Wall clock time and date at job start Tue Mar 31 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30272 * 126.27882 * 2 1 4 4 N 1.28677 * 109.37838 * 179.72923 * 3 2 1 5 5 C 1.30271 * 109.37905 * 0.44646 * 4 3 2 6 6 C 1.50696 * 126.28301 * 179.82761 * 5 4 3 7 7 C 1.50705 * 109.47357 * 89.68742 * 6 5 4 8 8 O 1.21283 * 119.99834 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00106 * 180.02562 * 7 6 5 10 10 C 1.44753 * 117.18479 * 359.97438 * 9 7 6 11 11 C 1.51494 * 111.70651 * 213.71718 * 10 9 7 12 12 C 1.49434 * 114.09170 * 317.18318 * 11 10 9 13 13 H 1.09001 * 107.67682 * 165.90054 * 12 11 10 14 14 C 1.54520 * 112.97407 * 284.22508 * 12 11 10 15 15 C 1.55246 * 100.54502 * 166.31950 * 14 12 11 16 16 N 1.47475 * 105.05580 * 323.80401 * 15 14 12 17 17 C 1.36939 * 125.66786 * 200.96809 * 16 15 14 18 18 H 1.08003 * 119.99981 * 169.79762 * 17 16 15 19 19 C 1.38810 * 119.99556 * 349.79995 * 17 16 15 20 20 N 1.31615 * 120.00459 * 350.28224 * 19 17 16 21 21 Si 1.86806 * 119.99490 * 170.28816 * 19 17 16 22 22 H 1.48497 * 109.47034 * 94.54242 * 21 19 17 23 23 H 1.48498 * 109.46650 * 214.54238 * 21 19 17 24 24 H 1.48499 * 109.47058 * 334.53848 * 21 19 17 25 25 C 1.48296 * 108.66829 * 20.94491 * 16 15 14 26 26 H 1.08997 * 108.75415 * 121.12521 * 25 16 15 27 27 C 1.43777 * 117.18510 * 179.97438 * 9 7 6 28 28 O 1.34361 * 126.28083 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46927 * 270.00034 * 1 2 3 30 30 H 1.08995 * 109.46891 * 30.00601 * 1 2 3 31 31 H 1.09005 * 109.46501 * 150.00033 * 1 2 3 32 32 H 1.09007 * 109.46960 * 329.68735 * 6 5 4 33 33 H 1.09003 * 109.47196 * 209.68931 * 6 5 4 34 34 H 1.09001 * 109.03282 * 93.15071 * 10 9 7 35 35 H 1.08998 * 109.03760 * 334.29404 * 10 9 7 36 36 H 1.09001 * 108.55668 * 195.98738 * 11 10 9 37 37 H 1.09001 * 108.55599 * 78.37589 * 11 10 9 38 38 H 1.09004 * 111.20289 * 284.13972 * 14 12 11 39 39 H 1.09008 * 111.20113 * 48.49367 * 14 12 11 40 40 H 1.09001 * 110.32906 * 82.69498 * 15 14 12 41 41 H 1.09002 * 110.32639 * 204.91251 * 15 14 12 42 42 H 0.97002 * 120.00146 * 180.02562 * 20 19 17 43 43 H 1.09003 * 108.06148 * 279.11213 * 27 9 7 44 44 H 1.09004 * 108.06050 * 35.60304 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6761 0.0057 5 6 3.5655 -0.6254 0.0000 6 6 4.8177 -1.4637 0.0001 7 6 5.2351 -1.7432 1.4209 8 8 4.5805 -1.3044 2.3427 9 7 6.3365 -2.4800 1.6672 10 6 7.0722 -2.9726 0.5221 11 6 7.6925 -4.3275 0.7952 12 6 8.3251 -4.4481 2.1437 13 1 8.5067 -5.5065 2.3306 14 6 9.6870 -3.7241 2.2379 15 6 9.8975 -3.7139 3.7760 16 7 8.5514 -3.5177 4.3456 17 6 8.2768 -3.0472 5.6019 18 1 7.2645 -2.7830 5.8703 19 6 9.2995 -2.9098 6.5304 20 7 10.4914 -3.4061 6.2749 21 14 8.9839 -2.0205 8.1426 22 1 8.6300 -3.0094 9.1923 23 1 10.2074 -1.2835 8.5490 24 1 7.8636 -1.0615 7.9678 25 6 7.5445 -3.9142 3.3316 26 1 6.9264 -4.7114 3.7445 27 6 6.6792 -2.7088 3.0446 28 8 2.3021 -1.0831 -0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8901 -0.5139 32 1 5.6148 -0.9263 -0.5138 33 1 4.6245 -2.4054 -0.5138 34 1 7.8623 -2.2634 0.2753 35 1 6.3939 -3.0568 -0.3270 36 1 8.4516 -4.5207 0.0373 37 1 6.9169 -5.0883 0.7065 38 1 10.4708 -4.2920 1.7366 39 1 9.6228 -2.7105 1.8420 40 1 10.3139 -4.6651 4.1075 41 1 10.5534 -2.8919 4.0629 42 1 11.2059 -3.3104 6.9239 43 1 7.1980 -1.8247 3.4152 44 1 5.7533 -2.8151 3.6101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042047233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:56 Heat of formation + Delta-G solvation = 41.187514 kcal Electronic energy + Delta-G solvation = -27472.128966 eV Core-core repulsion = 23620.717538 eV Total energy + Delta-G solvation = -3851.411428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.34753 -40.53981 -38.42108 -36.27974 -35.55598 -33.84285 -33.20945 -31.82205 -31.19374 -29.38691 -28.56996 -27.38652 -24.86372 -24.27271 -23.00997 -22.75738 -22.55331 -20.51719 -19.94153 -18.01993 -17.47532 -17.32956 -16.94375 -16.89996 -16.02165 -15.70829 -15.05774 -14.97305 -14.78723 -14.46539 -14.10697 -13.92441 -13.67154 -13.44129 -13.16353 -13.11101 -12.68516 -12.49312 -12.42651 -12.31263 -11.96289 -11.74416 -11.63042 -11.37400 -11.20269 -11.08058 -10.80321 -10.76637 -10.13238 -10.08033 -9.97514 -9.89162 -9.75279 -9.65409 -9.51617 -8.62118 -8.35192 -6.89619 -5.77846 -3.11366 0.97113 2.01226 2.24804 2.54759 3.11077 3.40093 3.46572 3.49862 3.58714 4.13429 4.30394 4.46131 4.50885 4.74258 4.80266 4.87836 4.93449 4.99683 5.01276 5.16253 5.28853 5.29083 5.35140 5.39724 5.47888 5.55967 5.57345 5.71418 5.77131 5.90356 5.98270 6.12299 6.15785 6.41352 6.48982 6.55048 6.72193 6.89183 6.98733 7.39226 7.47047 7.55702 7.76618 8.15489 8.17231 8.21078 9.15469 9.76066 10.41937 11.34962 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003306 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.289070 B = 8467.280250 C = 9766.752293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.161 3.839 3 N -0.288 5.288 4 N -0.274 5.274 5 C 0.187 3.813 6 C -0.046 4.046 7 C 0.503 3.497 8 O -0.530 6.530 9 N -0.581 5.581 10 C 0.106 3.894 11 C -0.111 4.111 12 C -0.093 4.093 13 H 0.067 0.933 14 C -0.142 4.142 15 C 0.174 3.826 16 N -0.595 5.595 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.003 4.003 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.163 3.837 26 H 0.041 0.959 27 C 0.105 3.895 28 O -0.221 6.221 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -0.893 -19.071 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 N -0.136 5.136 4 N -0.120 5.120 5 C -0.024 4.024 6 C -0.088 4.088 7 C 0.288 3.712 8 O -0.406 6.406 9 N -0.313 5.313 10 C -0.017 4.017 11 C -0.150 4.150 12 C -0.112 4.112 13 H 0.086 0.914 14 C -0.180 4.180 15 C 0.049 3.951 16 N -0.321 5.321 17 C -0.360 4.360 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.055 3.945 26 H 0.059 0.941 27 C -0.019 4.019 28 O -0.101 6.101 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.277 0.574 -18.308 22.051 hybrid contribution -0.347 -0.873 1.000 1.373 sum -12.624 -0.299 -17.308 21.425 Atomic orbital electron populations 1.20348 0.80201 1.05522 1.05379 1.27973 0.97807 0.79639 0.99592 1.74379 0.96026 1.25632 1.17561 1.74365 1.12228 1.08967 1.16451 1.26934 0.84662 0.91296 0.99548 1.20251 0.89957 1.00198 0.98350 1.20093 0.81393 0.79904 0.89792 1.90771 1.53451 1.50609 1.45803 1.46746 1.25727 1.51016 1.07814 1.21013 0.96308 0.96891 0.87509 1.20615 1.00327 0.96028 0.98007 1.20610 0.96466 1.00866 0.93239 0.91416 1.23037 0.95117 0.99268 1.00609 1.21426 0.87471 1.00371 0.85796 1.44969 0.99991 1.76069 1.11031 1.19010 0.94553 1.35714 0.86762 0.90539 1.24800 0.96207 1.00866 0.98131 1.69962 1.02164 1.48477 1.35717 0.86159 0.77184 0.79440 0.83385 1.21566 1.21571 1.20431 1.20257 0.91316 0.92917 0.89985 0.94125 1.21431 1.00460 1.01439 0.78538 1.84741 1.17414 1.38322 1.69578 0.88225 0.87562 0.88937 0.84149 0.85476 0.91564 0.90494 0.90343 0.91932 0.91994 0.92265 0.95024 0.92068 0.93691 0.90848 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.16 1.90 8.48 -12.94 -0.11 1.79 16 3 N -0.29 -4.34 12.22 32.55 0.40 -3.94 16 4 N -0.27 -4.39 12.22 32.55 0.40 -3.99 16 5 C 0.19 2.56 6.97 -12.94 -0.09 2.47 16 6 C -0.05 -0.48 4.69 -29.03 -0.14 -0.61 16 7 C 0.50 7.62 7.54 -10.98 -0.08 7.54 16 8 O -0.53 -10.69 15.37 5.55 0.09 -10.60 16 9 N -0.58 -8.53 3.12 -179.23 -0.56 -9.09 16 10 C 0.11 1.08 5.89 -5.74 -0.03 1.05 16 11 C -0.11 -1.20 5.44 -29.25 -0.16 -1.36 16 12 C -0.09 -1.43 2.44 -92.17 -0.23 -1.66 16 13 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 14 C -0.14 -2.40 6.54 -24.74 -0.16 -2.56 16 15 C 0.17 4.02 5.37 -2.32 -0.01 4.01 16 16 N -0.60 -14.60 2.95 -163.86 -0.48 -15.08 16 17 C -0.23 -6.39 9.61 -15.06 -0.14 -6.54 16 18 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 19 C 0.00 -0.09 5.41 -17.43 -0.09 -0.18 16 20 N -0.92 -26.62 10.71 55.49 0.59 -26.03 16 21 Si 0.91 22.36 29.56 -169.99 -5.03 17.33 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.16 3.20 3.42 -68.47 -0.23 2.97 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 C 0.11 2.01 5.37 -6.43 -0.03 1.98 16 28 O -0.22 -2.87 10.87 5.37 0.06 -2.81 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.14 1.06 8.03 -51.92 -0.42 0.65 16 33 H 0.13 0.80 7.23 -51.93 -0.38 0.42 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.49 5.84 -51.93 -0.30 0.18 16 36 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.98 8.09 -51.92 -0.42 0.56 16 40 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 41 H 0.06 1.59 7.16 -51.93 -0.37 1.22 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.65 7.53 -51.93 -0.39 1.25 16 44 H 0.07 1.40 7.25 -51.93 -0.38 1.02 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -36.60 354.47 -6.75 -43.35 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.42 Total: -3.40 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.14 Total: 8.93 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.35 Total: -58.14 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.14 Total: -13.41 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.60 -6.75 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042047233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.534 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds