Wall clock time and date at job start Tue Mar 31 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35363 * 127.24895 * 2 1 4 4 N 1.35040 * 107.22820 * 180.02562 * 3 2 1 5 5 C 1.46494 * 124.88566 * 180.02562 * 4 3 2 6 6 N 1.28469 * 110.22793 * 359.74772 * 4 3 2 7 7 C 1.31803 * 110.07659 * 0.41869 * 6 4 3 8 8 C 1.47708 * 126.52329 * 179.85214 * 7 6 4 9 9 O 1.21573 * 120.00687 * 185.20341 * 8 7 6 10 10 N 1.34782 * 119.99903 * 5.21266 * 8 7 6 11 11 C 1.47117 * 121.06390 * 176.27826 * 10 8 7 12 12 C 1.53225 * 108.72693 * 232.31718 * 11 10 8 13 13 O 1.43125 * 109.35031 * 305.80092 * 12 11 10 14 14 C 1.42353 * 113.99443 * 59.77849 * 13 12 11 15 15 C 1.52929 * 114.29534 * 74.95672 * 14 13 12 16 16 N 1.47165 * 87.84003 * 88.27816 * 15 14 13 17 17 C 1.36943 * 135.99859 * 206.64478 * 16 15 14 18 18 H 1.08002 * 119.99166 * 7.94532 * 17 16 15 19 19 C 1.38810 * 120.00343 * 187.94633 * 17 16 15 20 20 N 1.31612 * 119.99756 * 194.43479 * 19 17 16 21 21 Si 1.86802 * 119.99877 * 14.43029 * 19 17 16 22 22 H 1.48496 * 109.47339 * 270.00288 * 21 19 17 23 23 H 1.48498 * 109.46862 * 30.00251 * 21 19 17 24 24 H 1.48495 * 109.46846 * 150.00053 * 21 19 17 25 25 C 1.47171 * 88.00892 * 26.89967 * 16 15 14 26 26 C 1.47356 * 121.05719 * 356.29623 * 10 8 7 27 27 H 1.08999 * 109.47723 * 269.97764 * 1 2 3 28 28 H 1.09004 * 109.46861 * 29.97589 * 1 2 3 29 29 H 1.09001 * 109.47365 * 149.96949 * 1 2 3 30 30 H 1.07994 * 126.38512 * 0.04339 * 3 2 1 31 31 H 1.09006 * 109.47282 * 90.00174 * 5 4 3 32 32 H 1.08999 * 109.47534 * 210.00096 * 5 4 3 33 33 H 1.09004 * 109.47212 * 330.00472 * 5 4 3 34 34 H 1.08998 * 109.59998 * 112.53943 * 11 10 8 35 35 H 1.09006 * 109.59747 * 352.08291 * 11 10 8 36 36 H 1.08999 * 109.49637 * 185.83966 * 12 11 10 37 37 H 1.09004 * 109.49418 * 65.76068 * 12 11 10 38 38 H 1.08993 * 113.49358 * 333.53041 * 15 14 13 39 39 H 1.09003 * 113.54335 * 203.02753 * 15 14 13 40 40 H 0.97002 * 120.00556 * 354.92439 * 20 19 17 41 41 H 1.09005 * 113.49062 * 87.84183 * 25 16 15 42 42 H 1.08994 * 113.49509 * 218.35222 * 25 16 15 43 43 H 1.09006 * 109.74982 * 12.09003 * 26 10 8 44 44 H 1.08999 * 109.74808 * 251.37144 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7937 1.4574 -0.0002 6 7 3.5997 -0.6695 0.0044 7 6 2.3635 -1.1264 -0.0006 8 6 1.9504 -2.5446 -0.0005 9 8 0.7742 -2.8353 -0.1009 10 7 2.8775 -3.5165 0.1112 11 6 2.4867 -4.9323 0.1955 12 6 3.1589 -5.5559 1.4232 13 8 4.5707 -5.3304 1.3567 14 6 4.9363 -3.9550 1.3237 15 6 4.8093 -3.2378 2.6684 16 7 6.1875 -3.6623 2.9619 17 6 6.9212 -3.9154 4.0902 18 1 6.4381 -3.9313 5.0560 19 6 8.2856 -4.1513 3.9925 20 7 8.9385 -4.6683 5.0116 21 14 9.1948 -3.7349 2.4147 22 1 9.1784 -4.9113 1.5087 23 1 8.5291 -2.5872 1.7479 24 1 10.5999 -3.3752 2.7334 25 6 6.4334 -3.6896 1.5111 26 6 4.3149 -3.1948 0.1531 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 2.0220 2.1137 0.0007 31 1 5.0913 1.6656 1.0276 32 1 5.6026 0.9385 -0.5146 33 1 4.5792 2.3949 -0.5133 34 1 2.8112 -5.4554 -0.7041 35 1 1.4038 -5.0074 0.2941 36 1 2.9623 -6.6279 1.4403 37 1 2.7597 -5.0981 2.3283 38 1 4.0670 -3.6836 3.3303 39 1 4.6978 -2.1573 2.5768 40 1 8.4829 -4.8162 5.8550 41 1 6.7585 -2.7306 1.1075 42 1 7.0664 -4.5180 1.1931 43 1 4.4483 -2.1226 0.2979 44 1 4.7886 -3.5028 -0.7790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053253656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:18 Heat of formation + Delta-G solvation = 96.362175 kcal Electronic energy + Delta-G solvation = -28472.708848 eV Core-core repulsion = 24623.689972 eV Total energy + Delta-G solvation = -3849.018876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.87765 -40.39172 -38.82015 -36.41249 -34.69763 -34.09060 -32.44741 -32.10321 -30.33778 -28.57612 -28.08357 -26.64981 -25.86580 -25.48676 -23.64184 -22.25773 -21.17312 -20.90732 -19.45629 -18.98638 -17.58209 -17.22107 -16.78048 -16.56875 -16.26927 -15.74054 -15.44178 -14.79734 -14.56858 -14.27316 -13.86613 -13.80712 -13.66806 -13.57425 -13.40992 -13.24748 -13.03808 -12.94438 -12.69929 -12.61861 -12.37593 -11.82712 -11.68151 -11.37248 -11.01556 -10.82716 -10.64269 -10.42377 -10.22205 -9.86552 -9.65873 -9.41943 -9.30724 -9.10577 -8.90663 -8.74141 -8.30557 -7.14429 -6.26634 -3.17721 1.45497 1.94429 2.24021 2.93671 3.36647 3.42669 3.48058 3.62993 3.95168 4.10654 4.49263 4.58652 4.62793 4.70165 4.81638 4.93505 4.99904 5.02226 5.10279 5.11479 5.13676 5.31999 5.38037 5.44382 5.51173 5.63422 5.67682 5.74357 5.80146 5.92246 5.96941 6.04709 6.16305 6.16684 6.28285 6.32628 6.41403 6.48712 6.57390 6.75364 7.13413 7.33956 7.63590 7.75805 8.17016 8.27156 9.01064 9.54377 10.39767 11.23601 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.004737 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.669296 B = 5909.130148 C = 7170.076162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.146 4.146 3 C -0.020 4.020 4 N -0.283 5.283 5 C 0.083 3.917 6 N -0.256 5.256 7 C -0.011 4.011 8 C 0.607 3.393 9 O -0.538 6.538 10 N -0.598 5.598 11 C 0.079 3.921 12 C 0.048 3.952 13 O -0.338 6.338 14 C 0.060 3.940 15 C 0.104 3.896 16 N -0.614 5.614 17 C -0.300 4.300 18 H 0.080 0.920 19 C -0.023 4.023 20 N -0.933 5.933 21 Si 1.062 2.938 22 H -0.291 1.291 23 H -0.282 1.282 24 H -0.295 1.295 25 C 0.121 3.879 26 C 0.068 3.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.181 0.819 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.146 0.854 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 12.416 -14.331 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.163 4.163 4 N -0.070 5.070 5 C -0.057 4.057 6 N -0.092 5.092 7 C -0.171 4.171 8 C 0.394 3.606 9 O -0.414 6.414 10 N -0.331 5.331 11 C -0.043 4.043 12 C -0.030 4.030 13 O -0.255 6.255 14 C 0.018 3.982 15 C -0.022 4.022 16 N -0.341 5.341 17 C -0.426 4.426 18 H 0.098 0.902 19 C -0.222 4.222 20 N -0.576 5.576 21 Si 0.893 3.107 22 H -0.219 1.219 23 H -0.209 1.209 24 H -0.223 1.223 25 C -0.005 4.005 26 C -0.056 4.056 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.198 0.802 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.162 0.838 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.784 11.725 -14.874 22.307 hybrid contribution -2.225 0.677 0.924 2.502 sum -14.009 12.402 -13.950 23.338 Atomic orbital electron populations 1.20176 0.88110 1.03019 1.02344 1.20331 0.97417 0.90329 1.07527 1.22614 0.83667 1.00480 1.09551 1.45497 1.07190 1.03908 1.50382 1.22248 0.84777 0.93716 1.04943 1.73215 1.22558 0.93484 1.19910 1.21771 0.89502 0.94744 1.11038 1.16944 0.84851 0.82585 0.76206 1.90728 1.16888 1.82459 1.51351 1.48004 1.07250 1.06221 1.71598 1.22328 1.01856 0.80554 0.99609 1.22923 0.82515 1.01146 0.96426 1.87961 1.21079 1.22374 1.94113 1.23094 0.98002 0.82864 0.94216 1.22800 0.89832 0.96373 0.93242 1.45985 1.09249 1.78377 1.00509 1.20093 0.91230 1.46447 0.84830 0.90205 1.25752 0.92859 0.98503 1.05098 1.70888 1.39656 1.43515 1.03505 0.83796 0.75574 0.76565 0.74760 1.21862 1.20870 1.22284 1.22643 0.91604 0.99336 0.86904 1.23198 0.78591 1.05117 0.98697 0.91540 0.92065 0.89845 0.80198 0.89327 0.88238 0.88586 0.90540 0.88186 0.87726 0.92716 0.93747 0.94190 0.92911 0.92155 0.91915 0.83799 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.98 36.00 0.36 -0.45 16 2 C -0.15 -1.76 6.25 -104.40 -0.65 -2.41 16 3 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16 4 N -0.28 -2.93 3.70 -68.13 -0.25 -3.18 16 5 C 0.08 0.50 11.31 59.84 0.68 1.18 16 6 N -0.26 -3.48 8.34 33.42 0.28 -3.20 16 7 C -0.01 -0.17 6.90 -82.77 -0.57 -0.74 16 8 C 0.61 9.68 7.72 -12.39 -0.10 9.59 16 9 O -0.54 -9.23 14.57 5.30 0.08 -9.16 16 10 N -0.60 -9.22 3.03 -173.65 -0.53 -9.74 16 11 C 0.08 1.08 6.58 -3.59 -0.02 1.06 16 12 C 0.05 0.72 6.90 37.27 0.26 0.98 16 13 O -0.34 -6.59 10.55 -35.23 -0.37 -6.96 16 14 C 0.06 1.16 1.29 -90.67 -0.12 1.04 16 15 C 0.10 2.24 7.90 -8.19 -0.06 2.17 16 16 N -0.61 -15.73 3.63 -184.56 -0.67 -16.40 16 17 C -0.30 -8.90 11.04 -15.06 -0.17 -9.07 16 18 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 20 N -0.93 -29.95 13.70 55.49 0.76 -29.18 16 21 Si 1.06 26.73 25.50 -169.99 -4.34 22.39 16 22 H -0.29 -7.12 6.98 56.52 0.39 -6.72 16 23 H -0.28 -6.40 5.58 56.52 0.32 -6.08 16 24 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 25 C 0.12 2.65 5.03 -8.04 -0.04 2.61 16 26 C 0.07 1.08 5.66 -3.69 -0.02 1.06 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.00 6.63 -51.93 -0.34 0.66 16 30 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.27 8.13 -51.93 -0.42 -0.16 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.31 7.08 -51.93 -0.37 0.94 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.87 7.30 -51.93 -0.38 0.49 16 38 H 0.04 0.97 7.36 -51.93 -0.38 0.59 16 39 H 0.04 0.83 7.93 -51.93 -0.41 0.42 16 40 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 41 H 0.06 1.22 6.93 -51.93 -0.36 0.86 16 42 H 0.06 1.44 6.23 -51.93 -0.32 1.12 16 43 H 0.15 2.27 3.73 -93.81 -0.35 1.92 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -37.33 349.30 -6.92 -44.25 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.39 Total: 0.09 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.75 Total: 5.83 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.41 Total: -61.71 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.29 Total: -16.12 kcal Atomic # 14 Polarization: 26.73 SS G_CDS: -4.34 Total: 22.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.33 -6.92 -44.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053253656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.611 kcal (2) G-P(sol) polarization free energy of solvation -37.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds