Wall clock time and date at job start Tue Mar 31 2020 04:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33226 * 126.01829 * 2 1 4 4 C 1.31540 * 109.76242 * 180.02562 * 3 2 1 5 5 O 1.35201 * 125.49326 * 180.02562 * 4 3 2 6 6 N 1.34947 * 109.01202 * 359.72652 * 4 3 2 7 7 H 0.97001 * 126.54478 * 180.30665 * 6 4 3 8 8 C 1.36721 * 126.01909 * 180.02562 * 2 1 3 9 9 C 1.46380 * 126.82613 * 359.97438 * 8 2 1 10 10 O 1.21736 * 119.99917 * 353.75900 * 9 8 2 11 11 N 1.34773 * 119.99927 * 173.74745 * 9 8 2 12 12 C 1.47561 * 125.67541 * 354.52018 * 11 9 8 13 13 C 1.55188 * 105.00544 * 203.83563 * 12 11 9 14 14 C 1.53713 * 101.44418 * 324.53103 * 13 12 11 15 15 C 1.53650 * 111.46845 * 154.97133 * 14 13 12 16 16 C 1.55185 * 101.41684 * 155.06518 * 15 14 13 17 17 N 1.47566 * 105.00520 * 324.49605 * 16 15 14 18 18 C 1.36933 * 125.67640 * 203.85929 * 17 16 15 19 19 H 1.07999 * 120.00010 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00050 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00053 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46896 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47295 * 119.99891 * 22 20 18 25 25 H 1.48497 * 109.47038 * 240.00177 * 22 20 18 26 26 C 1.47410 * 108.64596 * 23.86136 * 17 16 15 27 27 C 1.47407 * 125.67320 * 174.48852 * 11 9 8 28 28 H 1.08999 * 109.47194 * 269.97320 * 1 2 3 29 29 H 1.08996 * 109.47330 * 29.97551 * 1 2 3 30 30 H 1.09000 * 109.46964 * 149.97684 * 1 2 3 31 31 H 0.96699 * 113.99809 * 89.97169 * 5 4 3 32 32 H 1.08994 * 110.33212 * 322.71694 * 12 11 9 33 33 H 1.09002 * 110.33499 * 84.85470 * 12 11 9 34 34 H 1.09000 * 111.03223 * 82.54738 * 13 12 11 35 35 H 1.09004 * 111.03073 * 206.43113 * 13 12 11 36 36 H 1.09008 * 111.03523 * 273.09510 * 15 14 13 37 37 H 1.08994 * 111.03960 * 37.02743 * 15 14 13 38 38 H 1.09001 * 110.33419 * 205.61780 * 16 15 14 39 39 H 1.08999 * 110.42825 * 83.42402 * 16 15 14 40 40 H 0.97003 * 120.00477 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.98159 * 238.54502 * 26 17 16 42 42 H 1.08999 * 109.98030 * 117.24632 * 26 17 16 43 43 H 1.08998 * 109.98619 * 297.25069 * 27 11 9 44 44 H 1.09001 * 109.98301 * 58.52215 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0006 5 8 4.6150 1.5464 -0.0002 6 7 3.6181 -0.6385 0.0052 7 1 4.4243 -1.1780 0.0103 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0006 10 8 0.6983 -2.7770 0.1144 11 7 2.7890 -3.4906 -0.1282 12 6 4.2295 -3.3040 -0.3886 13 6 4.6950 -4.6325 -1.0419 14 6 3.8301 -5.6597 -0.2939 15 6 3.6270 -6.9357 -1.1254 16 6 3.3518 -7.9850 -0.0156 17 7 4.2094 -7.5795 1.1147 18 6 4.6610 -8.4039 2.1104 19 1 5.2871 -8.0084 2.8965 20 6 4.3149 -9.7482 2.1088 21 7 3.5523 -10.2302 1.1505 22 14 4.9304 -10.8727 3.4675 23 1 5.7634 -10.0918 4.4170 24 1 3.7717 -11.4569 4.1896 25 1 5.7460 -11.9635 2.8758 26 6 4.4989 -6.1392 0.9936 27 6 2.5108 -4.9348 -0.0302 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.9237 1.7896 0.8833 32 1 4.3857 -2.4703 -1.0731 33 1 4.7641 -3.1318 0.5455 34 1 4.4763 -4.6411 -2.1097 35 1 5.7556 -4.8069 -0.8606 36 1 2.7697 -6.8366 -1.7913 37 1 4.5283 -7.1855 -1.6851 38 1 3.6261 -8.9819 -0.3605 39 1 2.3023 -7.9619 0.2779 40 1 3.3108 -11.1697 1.1491 41 1 5.5756 -5.9792 0.9361 42 1 4.0876 -5.6034 1.8491 43 1 2.1458 -5.1770 0.9678 44 1 1.7715 -5.2233 -0.7774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041383804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:51 Heat of formation + Delta-G solvation = 1.476837 kcal Electronic energy + Delta-G solvation = -27474.429241 eV Core-core repulsion = 23621.295828 eV Total energy + Delta-G solvation = -3853.133413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46125 -41.43856 -39.70791 -38.37856 -37.35358 -34.91605 -34.12288 -32.32067 -31.78556 -30.98672 -29.59721 -28.45200 -27.27920 -25.77623 -24.18674 -23.32502 -22.42906 -22.13306 -20.98184 -20.27379 -19.63653 -18.91888 -18.40872 -17.59424 -17.31999 -17.00611 -16.77692 -16.44651 -15.93531 -15.62713 -15.27447 -14.86330 -14.66487 -14.36401 -14.18130 -13.98901 -13.88328 -13.66158 -13.44264 -13.35378 -13.17905 -13.04411 -13.01382 -12.82650 -12.70665 -12.50308 -11.99522 -11.81428 -11.57163 -11.53105 -11.45719 -11.32030 -11.19905 -11.02802 -10.74690 -9.98253 -9.46727 -8.88235 -7.77561 -5.21502 0.00688 1.23756 1.46285 1.47120 1.52686 1.57001 1.78087 2.07472 2.48938 2.77132 3.24448 3.35677 3.40472 3.59882 3.60227 3.78049 3.87908 3.96298 4.08561 4.16737 4.25801 4.37051 4.41868 4.64791 4.67508 4.71444 4.81117 4.84314 4.86038 4.92743 4.95328 5.01078 5.01562 5.16912 5.19998 5.31811 5.41924 5.46929 5.64137 5.74507 5.82823 6.26484 6.31301 6.59976 6.65227 6.88651 7.10795 7.78395 8.42012 9.24426 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.002875 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.881638 B = 9738.137834 C =10025.502870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.105 3.895 3 N -0.517 5.517 4 C 0.427 3.573 5 O -0.439 6.439 6 N -0.544 5.544 7 H 0.436 0.564 8 C -0.089 4.089 9 C 0.606 3.394 10 O -0.558 6.558 11 N -0.614 5.614 12 C 0.084 3.916 13 C -0.103 4.103 14 C -0.072 4.072 15 C -0.113 4.113 16 C 0.153 3.847 17 N -0.627 5.627 18 C -0.236 4.236 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.977 3.023 23 H -0.266 1.266 24 H -0.296 1.296 25 H -0.290 1.290 26 C 0.150 3.850 27 C 0.136 3.864 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.433 0.567 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.071 0.929 39 H -0.020 1.020 40 H 0.246 0.754 41 H 0.045 0.955 42 H 0.013 0.987 43 H 0.045 0.955 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.532 21.853 -5.220 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.030 4.030 3 N -0.249 5.249 4 C 0.124 3.876 5 O -0.244 6.244 6 N -0.168 5.168 7 H 0.283 0.717 8 C -0.204 4.204 9 C 0.396 3.604 10 O -0.437 6.437 11 N -0.347 5.347 12 C -0.038 4.038 13 C -0.141 4.141 14 C -0.073 4.073 15 C -0.152 4.152 16 C 0.028 3.972 17 N -0.353 5.353 18 C -0.365 4.365 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.599 5.599 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.217 1.217 26 C 0.025 3.975 27 C 0.014 3.986 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.296 0.704 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.089 0.911 39 H -0.002 1.002 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.669 22.415 -5.643 23.403 hybrid contribution 0.752 -2.065 1.478 2.649 sum 4.421 20.350 -4.165 21.237 Atomic orbital electron populations 1.20314 0.85476 1.03771 1.03715 1.21191 0.97563 0.86060 0.98225 1.70284 0.99724 1.30613 1.24289 1.20256 0.87568 0.79216 1.00524 1.84811 1.41998 1.60773 1.36819 1.44109 1.08595 1.07883 1.56178 0.71749 1.20394 0.84175 0.93836 1.21954 1.16531 0.84594 0.82581 0.76695 1.90839 1.17210 1.83156 1.52463 1.48578 1.09621 1.06039 1.70479 1.22877 0.79483 1.00100 1.01364 1.22677 1.00734 0.90438 1.00204 1.21402 0.94264 0.95528 0.96105 1.22709 1.02175 0.93524 0.96803 1.21777 0.90811 0.98337 0.86317 1.44946 1.58186 1.04657 1.27485 1.19473 1.24624 0.90154 1.02242 0.90088 1.25603 1.00772 0.98520 1.01118 1.70063 1.41907 1.13123 1.34764 0.85022 0.77145 0.78732 0.78503 1.19029 1.22373 1.21700 1.21320 0.97561 0.84321 0.94282 1.21662 0.97354 0.78756 1.00839 0.89883 0.89529 0.90372 0.70435 0.88553 0.89158 0.88510 0.87160 0.90099 0.90107 0.91078 1.00213 0.94431 0.93717 0.96888 0.93668 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.81 71.24 0.70 -0.95 16 2 C 0.10 2.56 7.14 41.99 0.30 2.85 16 3 N -0.52 -12.06 11.22 -301.67 -3.39 -15.44 16 4 C 0.43 7.44 9.43 179.99 1.70 9.13 16 5 O -0.44 -4.68 13.62 -84.81 -1.16 -5.84 16 6 N -0.54 -8.79 5.47 -300.13 -1.64 -10.43 16 7 H 0.44 4.50 5.54 -92.71 -0.51 3.98 16 8 C -0.09 -2.08 6.82 39.80 0.27 -1.81 16 9 C 0.61 17.23 7.80 86.36 0.67 17.90 16 10 O -0.56 -19.67 15.22 -4.46 -0.07 -19.74 16 11 N -0.61 -15.56 3.34 -817.86 -2.73 -18.30 16 12 C 0.08 1.36 5.24 86.93 0.46 1.82 16 13 C -0.10 -1.89 6.04 31.58 0.19 -1.70 16 14 C -0.07 -2.10 0.60 -51.85 -0.03 -2.13 16 15 C -0.11 -3.80 6.04 31.56 0.19 -3.61 16 16 C 0.15 7.29 5.85 86.92 0.51 7.80 16 17 N -0.63 -31.02 3.41 -693.04 -2.36 -33.38 16 18 C -0.24 -12.92 10.28 84.03 0.86 -12.06 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 21 N -0.95 -56.15 10.09 21.65 0.22 -55.93 16 22 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 C 0.15 5.57 6.40 86.14 0.55 6.12 16 27 C 0.14 4.22 6.03 86.14 0.52 4.74 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.91 6.61 -2.39 -0.02 1.90 16 31 H 0.43 -0.12 9.06 -74.06 -0.67 -0.79 16 32 H 0.10 1.09 6.23 -2.39 -0.01 1.08 16 33 H 0.09 1.19 7.86 -2.39 -0.02 1.18 16 34 H 0.10 1.55 8.07 -2.39 -0.02 1.53 16 35 H 0.11 1.69 7.62 -2.39 -0.02 1.67 16 36 H 0.08 2.42 7.62 -2.38 -0.02 2.40 16 37 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 38 H 0.07 3.91 5.89 -2.39 -0.01 3.89 16 39 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 41 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 42 H 0.01 0.51 7.61 -2.39 -0.02 0.49 16 43 H 0.04 1.68 7.60 -2.39 -0.02 1.67 16 44 H 0.07 2.18 7.53 -2.39 -0.02 2.16 16 Total: -1.00 -76.82 349.63 -1.87 -78.69 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -0.13 Total: 8.35 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.36 Total: 24.79 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -9.90 Total: -133.48 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.22 Total: -25.58 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -76.82 -1.87 -78.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041383804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.169 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds