Wall clock time and date at job start Tue Mar 31 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34670 * 126.58783 * 2 1 4 4 N 1.34128 * 108.01920 * 180.28001 * 3 2 1 5 5 C 1.30500 * 109.25421 * 359.73184 * 4 3 2 6 6 N 1.35046 * 108.70238 * 0.02562 * 5 4 3 7 7 C 1.46501 * 126.39855 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46952 * 265.02202 * 7 6 5 9 9 O 1.21275 * 119.99766 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.44968 * 117.33898 * 357.47120 * 10 8 7 12 12 C 1.51953 * 111.94972 * 203.77641 * 11 10 8 13 13 O 1.41321 * 111.60954 * 319.72506 * 12 11 10 14 14 C 1.40857 * 118.30481 * 56.88412 * 13 12 11 15 15 H 1.09000 * 108.89694 * 188.17816 * 14 13 12 16 16 C 1.53924 * 110.46223 * 68.14731 * 14 13 12 17 17 N 1.46781 * 107.61772 * 221.64749 * 16 14 13 18 18 C 1.36934 * 125.36664 * 178.66606 * 17 16 14 19 19 H 1.08001 * 120.00661 * 186.20268 * 18 17 16 20 20 C 1.38822 * 119.99845 * 6.20736 * 18 17 16 21 21 N 1.31622 * 119.99878 * 7.52668 * 20 18 17 22 22 Si 1.86789 * 119.99988 * 187.52243 * 20 18 17 23 23 H 1.48508 * 109.46927 * 84.99353 * 22 20 18 24 24 H 1.48500 * 109.47442 * 324.99311 * 22 20 18 25 25 H 1.48500 * 109.47398 * 204.99220 * 22 20 18 26 26 C 1.46879 * 109.27098 * 358.41200 * 17 16 14 27 27 C 1.44543 * 117.34147 * 177.49213 * 10 8 7 28 28 H 1.08995 * 109.32585 * 286.13013 * 27 10 8 29 29 H 1.09000 * 109.47233 * 270.16792 * 1 2 3 30 30 H 1.08999 * 109.46933 * 30.16828 * 1 2 3 31 31 H 1.08995 * 109.46882 * 150.16528 * 1 2 3 32 32 H 1.08002 * 125.99511 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.65059 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.46931 * 145.02125 * 7 6 5 35 35 H 1.08997 * 109.46874 * 25.02221 * 7 6 5 36 36 H 1.09003 * 108.98183 * 83.14131 * 11 10 8 37 37 H 1.09001 * 108.98463 * 324.41435 * 11 10 8 38 38 H 1.09004 * 109.05583 * 199.17543 * 12 11 10 39 39 H 1.09000 * 108.99891 * 80.23355 * 12 11 10 40 40 H 1.09000 * 109.95495 * 102.06040 * 16 14 13 41 41 H 1.09000 * 109.70991 * 341.09762 * 16 14 13 42 42 H 0.96994 * 119.99874 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.06673 * 137.30833 * 26 17 16 44 44 H 1.09000 * 110.06351 * 258.83269 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6542 -0.0062 5 6 3.5969 -0.6507 -0.0043 6 7 2.3230 -1.0990 0.0027 7 6 1.8944 -2.4999 0.0075 8 6 1.6228 -2.9469 -1.4059 9 8 1.7720 -2.1715 -2.3263 10 7 1.2131 -4.2080 -1.6468 11 6 1.1067 -5.1020 -0.5106 12 6 1.2122 -6.5605 -0.9236 13 8 0.5133 -6.8129 -2.1256 14 6 0.8575 -6.0644 -3.2682 15 1 0.1366 -6.2746 -4.0582 16 6 2.2685 -6.4419 -3.7537 17 7 2.9546 -5.2010 -4.1330 18 6 4.2421 -5.1155 -4.5915 19 1 4.6954 -4.1483 -4.7511 20 6 4.9647 -6.2720 -4.8511 21 7 4.3699 -7.4450 -4.8001 22 14 6.7811 -6.1634 -5.2731 23 1 7.5782 -6.1166 -4.0209 24 1 7.0324 -4.9334 -6.0662 25 1 7.1768 -7.3540 -6.0675 26 6 2.0406 -4.0661 -3.9492 27 6 0.9159 -4.5591 -3.0171 28 1 -0.0292 -4.1020 -3.3098 29 1 -0.3634 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 1.9865 2.1118 -0.0004 33 1 4.4819 -1.2696 -0.0078 34 1 0.9858 -2.5999 0.6012 35 1 2.6807 -3.1189 0.4395 36 1 0.1462 -4.9406 -0.0211 37 1 1.9055 -4.8747 0.1955 38 1 0.7971 -7.1853 -0.1327 39 1 2.2630 -6.8147 -1.0629 40 1 2.2002 -7.1049 -4.6162 41 1 2.8144 -6.9350 -2.9494 42 1 4.8746 -8.2531 -4.9819 43 1 2.5688 -3.2312 -3.4888 44 1 1.6241 -3.7620 -4.9095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083144333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:12 Heat of formation + Delta-G solvation = 47.075278 kcal Electronic energy + Delta-G solvation = -28608.019704 eV Core-core repulsion = 24756.863588 eV Total energy + Delta-G solvation = -3851.156116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18435 -40.86260 -38.55667 -36.04025 -35.06412 -34.08072 -32.45343 -31.97012 -30.13728 -28.78540 -27.99009 -26.75807 -26.44831 -24.63623 -23.45319 -21.76907 -21.35467 -20.33622 -19.71826 -18.69243 -17.81103 -17.32617 -16.91549 -16.69185 -15.74753 -15.60488 -15.27196 -14.95326 -14.71743 -14.44598 -14.09828 -13.89252 -13.83972 -13.57988 -13.09302 -12.94943 -12.90534 -12.78441 -12.48912 -12.30642 -12.24708 -11.96097 -11.53883 -11.22468 -10.98816 -10.79597 -10.65113 -10.60681 -10.14607 -9.95537 -9.89210 -9.77986 -9.42823 -8.99051 -8.64937 -8.42090 -8.25741 -6.85162 -5.75765 -3.11198 1.92602 2.44159 2.54170 3.00194 3.24058 3.37437 3.43236 3.45146 3.93996 4.17803 4.39586 4.46575 4.62460 4.64745 4.70908 4.78457 4.93076 4.99332 5.05482 5.14663 5.28904 5.37190 5.39167 5.43663 5.53010 5.62482 5.70098 5.72925 5.75580 5.83430 5.94123 6.16667 6.33941 6.34682 6.70937 6.77177 7.01251 7.10983 7.20538 7.28066 7.54906 7.65259 7.76427 8.07832 8.11399 8.21650 9.16441 9.77168 10.40130 11.34258 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.004685 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.601278 B = 5974.550460 C = 7372.154110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.031 4.031 4 N -0.493 5.493 5 C 0.194 3.806 6 N -0.441 5.441 7 C 0.086 3.914 8 C 0.488 3.512 9 O -0.502 6.502 10 N -0.579 5.579 11 C 0.074 3.926 12 C 0.058 3.942 13 O -0.369 6.369 14 C 0.070 3.930 15 H 0.112 0.888 16 C 0.148 3.852 17 N -0.600 5.600 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.110 3.890 27 C 0.111 3.889 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.166 0.834 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.253 0.747 43 H 0.084 0.916 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 6.058 14.220 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.130 4.130 3 C -0.178 4.178 4 N -0.210 5.210 5 C -0.088 4.088 6 N -0.125 5.125 7 C -0.041 4.041 8 C 0.274 3.726 9 O -0.377 6.377 10 N -0.314 5.314 11 C -0.050 4.050 12 C -0.019 4.019 13 O -0.286 6.286 14 C 0.011 3.989 15 H 0.130 0.870 16 C 0.023 3.977 17 N -0.327 5.327 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.216 1.216 26 C -0.015 4.015 27 C 0.007 3.993 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.184 0.816 33 H 0.220 0.780 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.283 6.524 13.627 18.276 hybrid contribution 0.555 -0.609 -0.265 0.866 sum -9.728 5.915 13.362 17.555 Atomic orbital electron populations 1.20183 0.87525 1.03494 1.02100 1.21169 0.94418 0.86737 1.10720 1.21976 0.88481 0.98235 1.09090 1.70264 1.22375 1.08767 1.19606 1.24915 0.86970 0.91794 1.05159 1.44898 1.07498 1.05255 1.54847 1.21772 1.04191 0.81441 0.96668 1.20642 0.78457 0.82633 0.90903 1.90711 1.49707 1.52923 1.44318 1.46600 1.66755 1.10398 1.07639 1.21728 1.01980 0.92881 0.88382 1.22201 0.98930 0.93155 0.87652 1.86907 1.62226 1.61971 1.17530 1.23004 1.01167 0.87683 0.87017 0.87006 1.21730 0.86548 0.89684 0.99725 1.44240 1.10707 1.00720 1.77070 1.19036 0.86515 0.92938 1.36878 0.90480 1.24790 0.98559 0.95341 1.01666 1.69931 1.34495 0.96968 1.55533 0.86140 0.84798 0.76992 0.77903 1.21625 1.20626 1.21639 1.22075 0.90878 0.93500 0.95090 1.21757 0.99343 0.97522 0.80675 0.90946 0.91188 0.89972 0.91989 0.81622 0.78015 0.86477 0.85879 0.91382 0.90176 0.87745 0.92021 0.91284 0.94339 0.93710 0.89814 0.95670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.08 36.01 0.36 -0.32 16 2 C -0.02 -0.21 6.95 -81.60 -0.57 -0.77 16 3 C -0.03 -0.42 11.79 -17.81 -0.21 -0.63 16 4 N -0.49 -7.78 11.25 -14.66 -0.16 -7.95 16 5 C 0.19 2.71 12.56 -90.37 -1.13 1.57 16 6 N -0.44 -5.61 2.24 -115.27 -0.26 -5.87 16 7 C 0.09 0.88 4.83 -5.19 -0.03 0.85 16 8 C 0.49 7.16 7.21 -10.99 -0.08 7.08 16 9 O -0.50 -9.53 13.31 5.56 0.07 -9.46 16 10 N -0.58 -8.42 3.09 -168.83 -0.52 -8.94 16 11 C 0.07 0.78 5.87 -5.39 -0.03 0.75 16 12 C 0.06 0.74 6.72 36.63 0.25 0.98 16 13 O -0.37 -5.99 10.25 -34.46 -0.35 -6.35 16 14 C 0.07 1.27 3.82 -26.39 -0.10 1.17 16 15 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 16 C 0.15 3.48 5.08 -3.41 -0.02 3.46 16 17 N -0.60 -15.24 3.39 -171.42 -0.58 -15.82 16 18 C -0.23 -6.34 10.24 -15.06 -0.15 -6.49 16 19 H 0.08 2.17 7.84 -52.49 -0.41 1.75 16 20 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 21 N -0.92 -26.67 10.43 55.49 0.58 -26.09 16 22 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.11 2.42 6.29 -3.23 -0.02 2.40 16 27 C 0.11 1.95 3.41 -68.51 -0.23 1.71 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.60 7.95 -51.93 -0.41 0.18 16 32 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.20 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.12 0.82 7.96 -51.93 -0.41 0.41 16 35 H 0.12 0.96 7.14 -51.93 -0.37 0.59 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.64 6.31 -51.93 -0.33 0.31 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.94 6.83 -51.93 -0.35 0.58 16 40 H 0.07 1.83 6.97 -51.93 -0.36 1.47 16 41 H 0.04 0.98 6.30 -51.93 -0.33 0.66 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.08 1.97 4.81 -52.41 -0.25 1.72 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -35.85 348.66 -9.23 -45.07 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.17 Total: 1.46 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.06 Total: 11.47 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.95 Total: -64.67 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.28 Total: -15.80 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.85 -9.23 -45.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083144333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.150 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds