Wall clock time and date at job start Tue Mar 31 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35363 * 127.24895 * 2 1 4 4 N 1.35040 * 107.22820 * 180.02562 * 3 2 1 5 5 C 1.46494 * 124.88566 * 180.02562 * 4 3 2 6 6 N 1.28469 * 110.22793 * 359.74772 * 4 3 2 7 7 C 1.31803 * 110.07659 * 0.41869 * 6 4 3 8 8 C 1.47708 * 126.52329 * 179.85214 * 7 6 4 9 9 O 1.21573 * 120.00687 * 185.20341 * 8 7 6 10 10 N 1.34782 * 119.99903 * 5.21266 * 8 7 6 11 11 C 1.47117 * 121.06390 * 176.27826 * 10 8 7 12 12 C 1.53225 * 108.72693 * 232.31718 * 11 10 8 13 13 O 1.43125 * 109.35031 * 305.80092 * 12 11 10 14 14 C 1.42353 * 113.99443 * 59.77849 * 13 12 11 15 15 C 1.52929 * 114.29534 * 74.95672 * 14 13 12 16 16 N 1.47165 * 87.84003 * 88.27816 * 15 14 13 17 17 C 1.36943 * 135.99859 * 206.64478 * 16 15 14 18 18 H 1.08002 * 119.99166 * 7.94532 * 17 16 15 19 19 C 1.38810 * 120.00343 * 187.94633 * 17 16 15 20 20 N 1.31612 * 119.99756 * 194.43479 * 19 17 16 21 21 Si 1.86802 * 119.99877 * 14.43029 * 19 17 16 22 22 H 1.48496 * 109.47339 * 270.00288 * 21 19 17 23 23 H 1.48498 * 109.46862 * 30.00251 * 21 19 17 24 24 H 1.48495 * 109.46846 * 150.00053 * 21 19 17 25 25 C 1.47171 * 88.00892 * 26.89967 * 16 15 14 26 26 C 1.47356 * 121.05719 * 356.29623 * 10 8 7 27 27 H 1.08999 * 109.47723 * 269.97764 * 1 2 3 28 28 H 1.09004 * 109.46861 * 29.97589 * 1 2 3 29 29 H 1.09001 * 109.47365 * 149.96949 * 1 2 3 30 30 H 1.07994 * 126.38512 * 0.04339 * 3 2 1 31 31 H 1.09006 * 109.47282 * 90.00174 * 5 4 3 32 32 H 1.08999 * 109.47534 * 210.00096 * 5 4 3 33 33 H 1.09004 * 109.47212 * 330.00472 * 5 4 3 34 34 H 1.08998 * 109.59998 * 112.53943 * 11 10 8 35 35 H 1.09006 * 109.59747 * 352.08291 * 11 10 8 36 36 H 1.08999 * 109.49637 * 185.83966 * 12 11 10 37 37 H 1.09004 * 109.49418 * 65.76068 * 12 11 10 38 38 H 1.08993 * 113.49358 * 333.53041 * 15 14 13 39 39 H 1.09003 * 113.54335 * 203.02753 * 15 14 13 40 40 H 0.97002 * 120.00556 * 354.92439 * 20 19 17 41 41 H 1.09005 * 113.49062 * 87.84183 * 25 16 15 42 42 H 1.08994 * 113.49509 * 218.35222 * 25 16 15 43 43 H 1.09006 * 109.74982 * 12.09003 * 26 10 8 44 44 H 1.08999 * 109.74808 * 251.37144 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7937 1.4574 -0.0002 6 7 3.5997 -0.6695 0.0044 7 6 2.3635 -1.1264 -0.0006 8 6 1.9504 -2.5446 -0.0005 9 8 0.7742 -2.8353 -0.1009 10 7 2.8775 -3.5165 0.1112 11 6 2.4867 -4.9323 0.1955 12 6 3.1589 -5.5559 1.4232 13 8 4.5707 -5.3304 1.3567 14 6 4.9363 -3.9550 1.3237 15 6 4.8093 -3.2378 2.6684 16 7 6.1875 -3.6623 2.9619 17 6 6.9212 -3.9154 4.0902 18 1 6.4381 -3.9313 5.0560 19 6 8.2856 -4.1513 3.9925 20 7 8.9385 -4.6683 5.0116 21 14 9.1948 -3.7349 2.4147 22 1 9.1784 -4.9113 1.5087 23 1 8.5291 -2.5872 1.7479 24 1 10.5999 -3.3752 2.7334 25 6 6.4334 -3.6896 1.5111 26 6 4.3149 -3.1948 0.1531 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5143 30 1 2.0220 2.1137 0.0007 31 1 5.0913 1.6656 1.0276 32 1 5.6026 0.9385 -0.5146 33 1 4.5792 2.3949 -0.5133 34 1 2.8112 -5.4554 -0.7041 35 1 1.4038 -5.0074 0.2941 36 1 2.9623 -6.6279 1.4403 37 1 2.7597 -5.0981 2.3283 38 1 4.0670 -3.6836 3.3303 39 1 4.6978 -2.1573 2.5768 40 1 8.4829 -4.8162 5.8550 41 1 6.7585 -2.7306 1.1075 42 1 7.0664 -4.5180 1.1931 43 1 4.4483 -2.1226 0.2979 44 1 4.7886 -3.5028 -0.7790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053253656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:18 Heat of formation + Delta-G solvation = 68.215905 kcal Electronic energy + Delta-G solvation = -28473.929362 eV Core-core repulsion = 24623.689972 eV Total energy + Delta-G solvation = -3850.239389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.70743 -41.80536 -40.16633 -37.96050 -35.97381 -34.85633 -34.59595 -33.00408 -31.75887 -29.89399 -28.96979 -27.91045 -27.22583 -27.16672 -24.75955 -23.67138 -22.64434 -21.75748 -20.88049 -20.24580 -19.59149 -18.35165 -17.89932 -17.56523 -17.46446 -17.12309 -16.68520 -16.19385 -16.03888 -15.55230 -15.39918 -15.29806 -15.23274 -14.77742 -14.43848 -14.36168 -14.16452 -13.97704 -13.58075 -13.46288 -13.25025 -13.19826 -12.93233 -12.85130 -12.66508 -12.47677 -12.21157 -11.91339 -11.50659 -11.45149 -11.37661 -10.98903 -10.82999 -10.75669 -10.24438 -9.77341 -9.55430 -9.27374 -8.64618 -5.48812 0.46518 1.16986 1.40452 1.51713 1.52559 1.67739 1.87892 2.27735 2.52828 2.56263 2.90525 3.13921 3.20299 3.44142 3.65436 3.74807 3.89231 3.94584 4.13330 4.24515 4.35562 4.37635 4.44017 4.47359 4.49683 4.50760 4.56105 4.56880 4.62088 4.70164 4.74624 4.75221 4.83196 4.91798 4.93320 5.04569 5.13272 5.21504 5.35246 5.58660 5.91129 5.97240 6.17358 6.22524 6.65961 6.81170 7.08025 7.29824 8.22750 8.86810 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.004737 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.669296 B = 5909.130148 C = 7170.076162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.171 4.171 3 C 0.000 4.000 4 N -0.278 5.278 5 C 0.072 3.928 6 N -0.278 5.278 7 C -0.046 4.046 8 C 0.602 3.398 9 O -0.560 6.560 10 N -0.603 5.603 11 C 0.083 3.917 12 C 0.046 3.954 13 O -0.365 6.365 14 C 0.080 3.920 15 C 0.106 3.894 16 N -0.644 5.644 17 C -0.294 4.294 18 H 0.041 0.959 19 C -0.081 4.081 20 N -0.967 5.967 21 Si 1.100 2.900 22 H -0.280 1.280 23 H -0.241 1.241 24 H -0.298 1.298 25 C 0.116 3.884 26 C 0.080 3.920 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.226 0.774 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.039 0.961 38 H 0.028 0.972 39 H 0.055 0.945 40 H 0.245 0.755 41 H 0.089 0.911 42 H 0.054 0.946 43 H 0.152 0.848 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 14.946 -17.344 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.181 4.181 3 C -0.143 4.143 4 N -0.065 5.065 5 C -0.066 4.066 6 N -0.116 5.116 7 C -0.203 4.203 8 C 0.391 3.609 9 O -0.437 6.437 10 N -0.335 5.335 11 C -0.039 4.039 12 C -0.031 4.031 13 O -0.283 6.283 14 C 0.038 3.962 15 C -0.020 4.020 16 N -0.372 5.372 17 C -0.421 4.421 18 H 0.059 0.941 19 C -0.272 4.272 20 N -0.612 5.612 21 Si 0.924 3.076 22 H -0.206 1.206 23 H -0.165 1.165 24 H -0.226 1.226 25 C -0.009 4.009 26 C -0.045 4.045 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.243 0.757 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.169 0.831 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.348 14.261 -17.907 26.010 hybrid contribution -2.188 -0.060 1.939 2.924 sum -14.536 14.201 -15.968 25.845 Atomic orbital electron populations 1.20137 0.87490 1.03280 1.02248 1.20672 0.98266 0.90532 1.08599 1.23240 0.82650 1.01749 1.06663 1.45936 1.08825 1.03256 1.48479 1.22663 0.83511 0.94590 1.05861 1.73004 1.22212 0.95331 1.21028 1.21745 0.90726 0.94457 1.13380 1.17257 0.84595 0.83455 0.75632 1.90705 1.17627 1.83019 1.52397 1.48077 1.07021 1.06788 1.71621 1.22365 1.02030 0.80010 0.99511 1.23138 0.80430 1.02919 0.96572 1.87912 1.23647 1.22527 1.94241 1.22813 0.96392 0.83005 0.94020 1.22936 0.87281 0.97254 0.94524 1.45989 1.10761 1.79255 1.01221 1.19905 0.91683 1.45339 0.85175 0.94082 1.27214 0.94081 0.98235 1.07697 1.71015 1.40079 1.46301 1.03760 0.83394 0.74420 0.78229 0.71578 1.20618 1.16479 1.22612 1.22900 0.93482 1.00291 0.84229 1.23093 0.78746 1.04976 0.97644 0.91786 0.89107 0.92240 0.75719 0.88894 0.88161 0.84693 0.88673 0.87611 0.85042 0.94239 0.95319 0.92740 0.94632 0.89339 0.92757 0.83147 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 9.98 71.24 0.71 -0.69 16 2 C -0.17 -3.74 6.25 -19.72 -0.12 -3.86 16 3 C 0.00 0.01 11.40 83.54 0.95 0.96 16 4 N -0.28 -4.76 3.70 -369.46 -1.37 -6.13 16 5 C 0.07 0.57 11.31 127.77 1.44 2.02 16 6 N -0.28 -6.89 8.34 -48.18 -0.40 -7.29 16 7 C -0.05 -1.27 6.90 42.46 0.29 -0.97 16 8 C 0.60 18.73 7.72 86.75 0.67 19.40 16 9 O -0.56 -19.13 14.57 -3.94 -0.06 -19.19 16 10 N -0.60 -17.72 3.03 -821.57 -2.49 -20.21 16 11 C 0.08 2.15 6.58 86.34 0.57 2.72 16 12 C 0.05 1.36 6.90 72.06 0.50 1.85 16 13 O -0.36 -13.89 10.55 -148.98 -1.57 -15.46 16 14 C 0.08 2.94 1.29 -10.82 -0.01 2.93 16 15 C 0.11 4.51 7.90 83.33 0.66 5.17 16 16 N -0.64 -32.94 3.63 -738.70 -2.68 -35.62 16 17 C -0.29 -17.94 11.04 84.03 0.93 -17.01 16 18 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 19 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 20 N -0.97 -64.08 13.70 21.65 0.30 -63.79 16 21 Si 1.10 53.03 25.50 68.60 1.75 54.78 16 22 H -0.28 -12.89 6.98 99.48 0.69 -12.20 16 23 H -0.24 -9.84 5.58 99.48 0.55 -9.29 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 C 0.12 4.83 5.03 83.42 0.42 5.25 16 26 C 0.08 2.34 5.66 86.14 0.49 2.83 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.41 6.63 -2.39 -0.02 1.40 16 30 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 0.02 8.13 -2.38 -0.02 0.00 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.64 7.08 -2.38 -0.02 2.63 16 36 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.04 1.27 7.30 -2.39 -0.02 1.25 16 38 H 0.03 1.29 7.36 -2.39 -0.02 1.27 16 39 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 40 H 0.24 16.38 8.73 -92.71 -0.81 15.57 16 41 H 0.09 3.22 6.93 -2.38 -0.02 3.20 16 42 H 0.05 2.37 6.23 -2.39 -0.01 2.36 16 43 H 0.15 4.37 3.73 -56.56 -0.21 4.16 16 44 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -85.03 349.30 2.06 -82.97 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.62 Total: 13.83 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 7.96 Total: 16.10 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -6.64 Total: -133.04 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.63 Total: -34.65 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.75 Total: 54.78 kcal Total: -85.03 2.06 -82.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053253656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.187 kcal (2) G-P(sol) polarization free energy of solvation -85.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds