Wall clock time and date at job start Tue Mar 31 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.33228 * 126.01738 * 2 1 4 4 C 1.31536 * 109.75702 * 179.82203 * 3 2 1 5 5 O 1.35214 * 125.48698 * 180.17913 * 4 3 2 6 6 N 1.34945 * 109.02102 * 0.44753 * 4 3 2 7 7 H 0.96994 * 126.54947 * 179.71547 * 6 4 3 8 8 C 1.36718 * 126.02229 * 180.31019 * 2 1 3 9 9 C 1.46382 * 126.82304 * 359.97438 * 8 2 1 10 10 O 1.21734 * 119.99999 * 38.18101 * 9 8 2 11 11 N 1.34781 * 120.00119 * 218.17519 * 9 8 2 12 12 C 1.46949 * 120.43974 * 5.73035 * 11 9 8 13 13 C 1.54063 * 108.29331 * 125.71076 * 12 11 9 14 14 H 1.09003 * 110.52424 * 172.27772 * 13 12 11 15 15 C 1.53369 * 108.82866 * 294.51839 * 13 12 11 16 16 C 1.53015 * 109.25804 * 60.26921 * 15 13 12 17 17 C 1.53014 * 109.79444 * 60.57485 * 16 15 13 18 18 C 1.53372 * 109.27014 * 299.43230 * 17 16 15 19 19 H 1.08994 * 111.08179 * 177.80700 * 18 17 16 20 20 C 1.46945 * 120.44199 * 185.99542 * 11 9 8 21 21 N 1.47564 * 107.98473 * 56.35386 * 18 17 16 22 22 C 1.36938 * 121.61466 * 122.25237 * 21 18 17 23 23 H 1.08002 * 119.99544 * 28.09290 * 22 21 18 24 24 C 1.38811 * 120.00342 * 208.09676 * 22 21 18 25 25 N 1.31621 * 119.99813 * 17.55948 * 24 22 21 26 26 Si 1.86793 * 119.99934 * 197.55632 * 24 22 21 27 27 H 1.48499 * 109.47331 * 359.97438 * 26 24 22 28 28 H 1.48508 * 109.47140 * 120.00116 * 26 24 22 29 29 H 1.48505 * 109.47268 * 240.00125 * 26 24 22 30 30 H 1.09005 * 109.47168 * 269.68859 * 1 2 3 31 31 H 1.08995 * 109.47439 * 29.69070 * 1 2 3 32 32 H 1.08999 * 109.47106 * 149.68870 * 1 2 3 33 33 H 0.96698 * 113.99607 * 270.30830 * 5 4 3 34 34 H 1.09001 * 109.61570 * 245.47470 * 12 11 9 35 35 H 1.08996 * 109.62695 * 6.03409 * 12 11 9 36 36 H 1.08997 * 109.50777 * 180.19991 * 15 13 12 37 37 H 1.09002 * 109.51006 * 300.28774 * 15 13 12 38 38 H 1.08992 * 109.41842 * 180.67767 * 16 15 13 39 39 H 1.09003 * 109.41324 * 300.54702 * 16 15 13 40 40 H 1.09001 * 109.50165 * 179.49274 * 17 16 15 41 41 H 1.08996 * 109.50281 * 59.37458 * 17 16 15 42 42 H 1.08999 * 109.62970 * 353.97134 * 20 11 9 43 43 H 1.09002 * 109.62181 * 114.54475 * 20 11 9 44 44 H 0.97000 * 119.99920 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2903 1.0776 0.0000 4 6 3.5531 0.7093 0.0038 5 8 4.6149 1.5465 0.0084 6 7 3.6181 -0.6386 -0.0035 7 1 4.4242 -1.1779 -0.0066 8 6 2.3109 -1.1057 -0.0060 9 6 1.8792 -2.5044 -0.0130 10 8 0.9076 -2.8382 -0.6661 11 7 2.5574 -3.4227 0.7034 12 6 3.6530 -3.0124 1.5927 13 6 3.3654 -3.5658 3.0014 14 1 4.2191 -3.4003 3.6587 15 6 2.1053 -2.8867 3.5522 16 6 0.9238 -3.1901 2.6284 17 6 0.6880 -4.7008 2.5678 18 6 1.9426 -5.3871 2.0135 19 1 1.8207 -6.4700 1.9937 20 6 2.2150 -4.8481 0.6013 21 7 3.0844 -5.0083 2.8681 22 6 3.8461 -5.9499 3.5071 23 1 3.9472 -6.9393 3.0858 24 6 4.4883 -5.6330 4.6962 25 7 4.1087 -4.5800 5.3887 26 14 5.8911 -6.7008 5.3135 27 1 6.1216 -7.8154 4.3597 28 1 7.1246 -5.8815 5.4257 29 1 5.5420 -7.2548 6.6464 30 1 -0.3634 -0.0056 1.0277 31 1 -0.3634 0.8927 -0.5090 32 1 -0.3633 -0.8872 -0.5187 33 1 4.9237 1.7947 -0.8736 34 1 4.5954 -3.4165 1.2228 35 1 3.7072 -1.9244 1.6290 36 1 1.8935 -3.2680 4.5511 37 1 2.2636 -1.8093 3.5998 38 1 0.0293 -2.6988 3.0109 39 1 1.1417 -2.8180 1.6273 40 1 -0.1600 -4.9108 1.9159 41 1 0.4797 -5.0770 3.5694 42 1 1.3235 -4.9673 -0.0144 43 1 3.0469 -5.3933 0.1555 44 1 4.5577 -4.3583 6.2195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039661356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:15 Heat of formation + Delta-G solvation = 23.384746 kcal Electronic energy + Delta-G solvation = -29428.503205 eV Core-core repulsion = 25576.319790 eV Total energy + Delta-G solvation = -3852.183414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.51859 -41.80432 -39.25327 -38.33196 -35.79428 -34.80978 -34.06901 -33.54372 -32.17717 -31.76719 -29.07298 -27.75230 -27.12376 -25.51932 -23.88729 -23.14228 -23.08504 -22.04047 -20.93693 -20.28473 -19.79871 -19.01727 -18.01684 -17.30830 -17.17360 -17.08394 -16.48408 -16.16108 -15.71469 -15.31442 -15.08765 -14.98772 -14.70405 -14.57760 -14.20387 -14.12428 -13.70627 -13.68735 -13.42679 -13.34835 -13.09700 -13.07900 -12.94707 -12.64260 -12.47636 -12.09564 -11.98787 -11.76604 -11.68977 -11.49209 -11.24562 -11.13015 -11.08329 -10.94016 -10.47333 -9.62810 -9.39414 -8.49079 -7.83086 -5.28964 0.17733 1.20432 1.46907 1.51852 1.59534 1.63458 1.80481 2.13255 2.52570 2.83133 3.30084 3.43253 3.49628 3.85068 4.01967 4.07149 4.13883 4.17475 4.23182 4.29349 4.41463 4.51385 4.61125 4.65539 4.78605 4.80696 4.81582 4.87187 4.94561 4.96931 5.02262 5.09918 5.22886 5.34631 5.38556 5.45780 5.50102 5.65338 5.70613 5.77943 5.80944 6.29621 6.40003 6.64986 6.70257 6.96814 7.15261 7.82322 8.41452 9.20445 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.004878 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.325171 B = 5738.550493 C = 6545.053924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.093 3.907 3 N -0.512 5.512 4 C 0.418 3.582 5 O -0.440 6.440 6 N -0.542 5.542 7 H 0.435 0.565 8 C -0.087 4.087 9 C 0.600 3.400 10 O -0.552 6.552 11 N -0.585 5.585 12 C 0.091 3.909 13 C 0.178 3.822 14 H 0.084 0.916 15 C -0.103 4.103 16 C -0.133 4.133 17 C -0.116 4.116 18 C 0.146 3.854 19 H 0.081 0.919 20 C 0.111 3.889 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.069 0.931 24 C -0.042 4.042 25 N -0.922 5.922 26 Si 0.959 3.041 27 H -0.269 1.269 28 H -0.292 1.292 29 H -0.301 1.301 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.430 0.570 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 8.035 -12.858 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.041 4.041 3 N -0.244 5.244 4 C 0.117 3.883 5 O -0.244 6.244 6 N -0.162 5.162 7 H 0.278 0.722 8 C -0.202 4.202 9 C 0.390 3.610 10 O -0.431 6.431 11 N -0.317 5.317 12 C -0.033 4.033 13 C 0.071 3.929 14 H 0.102 0.898 15 C -0.143 4.143 16 C -0.171 4.171 17 C -0.155 4.155 18 C 0.039 3.961 19 H 0.099 0.901 20 C -0.013 4.013 21 N -0.312 5.312 22 C -0.384 4.384 23 H 0.086 0.914 24 C -0.238 4.238 25 N -0.568 5.568 26 Si 0.789 3.211 27 H -0.193 1.193 28 H -0.219 1.219 29 H -0.228 1.228 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.293 0.707 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.938 8.688 -12.474 15.231 hybrid contribution 1.699 -1.451 0.762 2.361 sum 0.762 7.237 -11.712 13.789 Atomic orbital electron populations 1.20339 0.85532 1.04403 1.03474 1.21117 0.97485 0.85995 0.99474 1.70235 0.99529 1.30563 1.24088 1.20232 0.87583 0.79042 1.01480 1.84841 1.42201 1.60771 1.36631 1.43856 1.08464 1.07842 1.56068 0.72235 1.20535 0.84183 0.94640 1.20816 1.16642 0.82693 0.82964 0.78696 1.90807 1.27489 1.79934 1.44908 1.48112 1.34217 1.07520 1.41834 1.22726 0.89145 0.99512 0.91955 1.21047 0.96855 0.83114 0.91886 0.89800 1.21648 0.96680 0.97337 0.98589 1.22072 0.96890 0.96417 1.01734 1.21845 0.98074 0.96026 0.99592 1.21406 0.87293 0.97721 0.89705 0.90056 1.22175 1.01667 0.79255 0.98182 1.44579 1.30765 1.01546 1.54338 1.19444 1.22508 0.95028 1.01374 0.91380 1.25635 1.02875 0.99504 0.95773 1.70136 1.41807 1.30038 1.14819 0.85332 0.79725 0.78633 0.77406 1.19324 1.21880 1.22822 0.90356 0.89132 0.89893 0.70738 0.90540 0.89822 0.94646 0.94323 0.94445 0.89280 0.91646 0.94946 0.88685 0.90691 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.22 71.23 0.73 -1.25 16 2 C 0.09 2.66 7.13 41.99 0.30 2.96 16 3 N -0.51 -14.26 11.22 -301.67 -3.39 -17.65 16 4 C 0.42 9.60 9.43 179.99 1.70 11.30 16 5 O -0.44 -7.17 13.62 -84.96 -1.16 -8.33 16 6 N -0.54 -12.12 4.78 -300.12 -1.43 -13.56 16 7 H 0.43 7.72 7.79 -92.71 -0.72 7.00 16 8 C -0.09 -2.44 5.93 39.80 0.24 -2.20 16 9 C 0.60 18.84 4.80 86.36 0.41 19.26 16 10 O -0.55 -19.34 14.89 -4.46 -0.07 -19.41 16 11 N -0.59 -18.46 1.64 -821.33 -1.34 -19.81 16 12 C 0.09 2.96 5.09 86.65 0.44 3.40 16 13 C 0.18 7.53 2.66 45.27 0.12 7.65 16 14 H 0.08 4.14 5.88 -2.39 -0.01 4.13 16 15 C -0.10 -4.36 5.56 30.72 0.17 -4.19 16 16 C -0.13 -5.02 5.55 30.60 0.17 -4.85 16 17 C -0.12 -4.39 5.58 30.72 0.17 -4.22 16 18 C 0.15 5.52 3.62 45.11 0.16 5.68 16 19 H 0.08 3.02 8.01 -2.39 -0.02 3.00 16 20 C 0.11 3.56 5.89 86.49 0.51 4.07 16 21 N -0.59 -26.35 2.53 -644.79 -1.63 -27.99 16 22 C -0.25 -12.68 9.71 84.03 0.82 -11.86 16 23 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 24 C -0.04 -2.15 4.99 84.86 0.42 -1.73 16 25 N -0.92 -50.50 10.94 21.65 0.24 -50.27 16 26 Si 0.96 42.33 29.59 68.60 2.03 44.36 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 29 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.17 6.62 -2.39 -0.02 2.16 16 33 H 0.43 1.94 9.06 -74.06 -0.67 1.27 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.47 4.93 -2.39 -0.01 2.46 16 36 H 0.03 1.76 7.96 -2.39 -0.02 1.74 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 3.18 2.48 -3.49 -0.01 3.17 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.93 6.98 -2.39 -0.02 2.91 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -65.22 337.75 -0.72 -65.94 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.33 Total: 22.70 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 6.36 Total: 24.01 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -7.56 Total: -129.27 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.22 Total: -27.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.22 -0.72 -65.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039661356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.323 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds