Wall clock time and date at job start Tue Mar 31 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30272 * 126.27882 * 2 1 4 4 N 1.28677 * 109.37838 * 179.72923 * 3 2 1 5 5 C 1.30271 * 109.37905 * 0.44646 * 4 3 2 6 6 C 1.50696 * 126.28301 * 179.82761 * 5 4 3 7 7 C 1.50705 * 109.47357 * 89.68742 * 6 5 4 8 8 O 1.21283 * 119.99834 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00106 * 180.02562 * 7 6 5 10 10 C 1.44753 * 117.18479 * 359.97438 * 9 7 6 11 11 C 1.51494 * 111.70651 * 213.71718 * 10 9 7 12 12 C 1.49434 * 114.09170 * 317.18318 * 11 10 9 13 13 H 1.09001 * 107.67682 * 165.90054 * 12 11 10 14 14 C 1.54520 * 112.97407 * 284.22508 * 12 11 10 15 15 C 1.55246 * 100.54502 * 166.31950 * 14 12 11 16 16 N 1.47475 * 105.05580 * 323.80401 * 15 14 12 17 17 C 1.36939 * 125.66786 * 200.96809 * 16 15 14 18 18 H 1.08003 * 119.99981 * 169.79762 * 17 16 15 19 19 C 1.38810 * 119.99556 * 349.79995 * 17 16 15 20 20 N 1.31615 * 120.00459 * 350.28224 * 19 17 16 21 21 Si 1.86806 * 119.99490 * 170.28816 * 19 17 16 22 22 H 1.48497 * 109.47034 * 94.54242 * 21 19 17 23 23 H 1.48498 * 109.46650 * 214.54238 * 21 19 17 24 24 H 1.48499 * 109.47058 * 334.53848 * 21 19 17 25 25 C 1.48296 * 108.66829 * 20.94491 * 16 15 14 26 26 H 1.08997 * 108.75415 * 121.12521 * 25 16 15 27 27 C 1.43777 * 117.18510 * 179.97438 * 9 7 6 28 28 O 1.34361 * 126.28083 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46927 * 270.00034 * 1 2 3 30 30 H 1.08995 * 109.46891 * 30.00601 * 1 2 3 31 31 H 1.09005 * 109.46501 * 150.00033 * 1 2 3 32 32 H 1.09007 * 109.46960 * 329.68735 * 6 5 4 33 33 H 1.09003 * 109.47196 * 209.68931 * 6 5 4 34 34 H 1.09001 * 109.03282 * 93.15071 * 10 9 7 35 35 H 1.08998 * 109.03760 * 334.29404 * 10 9 7 36 36 H 1.09001 * 108.55668 * 195.98738 * 11 10 9 37 37 H 1.09001 * 108.55599 * 78.37589 * 11 10 9 38 38 H 1.09004 * 111.20289 * 284.13972 * 14 12 11 39 39 H 1.09008 * 111.20113 * 48.49367 * 14 12 11 40 40 H 1.09001 * 110.32906 * 82.69498 * 15 14 12 41 41 H 1.09002 * 110.32639 * 204.91251 * 15 14 12 42 42 H 0.97002 * 120.00146 * 180.02562 * 20 19 17 43 43 H 1.09003 * 108.06148 * 279.11213 * 27 9 7 44 44 H 1.09004 * 108.06050 * 35.60304 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6761 0.0057 5 6 3.5655 -0.6254 0.0000 6 6 4.8177 -1.4637 0.0001 7 6 5.2351 -1.7432 1.4209 8 8 4.5805 -1.3044 2.3427 9 7 6.3365 -2.4800 1.6672 10 6 7.0722 -2.9726 0.5221 11 6 7.6925 -4.3275 0.7952 12 6 8.3251 -4.4481 2.1437 13 1 8.5067 -5.5065 2.3306 14 6 9.6870 -3.7241 2.2379 15 6 9.8975 -3.7139 3.7760 16 7 8.5514 -3.5177 4.3456 17 6 8.2768 -3.0472 5.6019 18 1 7.2645 -2.7830 5.8703 19 6 9.2995 -2.9098 6.5304 20 7 10.4914 -3.4061 6.2749 21 14 8.9839 -2.0205 8.1426 22 1 8.6300 -3.0094 9.1923 23 1 10.2074 -1.2835 8.5490 24 1 7.8636 -1.0615 7.9678 25 6 7.5445 -3.9142 3.3316 26 1 6.9264 -4.7114 3.7445 27 6 6.6792 -2.7088 3.0446 28 8 2.3021 -1.0831 -0.0005 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8901 -0.5139 32 1 5.6148 -0.9263 -0.5138 33 1 4.6245 -2.4054 -0.5138 34 1 7.8623 -2.2634 0.2753 35 1 6.3939 -3.0568 -0.3270 36 1 8.4516 -4.5207 0.0373 37 1 6.9169 -5.0883 0.7065 38 1 10.4708 -4.2920 1.7366 39 1 9.6228 -2.7105 1.8420 40 1 10.3139 -4.6651 4.1075 41 1 10.5534 -2.8919 4.0629 42 1 11.2059 -3.3104 6.9239 43 1 7.1980 -1.8247 3.4152 44 1 5.7533 -2.8151 3.6101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042047233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:56 Heat of formation + Delta-G solvation = 10.587652 kcal Electronic energy + Delta-G solvation = -27473.455876 eV Core-core repulsion = 23620.717538 eV Total energy + Delta-G solvation = -3852.738338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.30058 -41.77679 -39.84357 -37.26478 -36.96563 -34.87203 -34.72527 -33.29141 -32.24844 -30.75317 -30.17017 -28.32064 -26.54583 -25.69209 -24.12493 -23.91617 -23.50672 -22.21659 -21.22255 -19.09831 -18.94885 -18.60789 -18.21041 -18.00416 -17.19192 -17.00459 -16.70190 -16.40543 -15.85182 -15.72622 -15.45158 -15.10402 -14.84332 -14.42627 -14.23196 -14.00196 -13.67062 -13.64461 -13.53979 -13.49968 -13.32064 -13.25069 -12.97624 -12.88254 -12.66475 -12.55417 -12.44942 -12.03357 -12.02558 -11.72473 -11.47202 -11.31776 -11.15774 -11.13619 -10.72015 -10.52246 -9.61083 -8.93981 -7.93714 -5.27565 0.04918 1.14545 1.28662 1.38992 1.40489 1.42202 1.50347 2.00378 2.43463 2.76853 3.24805 3.33531 3.38767 3.54996 3.74921 3.79454 3.85270 4.03495 4.06928 4.21629 4.23105 4.32357 4.36698 4.39838 4.47992 4.54628 4.57499 4.71687 4.72834 4.75696 4.92237 4.96745 5.03089 5.03633 5.08154 5.20953 5.36737 5.47151 5.55243 5.62801 5.64252 5.76403 6.15709 6.28670 7.01386 7.05178 7.19827 7.70717 8.35727 9.17481 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003306 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.289070 B = 8467.280250 C = 9766.752293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.170 3.830 3 N -0.333 5.333 4 N -0.314 5.314 5 C 0.181 3.819 6 C -0.034 4.034 7 C 0.499 3.501 8 O -0.593 6.593 9 N -0.579 5.579 10 C 0.091 3.909 11 C -0.108 4.108 12 C -0.081 4.081 13 H 0.068 0.932 14 C -0.122 4.122 15 C 0.174 3.826 16 N -0.617 5.617 17 C -0.241 4.241 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.942 5.942 21 Si 0.967 3.033 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.160 3.840 26 H 0.026 0.974 27 C 0.132 3.868 28 O -0.227 6.227 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.001 0.999 41 H 0.020 0.980 42 H 0.249 0.751 43 H 0.029 0.971 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -2.004 -22.925 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 N -0.179 5.179 4 N -0.160 5.160 5 C -0.032 4.032 6 C -0.074 4.074 7 C 0.287 3.713 8 O -0.474 6.474 9 N -0.310 5.310 10 C -0.029 4.029 11 C -0.146 4.146 12 C -0.100 4.100 13 H 0.086 0.914 14 C -0.160 4.160 15 C 0.050 3.950 16 N -0.343 5.343 17 C -0.370 4.370 18 H 0.085 0.915 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.796 3.204 22 H -0.210 1.210 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.053 3.947 26 H 0.044 0.956 27 C 0.006 3.994 28 O -0.107 6.107 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.193 0.807 33 H 0.198 0.802 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.020 0.980 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.424 -0.540 -22.228 25.973 hybrid contribution -0.076 -0.539 2.228 2.293 sum -13.500 -1.079 -20.001 24.154 Atomic orbital electron populations 1.20739 0.76334 1.07735 1.06653 1.29102 0.99543 0.78732 0.96677 1.74293 0.96316 1.27270 1.20044 1.74259 1.13164 1.10583 1.17961 1.27535 0.85785 0.91125 0.98714 1.20497 0.89404 1.02700 0.94805 1.20971 0.80435 0.78457 0.91458 1.90751 1.55424 1.52938 1.48328 1.46770 1.26159 1.51021 1.07003 1.21570 0.97706 0.96719 0.86921 1.20671 1.01806 0.96965 0.95170 1.20631 0.94929 1.00079 0.94365 0.91375 1.22897 0.97113 1.00647 0.95353 1.21275 0.86169 0.97067 0.90520 1.45240 1.01958 1.75955 1.11106 1.19216 0.94158 1.35190 0.88449 0.91549 1.25516 0.96224 1.02126 1.01205 1.70135 1.02669 1.49773 1.36451 0.85242 0.76820 0.78335 0.80037 1.20982 1.21442 1.20409 1.20453 0.90788 0.92547 0.90892 0.95568 1.20695 0.98138 0.99014 0.81578 1.84763 1.17466 1.38655 1.69783 0.87131 0.85870 0.86150 0.80744 0.80198 0.90262 0.84912 0.86357 0.89975 0.88653 0.91543 0.98050 0.96115 0.94188 0.95272 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.17 3.82 8.48 88.34 0.75 4.56 16 3 N -0.33 -9.95 12.22 -165.50 -2.02 -11.97 16 4 N -0.31 -9.94 12.22 -165.50 -2.02 -11.96 16 5 C 0.18 4.60 6.97 88.34 0.62 5.22 16 6 C -0.03 -0.56 4.69 29.10 0.14 -0.42 16 7 C 0.50 14.28 7.54 87.66 0.66 14.95 16 8 O -0.59 -24.54 15.37 -3.04 -0.05 -24.58 16 9 N -0.58 -15.79 3.12 -839.36 -2.62 -18.41 16 10 C 0.09 1.36 5.89 86.21 0.51 1.87 16 11 C -0.11 -1.71 5.44 28.96 0.16 -1.55 16 12 C -0.08 -2.30 2.44 -11.80 -0.03 -2.33 16 13 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 14 C -0.12 -3.89 6.54 31.88 0.21 -3.68 16 15 C 0.17 8.35 5.37 86.96 0.47 8.82 16 16 N -0.62 -31.70 2.95 -672.33 -1.98 -33.69 16 17 C -0.24 -14.00 9.61 84.03 0.81 -13.19 16 18 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 19 C -0.06 -3.33 5.41 84.86 0.46 -2.87 16 20 N -0.94 -57.32 10.71 21.65 0.23 -57.09 16 21 Si 0.97 47.90 29.56 68.60 2.03 49.92 16 22 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 C 0.16 6.38 3.42 43.65 0.15 6.53 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 C 0.13 5.18 5.37 86.27 0.46 5.64 16 28 O -0.23 -5.45 10.87 -3.70 -0.04 -5.49 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.18 1.70 8.03 -2.38 -0.02 1.68 16 33 H 0.18 1.01 7.23 -2.39 -0.02 0.99 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 0.59 5.84 -2.39 -0.01 0.58 16 36 H 0.12 1.12 8.09 -2.39 -0.02 1.10 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.07 2.04 8.09 -2.38 -0.02 2.02 16 40 H 0.00 0.08 7.95 -2.39 -0.02 0.06 16 41 H 0.02 1.13 7.16 -2.39 -0.02 1.11 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.03 1.39 7.53 -2.39 -0.02 1.37 16 44 H 0.04 1.67 7.25 -2.38 -0.02 1.65 16 Total: -1.00 -91.48 354.47 0.64 -90.85 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.01 Total: -1.32 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 6.10 Total: 23.75 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -8.42 Total: -133.12 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.09 Total: -30.08 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.92 kcal Total: -91.48 0.64 -90.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042047233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.434 kcal (2) G-P(sol) polarization free energy of solvation -91.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds