Wall clock time and date at job start Tue Mar 31 2020 04:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33226 * 126.01829 * 2 1 4 4 C 1.31540 * 109.76242 * 180.02562 * 3 2 1 5 5 O 1.35201 * 125.49326 * 180.02562 * 4 3 2 6 6 N 1.34947 * 109.01202 * 359.72652 * 4 3 2 7 7 H 0.97001 * 126.54478 * 180.30665 * 6 4 3 8 8 C 1.36721 * 126.01909 * 180.02562 * 2 1 3 9 9 C 1.46380 * 126.82613 * 359.97438 * 8 2 1 10 10 O 1.21736 * 119.99917 * 353.75900 * 9 8 2 11 11 N 1.34773 * 119.99927 * 173.74745 * 9 8 2 12 12 C 1.47561 * 125.67541 * 354.52018 * 11 9 8 13 13 C 1.55188 * 105.00544 * 203.83563 * 12 11 9 14 14 C 1.53713 * 101.44418 * 324.53103 * 13 12 11 15 15 C 1.53650 * 111.46845 * 154.97133 * 14 13 12 16 16 C 1.55185 * 101.41684 * 155.06518 * 15 14 13 17 17 N 1.47566 * 105.00520 * 324.49605 * 16 15 14 18 18 C 1.36933 * 125.67640 * 203.85929 * 17 16 15 19 19 H 1.07999 * 120.00010 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00050 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00053 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47295 * 119.99891 * 22 20 18 25 25 H 1.48497 * 109.47038 * 240.00177 * 22 20 18 26 26 C 1.47410 * 108.64596 * 23.86136 * 17 16 15 27 27 C 1.47407 * 125.67320 * 174.48852 * 11 9 8 28 28 H 1.08999 * 109.47194 * 269.97320 * 1 2 3 29 29 H 1.08996 * 109.47330 * 29.97551 * 1 2 3 30 30 H 1.09000 * 109.46964 * 149.97684 * 1 2 3 31 31 H 0.96699 * 113.99809 * 89.97169 * 5 4 3 32 32 H 1.08994 * 110.33212 * 322.71694 * 12 11 9 33 33 H 1.09002 * 110.33499 * 84.85470 * 12 11 9 34 34 H 1.09000 * 111.03223 * 82.54738 * 13 12 11 35 35 H 1.09004 * 111.03073 * 206.43113 * 13 12 11 36 36 H 1.09008 * 111.03523 * 273.09510 * 15 14 13 37 37 H 1.08994 * 111.03960 * 37.02743 * 15 14 13 38 38 H 1.09001 * 110.33419 * 205.61780 * 16 15 14 39 39 H 1.08999 * 110.42825 * 83.42402 * 16 15 14 40 40 H 0.97003 * 120.00477 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.98159 * 238.54502 * 26 17 16 42 42 H 1.08999 * 109.98030 * 117.24632 * 26 17 16 43 43 H 1.08998 * 109.98619 * 297.25069 * 27 11 9 44 44 H 1.09001 * 109.98301 * 58.52215 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0006 5 8 4.6150 1.5464 -0.0002 6 7 3.6181 -0.6385 0.0052 7 1 4.4243 -1.1780 0.0103 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0006 10 8 0.6983 -2.7770 0.1144 11 7 2.7890 -3.4906 -0.1282 12 6 4.2295 -3.3040 -0.3886 13 6 4.6950 -4.6325 -1.0419 14 6 3.8301 -5.6597 -0.2939 15 6 3.6270 -6.9357 -1.1254 16 6 3.3518 -7.9850 -0.0156 17 7 4.2094 -7.5795 1.1147 18 6 4.6610 -8.4039 2.1104 19 1 5.2871 -8.0084 2.8965 20 6 4.3149 -9.7482 2.1088 21 7 3.5523 -10.2302 1.1505 22 14 4.9304 -10.8727 3.4675 23 1 5.7634 -10.0918 4.4170 24 1 3.7717 -11.4569 4.1896 25 1 5.7460 -11.9635 2.8758 26 6 4.4989 -6.1392 0.9936 27 6 2.5108 -4.9348 -0.0302 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.9237 1.7896 0.8833 32 1 4.3857 -2.4703 -1.0731 33 1 4.7641 -3.1318 0.5455 34 1 4.4763 -4.6411 -2.1097 35 1 5.7556 -4.8069 -0.8606 36 1 2.7697 -6.8366 -1.7913 37 1 4.5283 -7.1855 -1.6851 38 1 3.6261 -8.9819 -0.3605 39 1 2.3023 -7.9619 0.2779 40 1 3.3108 -11.1697 1.1491 41 1 5.5756 -5.9792 0.9361 42 1 4.0876 -5.6034 1.8491 43 1 2.1458 -5.1770 0.9678 44 1 1.7715 -5.2233 -0.7774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041383804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:52 Heat of formation + Delta-G solvation = 28.478335 kcal Electronic energy + Delta-G solvation = -27473.258368 eV Core-core repulsion = 23621.295828 eV Total energy + Delta-G solvation = -3851.962540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60588 -40.27074 -38.50352 -37.67604 -35.93849 -33.74165 -32.68119 -31.06104 -30.68741 -29.51323 -28.27771 -27.36694 -25.65699 -24.44251 -23.01758 -22.39861 -21.44705 -20.35985 -20.13860 -19.04792 -18.79229 -17.58749 -16.92853 -16.64530 -16.22740 -16.04322 -15.45349 -14.92321 -14.63551 -14.28160 -13.94988 -13.59399 -13.48287 -13.37762 -13.12709 -12.84727 -12.70269 -12.53587 -12.34059 -12.20707 -12.11097 -11.60215 -11.55206 -11.41476 -10.97772 -10.87282 -10.59502 -10.37680 -10.32794 -10.13022 -10.07270 -10.00115 -9.84853 -9.57509 -8.92131 -8.70700 -8.53595 -6.90376 -5.71172 -3.13141 0.89883 2.03183 2.39966 2.79782 3.10234 3.35829 3.41298 3.43856 3.50689 4.23249 4.35342 4.45032 4.50685 4.72003 4.77166 4.86204 5.06226 5.10952 5.27470 5.27898 5.44638 5.64644 5.65222 5.66719 5.73105 5.79947 5.81502 5.83689 6.04857 6.08814 6.13557 6.22094 6.23458 6.32798 6.44077 6.50714 6.62019 6.70360 7.16615 7.30919 7.45139 7.50315 7.56020 7.79292 7.97365 8.29307 9.15585 9.76219 10.40583 11.32824 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.002875 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.881638 B = 9738.137834 C =10025.502870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.112 3.888 3 N -0.488 5.488 4 C 0.406 3.594 5 O -0.441 6.441 6 N -0.558 5.558 7 H 0.424 0.576 8 C -0.075 4.075 9 C 0.608 3.392 10 O -0.519 6.519 11 N -0.615 5.615 12 C 0.086 3.914 13 C -0.114 4.114 14 C -0.082 4.082 15 C -0.130 4.130 16 C 0.151 3.849 17 N -0.604 5.604 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.151 3.849 27 C 0.130 3.870 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.407 0.593 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.014 0.986 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.021 0.979 43 H 0.078 0.922 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 19.424 -4.713 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 N -0.220 5.220 4 C 0.105 3.895 5 O -0.243 6.243 6 N -0.180 5.180 7 H 0.268 0.732 8 C -0.189 4.189 9 C 0.396 3.604 10 O -0.395 6.395 11 N -0.349 5.349 12 C -0.037 4.037 13 C -0.152 4.152 14 C -0.083 4.083 15 C -0.169 4.169 16 C 0.026 3.974 17 N -0.330 5.330 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.025 3.975 27 C 0.009 3.991 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.265 0.735 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.161 19.942 -5.150 20.629 hybrid contribution 1.478 -1.410 1.280 2.410 sum 2.639 18.533 -3.870 19.116 Atomic orbital electron populations 1.20325 0.85822 1.03814 1.03476 1.20945 0.96914 0.85757 0.98676 1.70277 0.98610 1.30415 1.22652 1.20207 0.87436 0.78850 1.03044 1.84835 1.43304 1.61622 1.34515 1.44300 1.09161 1.07973 1.56606 0.73227 1.20807 0.82911 0.95129 1.20076 1.16275 0.84974 0.81748 0.77355 1.90863 1.15532 1.82445 1.50698 1.48586 1.08094 1.07362 1.70883 1.22624 0.81754 0.99627 0.99745 1.22666 1.00591 0.92100 0.99827 1.21576 0.93695 0.95296 0.97761 1.22881 1.00856 0.94826 0.98345 1.22011 0.92868 0.97886 0.84586 1.44632 1.58293 1.02414 1.27647 1.19095 1.25111 0.89474 1.01573 0.90495 1.24785 0.99989 0.96971 0.98803 1.69801 1.40555 1.13394 1.33148 0.86009 0.77926 0.80706 0.80900 1.20563 1.21697 1.21717 1.21143 0.96394 0.87247 0.92680 1.21933 0.97319 0.76956 1.02895 0.90265 0.90829 0.89094 0.73514 0.91379 0.91025 0.90220 0.89164 0.91895 0.91476 0.87587 0.96784 0.93709 0.95514 0.96085 0.90415 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.81 36.00 0.35 -0.50 16 2 C 0.11 1.43 7.14 -82.54 -0.59 0.84 16 3 N -0.49 -6.20 11.22 -10.83 -0.12 -6.32 16 4 C 0.41 4.19 9.43 -89.59 -0.84 3.34 16 5 O -0.44 -3.23 13.62 -17.30 -0.24 -3.47 16 6 N -0.56 -5.41 5.47 -10.90 -0.06 -5.47 16 7 H 0.42 3.09 5.54 -40.82 -0.23 2.86 16 8 C -0.07 -0.94 6.82 -81.97 -0.56 -1.50 16 9 C 0.61 8.86 7.80 -12.99 -0.10 8.76 16 10 O -0.52 -8.96 15.22 5.16 0.08 -8.89 16 11 N -0.62 -8.29 3.34 -172.50 -0.58 -8.86 16 12 C 0.09 0.87 5.24 -2.30 -0.01 0.85 16 13 C -0.11 -1.28 6.04 -25.20 -0.15 -1.43 16 14 C -0.08 -1.27 0.60 -153.99 -0.09 -1.36 16 15 C -0.13 -2.24 6.04 -25.24 -0.15 -2.39 16 16 C 0.15 3.49 5.85 -2.30 -0.01 3.47 16 17 N -0.60 -14.72 3.41 -170.40 -0.58 -15.30 16 18 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.15 2.89 6.40 -3.64 -0.02 2.86 16 27 C 0.13 2.03 6.03 -3.64 -0.02 2.01 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.09 6.61 -51.93 -0.34 0.74 16 31 H 0.41 0.80 9.06 45.56 0.41 1.22 16 32 H 0.07 0.56 6.23 -51.93 -0.32 0.23 16 33 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 34 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.09 0.93 7.62 -51.93 -0.40 0.54 16 36 H 0.06 0.98 7.62 -51.92 -0.40 0.58 16 37 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 38 H 0.11 2.78 5.89 -51.93 -0.31 2.48 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.02 0.42 7.61 -51.93 -0.39 0.02 16 43 H 0.08 1.39 7.60 -51.93 -0.39 0.99 16 44 H 0.07 1.18 7.53 -51.93 -0.39 0.79 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -33.69 349.63 -8.36 -42.05 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.21 Total: 1.66 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -2.46 Total: 8.39 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.78 Total: -61.63 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.16 Total: -12.35 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.69 -8.36 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.527 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds