787 1.01862 0.85059 0.83569 1.20897 0.92522 0.96912 1.19647 1.17676 0.82247 0.87872 0.76385 1.90801 1.73523 1.28268 1.50753 1.45858 1.05172 1.11082 1.74802 1.21356 0.87693 0.86462 1.02728 1.22408 0.93493 0.99182 0.96789 0.87196 1.22703 0.93626 0.95773 1.02432 1.21879 0.96325 0.92644 0.89343 1.45004 1.14358 1.55116 1.21351 1.18634 1.12315 1.06908 0.98799 0.92491 1.25698 1.01513 1.00798 0.95875 1.70007 1.52912 1.30570 1.06985 0.85832 0.79007 0.78721 0.78238 1.19405 1.24166 1.18728 1.21887 0.86733 0.96158 0.95937 0.85998 0.91453 0.91009 0.87055 0.88114 0.87963 0.78362 0.75617 0.92664 0.88974 0.90920 0.86824 0.93834 0.94442 0.93004 0.96311 0.96212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.41 113.37 1.18 1.63 16 2 O -0.29 -7.70 8.73 -65.33 -0.57 -8.27 16 3 C 0.40 10.67 7.54 85.17 0.64 11.31 16 4 N -0.58 -13.07 9.26 -299.85 -2.78 -15.85 16 5 C 0.37 7.36 7.64 138.73 1.06 8.42 16 6 C -0.09 -0.92 10.31 71.24 0.73 -0.19 16 7 N -0.55 -12.07 10.31 -186.94 -1.93 -14.00 16 8 C 0.22 4.84 10.81 85.02 0.92 5.76 16 9 C -0.29 -7.59 5.92 -19.83 -0.12 -7.71 16 10 C 0.57 16.73 7.78 86.69 0.67 17.40 16 11 O -0.55 -19.89 15.32 16.23 0.25 -19.64 16 12 N -0.72 -18.08 5.39 -466.28 -2.51 -20.59 16 13 C 0.14 3.62 5.00 86.38 0.43 4.05 16 14 C -0.10 -2.69 2.98 -9.60 -0.03 -2.72 16 15 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.11 -2.77 6.54 31.99 0.21 -2.56 16 17 C 0.12 4.38 7.23 86.85 0.63 5.01 16 18 N -0.63 -29.62 3.22 -691.24 -2.22 -31.85 16 19 C -0.24 -13.79 10.56 84.04 0.89 -12.90 16 20 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 21 C -0.04 -2.65 5.43 84.86 0.46 -2.19 16 22 N -0.96 -61.38 13.97 21.65 0.30 -61.08 16 23 Si 0.95 46.19 24.39 68.60 1.67 47.86 16 24 H -0.27 -12.02 6.83 99.48 0.68 -11.34 16 25 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 26 H -0.26 -11.80 6.87 99.48 0.68 -11.12 16 27 C 0.12 4.65 4.55 86.67 0.39 5.04 16 28 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.07 1.05 8.12 -2.39 -0.02 1.04 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 3.18 6.53 -2.91 -0.02 3.16 16 35 H 0.41 8.59 6.53 -92.71 -0.61 7.99 16 36 H 0.05 1.67 8.01 -2.39 -0.02 1.65 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 1.92 8.05 -2.38 -0.02 1.90 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 43 H 0.02 0.79 3.55 -2.39 -0.01 0.78 16 44 H 0.02 0.87 7.73 -2.39 -0.02 0.86 16 Total: -1.00 -80.49 360.35 0.66 -79.83 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.37 Total: 13.23 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 8.08 Total: 30.36 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -9.14 Total: -143.36 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.32 Total: -27.91 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -80.49 0.66 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028582017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.415 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds