Wall clock time and date at job start Tue Mar 31 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.33228 * 126.01738 * 2 1 4 4 C 1.31536 * 109.75702 * 179.82203 * 3 2 1 5 5 O 1.35214 * 125.48698 * 180.17913 * 4 3 2 6 6 N 1.34945 * 109.02102 * 0.44753 * 4 3 2 7 7 H 0.96994 * 126.54947 * 179.71547 * 6 4 3 8 8 C 1.36718 * 126.02229 * 180.31019 * 2 1 3 9 9 C 1.46382 * 126.82304 * 359.97438 * 8 2 1 10 10 O 1.21734 * 119.99999 * 38.18101 * 9 8 2 11 11 N 1.34781 * 120.00119 * 218.17519 * 9 8 2 12 12 C 1.46949 * 120.43974 * 5.73035 * 11 9 8 13 13 C 1.54063 * 108.29331 * 125.71076 * 12 11 9 14 14 H 1.09003 * 110.52424 * 172.27772 * 13 12 11 15 15 C 1.53369 * 108.82866 * 294.51839 * 13 12 11 16 16 C 1.53015 * 109.25804 * 60.26921 * 15 13 12 17 17 C 1.53014 * 109.79444 * 60.57485 * 16 15 13 18 18 C 1.53372 * 109.27014 * 299.43230 * 17 16 15 19 19 H 1.08994 * 111.08179 * 177.80700 * 18 17 16 20 20 C 1.46945 * 120.44199 * 185.99542 * 11 9 8 21 21 N 1.47564 * 107.98473 * 56.35386 * 18 17 16 22 22 C 1.36938 * 121.61466 * 122.25237 * 21 18 17 23 23 H 1.08002 * 119.99544 * 28.09290 * 22 21 18 24 24 C 1.38811 * 120.00342 * 208.09676 * 22 21 18 25 25 N 1.31621 * 119.99813 * 17.55948 * 24 22 21 26 26 Si 1.86793 * 119.99934 * 197.55632 * 24 22 21 27 27 H 1.48499 * 109.47331 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47140 * 120.00116 * 26 24 22 29 29 H 1.48505 * 109.47268 * 240.00125 * 26 24 22 30 30 H 1.09005 * 109.47168 * 269.68859 * 1 2 3 31 31 H 1.08995 * 109.47439 * 29.69070 * 1 2 3 32 32 H 1.08999 * 109.47106 * 149.68870 * 1 2 3 33 33 H 0.96698 * 113.99607 * 270.30830 * 5 4 3 34 34 H 1.09001 * 109.61570 * 245.47470 * 12 11 9 35 35 H 1.08996 * 109.62695 * 6.03409 * 12 11 9 36 36 H 1.08997 * 109.50777 * 180.19991 * 15 13 12 37 37 H 1.09002 * 109.51006 * 300.28774 * 15 13 12 38 38 H 1.08992 * 109.41842 * 180.67767 * 16 15 13 39 39 H 1.09003 * 109.41324 * 300.54702 * 16 15 13 40 40 H 1.09001 * 109.50165 * 179.49274 * 17 16 15 41 41 H 1.08996 * 109.50281 * 59.37458 * 17 16 15 42 42 H 1.08999 * 109.62970 * 353.97134 * 20 11 9 43 43 H 1.09002 * 109.62181 * 114.54475 * 20 11 9 44 44 H 0.97000 * 119.99920 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5531 0.7093 0.0038 5 8 4.6149 1.5465 0.0084 6 7 3.6181 -0.6386 -0.0035 7 1 4.4242 -1.1779 -0.0066 8 6 2.3109 -1.1057 -0.0060 9 6 1.8792 -2.5044 -0.0130 10 8 0.9076 -2.8382 -0.6661 11 7 2.5574 -3.4227 0.7034 12 6 3.6530 -3.0124 1.5927 13 6 3.3654 -3.5658 3.0014 14 1 4.2191 -3.4003 3.6587 15 6 2.1053 -2.8867 3.5522 16 6 0.9238 -3.1901 2.6284 17 6 0.6880 -4.7008 2.5678 18 6 1.9426 -5.3871 2.0135 19 1 1.8207 -6.4700 1.9937 20 6 2.2150 -4.8481 0.6013 21 7 3.0844 -5.0083 2.8681 22 6 3.8461 -5.9499 3.5071 23 1 3.9472 -6.9393 3.0858 24 6 4.4883 -5.6330 4.6962 25 7 4.1087 -4.5800 5.3887 26 14 5.8911 -6.7008 5.3135 27 1 6.1216 -7.8154 4.3597 28 1 7.1246 -5.8815 5.4257 29 1 5.5420 -7.2548 6.6464 30 1 -0.3634 -0.0056 1.0277 31 1 -0.3634 0.8927 -0.5090 32 1 -0.3633 -0.8872 -0.5187 33 1 4.9237 1.7947 -0.8736 34 1 4.5954 -3.4165 1.2228 35 1 3.7072 -1.9244 1.6290 36 1 1.8935 -3.2680 4.5511 37 1 2.2636 -1.8093 3.5998 38 1 0.0293 -2.6988 3.0109 39 1 1.1417 -2.8180 1.6273 40 1 -0.1600 -4.9108 1.9159 41 1 0.4797 -5.0770 3.5694 42 1 1.3235 -4.9673 -0.0144 43 1 3.0469 -5.3933 0.1555 44 1 4.5577 -4.3583 6.2195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039661356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:16 Heat of formation + Delta-G solvation = 45.334301 kcal Electronic energy + Delta-G solvation = -29427.551400 eV Core-core repulsion = 25576.319790 eV Total energy + Delta-G solvation = -3851.231610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42897 -40.40585 -37.90735 -37.36421 -34.33078 -33.31981 -32.70850 -32.01058 -30.67973 -30.38111 -27.71486 -26.35729 -25.65757 -23.89112 -22.64475 -21.81494 -21.49438 -20.70567 -19.84353 -19.03249 -18.26770 -17.80849 -16.62374 -16.08284 -15.85113 -15.82189 -14.79294 -14.70919 -14.09759 -14.03100 -13.70606 -13.58404 -13.31559 -13.06546 -12.91987 -12.68717 -12.48486 -12.44607 -12.17191 -11.99074 -11.87273 -11.46142 -11.26185 -11.02136 -10.78488 -10.40766 -10.33914 -10.23069 -10.18501 -10.06826 -9.99580 -9.80991 -9.48238 -9.40157 -8.61382 -8.42271 -7.99443 -6.71685 -5.91908 -3.35975 1.26833 2.20528 2.72268 3.06396 3.27891 3.36156 3.38036 3.39318 3.78274 4.36603 4.62449 4.85339 5.02270 5.10723 5.23480 5.56988 5.57612 5.64597 5.67639 5.79111 5.80574 5.84081 5.89745 5.92696 5.99315 6.04106 6.12498 6.28724 6.35284 6.41702 6.42494 6.56506 6.60193 6.66561 6.82647 6.96695 7.02640 7.03625 7.36431 7.42917 7.48441 7.62752 7.69460 7.77509 8.26997 8.29050 9.03720 9.65673 10.27514 11.14911 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.004878 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.325171 B = 5738.550493 C = 6545.053924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.098 3.902 3 N -0.486 5.486 4 C 0.399 3.601 5 O -0.440 6.440 6 N -0.551 5.551 7 H 0.425 0.575 8 C -0.064 4.064 9 C 0.594 3.406 10 O -0.535 6.535 11 N -0.584 5.584 12 C 0.074 3.926 13 C 0.181 3.819 14 H 0.117 0.883 15 C -0.113 4.113 16 C -0.137 4.137 17 C -0.121 4.121 18 C 0.151 3.849 19 H 0.080 0.920 20 C 0.102 3.898 21 N -0.578 5.578 22 C -0.251 4.251 23 H 0.069 0.931 24 C 0.005 3.995 25 N -0.896 5.896 26 Si 0.902 3.098 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.290 1.290 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.403 0.597 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 7.375 -10.991 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 N -0.217 5.217 4 C 0.098 3.902 5 O -0.241 6.241 6 N -0.170 5.170 7 H 0.265 0.735 8 C -0.179 4.179 9 C 0.383 3.617 10 O -0.413 6.413 11 N -0.316 5.316 12 C -0.050 4.050 13 C 0.074 3.926 14 H 0.134 0.866 15 C -0.152 4.152 16 C -0.175 4.175 17 C -0.160 4.160 18 C 0.043 3.957 19 H 0.098 0.902 20 C -0.022 4.022 21 N -0.299 5.299 22 C -0.381 4.381 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.540 5.540 26 Si 0.732 3.268 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.260 0.740 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.534 8.029 -10.556 13.351 hybrid contribution 1.879 -1.325 0.200 2.308 sum 0.345 6.704 -10.356 12.341 Atomic orbital electron populations 1.20311 0.86320 1.04001 1.03210 1.20793 0.96660 0.85882 1.00232 1.70213 0.98587 1.30368 1.22532 1.20144 0.87358 0.78739 1.03932 1.84875 1.43412 1.61605 1.34168 1.43984 1.08856 1.07800 1.56403 0.73456 1.20812 0.83029 0.95525 1.18554 1.16539 0.83292 0.82558 0.79338 1.90815 1.26760 1.79463 1.44278 1.48152 1.34210 1.07522 1.41742 1.23001 0.88628 0.98802 0.94566 1.21171 0.98142 0.83336 0.89983 0.86587 1.21797 0.95717 0.97328 1.00352 1.22082 0.97544 0.96307 1.01606 1.21901 0.97264 0.96184 1.00624 1.21252 0.88263 0.97321 0.88843 0.90225 1.22312 1.00787 0.79053 1.00018 1.44419 1.29855 1.01404 1.54207 1.19190 1.22732 0.94580 1.01556 0.91366 1.25040 1.00819 0.98265 0.95290 1.69980 1.40840 1.28502 1.14664 0.86237 0.82240 0.79868 0.78477 1.20287 1.21607 1.21722 0.90642 0.90687 0.89144 0.73990 0.91745 0.91355 0.90621 0.94858 0.94860 0.90527 0.93755 0.92349 0.89606 0.91739 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.22 36.00 0.37 -0.70 16 2 C 0.10 1.49 7.13 -82.54 -0.59 0.90 16 3 N -0.49 -7.31 11.22 -10.83 -0.12 -7.43 16 4 C 0.40 5.13 9.43 -89.59 -0.84 4.29 16 5 O -0.44 -4.31 13.62 -17.34 -0.24 -4.55 16 6 N -0.55 -6.89 4.78 -10.90 -0.05 -6.94 16 7 H 0.42 4.39 7.79 -40.82 -0.32 4.08 16 8 C -0.06 -0.97 5.93 -81.98 -0.49 -1.46 16 9 C 0.59 9.96 4.80 -12.98 -0.06 9.90 16 10 O -0.54 -9.92 14.89 5.16 0.08 -9.85 16 11 N -0.58 -9.81 1.64 -173.60 -0.28 -10.10 16 12 C 0.07 1.27 5.09 -3.24 -0.02 1.25 16 13 C 0.18 3.83 2.66 -66.60 -0.18 3.65 16 14 H 0.12 2.81 5.88 -51.93 -0.31 2.50 16 15 C -0.11 -2.36 5.56 -26.53 -0.15 -2.50 16 16 C -0.14 -2.64 5.55 -26.72 -0.15 -2.78 16 17 C -0.12 -2.31 5.58 -26.53 -0.15 -2.46 16 18 C 0.15 2.93 3.62 -66.85 -0.24 2.69 16 19 H 0.08 1.51 8.01 -51.93 -0.42 1.10 16 20 C 0.10 1.74 5.89 -3.49 -0.02 1.72 16 21 N -0.58 -12.92 2.53 -155.16 -0.39 -13.31 16 22 C -0.25 -6.27 9.71 -15.06 -0.15 -6.42 16 23 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 24 C 0.00 0.12 4.99 -17.43 -0.09 0.04 16 25 N -0.90 -23.85 10.94 55.49 0.61 -23.24 16 26 Si 0.90 20.36 29.59 -169.99 -5.03 15.33 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.25 6.62 -51.93 -0.34 0.91 16 33 H 0.40 1.65 9.06 45.56 0.41 2.07 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.08 4.93 -51.93 -0.26 0.82 16 36 H 0.08 1.82 7.96 -51.93 -0.41 1.41 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.43 2.48 -52.49 -0.13 1.30 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.43 6.98 -51.93 -0.36 1.07 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -30.36 337.75 -8.15 -38.51 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.06 Total: 8.36 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -2.75 Total: 8.12 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.24 Total: -61.02 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.16 Total: -14.40 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.36 -8.15 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039661356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.847 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds