Wall clock time and date at job start Tue Mar 31 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34670 * 126.58783 * 2 1 4 4 N 1.34128 * 108.01920 * 180.28001 * 3 2 1 5 5 C 1.30500 * 109.25421 * 359.73184 * 4 3 2 6 6 N 1.35046 * 108.70238 * 0.02562 * 5 4 3 7 7 C 1.46501 * 126.39855 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46952 * 265.02202 * 7 6 5 9 9 O 1.21275 * 119.99766 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.44968 * 117.33898 * 357.47120 * 10 8 7 12 12 C 1.51953 * 111.94972 * 203.77641 * 11 10 8 13 13 O 1.41321 * 111.60954 * 319.72506 * 12 11 10 14 14 C 1.40857 * 118.30481 * 56.88412 * 13 12 11 15 15 H 1.09000 * 108.89694 * 188.17816 * 14 13 12 16 16 C 1.53924 * 110.46223 * 68.14731 * 14 13 12 17 17 N 1.46781 * 107.61772 * 221.64749 * 16 14 13 18 18 C 1.36934 * 125.36664 * 178.66606 * 17 16 14 19 19 H 1.08001 * 120.00661 * 186.20268 * 18 17 16 20 20 C 1.38822 * 119.99845 * 6.20736 * 18 17 16 21 21 N 1.31622 * 119.99878 * 7.52668 * 20 18 17 22 22 Si 1.86789 * 119.99988 * 187.52243 * 20 18 17 23 23 H 1.48508 * 109.46927 * 84.99353 * 22 20 18 24 24 H 1.48500 * 109.47442 * 324.99311 * 22 20 18 25 25 H 1.48500 * 109.47398 * 204.99220 * 22 20 18 26 26 C 1.46879 * 109.27098 * 358.41200 * 17 16 14 27 27 C 1.44543 * 117.34147 * 177.49213 * 10 8 7 28 28 H 1.08995 * 109.32585 * 286.13013 * 27 10 8 29 29 H 1.09000 * 109.47233 * 270.16792 * 1 2 3 30 30 H 1.08999 * 109.46933 * 30.16828 * 1 2 3 31 31 H 1.08995 * 109.46882 * 150.16528 * 1 2 3 32 32 H 1.08002 * 125.99511 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.65059 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.46931 * 145.02125 * 7 6 5 35 35 H 1.08997 * 109.46874 * 25.02221 * 7 6 5 36 36 H 1.09003 * 108.98183 * 83.14131 * 11 10 8 37 37 H 1.09001 * 108.98463 * 324.41435 * 11 10 8 38 38 H 1.09004 * 109.05583 * 199.17543 * 12 11 10 39 39 H 1.09000 * 108.99891 * 80.23355 * 12 11 10 40 40 H 1.09000 * 109.95495 * 102.06040 * 16 14 13 41 41 H 1.09000 * 109.70991 * 341.09762 * 16 14 13 42 42 H 0.96994 * 119.99874 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.06673 * 137.30833 * 26 17 16 44 44 H 1.09000 * 110.06351 * 258.83269 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6542 -0.0062 5 6 3.5969 -0.6507 -0.0043 6 7 2.3230 -1.0990 0.0027 7 6 1.8944 -2.4999 0.0075 8 6 1.6228 -2.9469 -1.4059 9 8 1.7720 -2.1715 -2.3263 10 7 1.2131 -4.2080 -1.6468 11 6 1.1067 -5.1020 -0.5106 12 6 1.2122 -6.5605 -0.9236 13 8 0.5133 -6.8129 -2.1256 14 6 0.8575 -6.0644 -3.2682 15 1 0.1366 -6.2746 -4.0582 16 6 2.2685 -6.4419 -3.7537 17 7 2.9546 -5.2010 -4.1330 18 6 4.2421 -5.1155 -4.5915 19 1 4.6954 -4.1483 -4.7511 20 6 4.9647 -6.2720 -4.8511 21 7 4.3699 -7.4450 -4.8001 22 14 6.7811 -6.1634 -5.2731 23 1 7.5782 -6.1166 -4.0209 24 1 7.0324 -4.9334 -6.0662 25 1 7.1768 -7.3540 -6.0675 26 6 2.0406 -4.0661 -3.9492 27 6 0.9159 -4.5591 -3.0171 28 1 -0.0292 -4.1020 -3.3098 29 1 -0.3634 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 1.9865 2.1118 -0.0004 33 1 4.4819 -1.2696 -0.0078 34 1 0.9858 -2.5999 0.6012 35 1 2.6807 -3.1189 0.4395 36 1 0.1462 -4.9406 -0.0211 37 1 1.9055 -4.8747 0.1955 38 1 0.7971 -7.1853 -0.1327 39 1 2.2630 -6.8147 -1.0629 40 1 2.2002 -7.1049 -4.6162 41 1 2.8144 -6.9350 -2.9494 42 1 4.8746 -8.2531 -4.9819 43 1 2.5688 -3.2312 -3.4888 44 1 1.6241 -3.7620 -4.9095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083144333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:11 Heat of formation + Delta-G solvation = 22.438056 kcal Electronic energy + Delta-G solvation = -28609.088054 eV Core-core repulsion = 24756.863588 eV Total energy + Delta-G solvation = -3852.224466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.15527 -42.09946 -39.82430 -37.67482 -36.25434 -35.15428 -34.25122 -32.81633 -31.73055 -29.95140 -29.56813 -28.11249 -27.29991 -26.44252 -24.69404 -23.12357 -22.38507 -21.84897 -20.84110 -19.92183 -19.22081 -18.47111 -18.34758 -18.00264 -17.06846 -16.89592 -16.48964 -16.38258 -15.91988 -15.75227 -15.42183 -15.22745 -14.99780 -14.74888 -14.33605 -14.20159 -13.93967 -13.86297 -13.65496 -13.54894 -13.21720 -13.20763 -13.09747 -12.91510 -12.81650 -12.42485 -12.23172 -12.16794 -11.86809 -11.74324 -11.14640 -10.93715 -10.81376 -10.71777 -10.20983 -9.62457 -9.20873 -8.92761 -7.91326 -5.29471 0.94704 1.37187 1.40569 1.41759 1.50745 1.62026 1.99355 2.21592 2.42584 2.74925 3.17277 3.25262 3.53329 3.66469 3.68250 3.72472 3.81344 3.87460 3.90036 4.00517 4.10783 4.22550 4.28533 4.35626 4.43840 4.52561 4.53921 4.70906 4.76926 4.85284 4.85476 4.98157 5.03727 5.05739 5.30957 5.42945 5.45940 5.54332 5.62947 5.84233 6.07017 6.13040 6.25943 6.40013 6.97947 7.04453 7.12097 7.69591 8.31121 9.16073 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.004685 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.601278 B = 5974.550460 C = 7372.154110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 C -0.062 4.062 4 N -0.531 5.531 5 C 0.175 3.825 6 N -0.443 5.443 7 C 0.092 3.908 8 C 0.485 3.515 9 O -0.554 6.554 10 N -0.583 5.583 11 C 0.067 3.933 12 C 0.047 3.953 13 O -0.372 6.372 14 C 0.088 3.912 15 H 0.123 0.877 16 C 0.159 3.841 17 N -0.616 5.616 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.054 4.054 21 N -0.943 5.943 22 Si 0.974 3.026 23 H -0.282 1.282 24 H -0.276 1.276 25 H -0.289 1.289 26 C 0.108 3.892 27 C 0.126 3.874 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.180 0.820 33 H 0.218 0.782 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.011 0.989 42 H 0.249 0.751 43 H 0.070 0.930 44 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.648 5.997 16.917 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C -0.208 4.208 4 N -0.249 5.249 5 C -0.107 4.107 6 N -0.126 5.126 7 C -0.034 4.034 8 C 0.273 3.727 9 O -0.433 6.433 10 N -0.317 5.317 11 C -0.054 4.054 12 C -0.029 4.029 13 O -0.289 6.289 14 C 0.029 3.971 15 H 0.141 0.859 16 C 0.034 3.966 17 N -0.343 5.343 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.248 4.248 21 N -0.592 5.592 22 Si 0.802 3.198 23 H -0.209 1.209 24 H -0.202 1.202 25 H -0.215 1.215 26 C -0.017 4.017 27 C 0.021 3.979 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.197 0.803 33 H 0.234 0.766 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -11.937 6.453 16.370 21.263 hybrid contribution 1.063 -0.597 -1.100 1.642 sum -10.873 5.856 15.270 19.639 Atomic orbital electron populations 1.20298 0.84912 1.03753 1.03966 1.21731 0.95966 0.86329 1.08672 1.22384 0.88316 0.99649 1.10444 1.70195 1.23861 1.10088 1.20802 1.25254 0.88216 0.91734 1.05457 1.45047 1.07038 1.06321 1.54225 1.22054 1.07202 0.80287 0.93809 1.21430 0.76983 0.81967 0.92364 1.90693 1.51838 1.54331 1.46415 1.46733 1.66464 1.11274 1.07234 1.22122 1.05765 0.90228 0.87321 1.22574 0.97164 0.95966 0.87199 1.86913 1.62163 1.61906 1.17954 1.22641 0.97634 0.88371 0.88452 0.85897 1.21478 0.89492 0.88376 0.97248 1.44462 1.10573 1.02513 1.76780 1.19255 0.88184 0.92747 1.37261 0.91441 1.25549 1.02461 0.94987 1.01830 1.70143 1.35644 0.97276 1.56109 0.85169 0.79970 0.76903 0.77742 1.20885 1.20154 1.21498 1.22123 0.91699 0.92268 0.95612 1.21393 0.98002 0.96467 0.82040 0.89136 0.88351 0.89323 0.92109 0.80291 0.76609 0.82024 0.82994 0.86884 0.86952 0.83353 0.95367 0.95343 0.97055 0.94138 0.91192 0.97135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.08 71.24 0.72 -0.34 16 2 C -0.01 -0.29 6.95 40.96 0.28 0.00 16 3 C -0.06 -1.67 11.79 83.52 0.98 -0.68 16 4 N -0.53 -16.80 11.25 -200.31 -2.25 -19.06 16 5 C 0.18 4.77 12.56 180.26 2.26 7.04 16 6 N -0.44 -10.23 2.24 -518.60 -1.16 -11.39 16 7 C 0.09 1.49 4.83 85.63 0.41 1.90 16 8 C 0.48 13.01 7.21 87.66 0.63 13.65 16 9 O -0.55 -20.76 13.31 -3.01 -0.04 -20.80 16 10 N -0.58 -15.28 3.09 -806.45 -2.49 -17.77 16 11 C 0.07 1.10 5.87 86.32 0.51 1.60 16 12 C 0.05 1.06 6.72 71.64 0.48 1.54 16 13 O -0.37 -11.31 10.25 -146.20 -1.50 -12.81 16 14 C 0.09 3.16 3.82 30.81 0.12 3.28 16 15 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 16 C 0.16 7.74 5.08 86.64 0.44 8.18 16 17 N -0.62 -32.45 3.39 -696.25 -2.36 -34.81 16 18 C -0.25 -14.31 10.24 84.04 0.86 -13.45 16 19 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 20 C -0.05 -3.13 5.45 84.86 0.46 -2.67 16 21 N -0.94 -56.41 10.43 21.66 0.23 -56.18 16 22 Si 0.97 46.60 29.56 68.60 2.03 48.62 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.11 4.86 6.29 86.70 0.55 5.41 16 27 C 0.13 4.28 3.41 45.66 0.16 4.43 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 0.95 7.95 -2.39 -0.02 0.93 16 32 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.22 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.16 1.22 7.96 -2.39 -0.02 1.20 16 35 H 0.15 1.62 7.14 -2.39 -0.02 1.61 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 1.15 6.31 -2.39 -0.02 1.13 16 38 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.03 0.82 6.83 -2.39 -0.02 0.81 16 40 H 0.03 1.59 6.97 -2.39 -0.02 1.58 16 41 H 0.01 0.60 6.30 -2.39 -0.02 0.59 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.07 3.40 4.81 -10.04 -0.05 3.36 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -84.29 348.66 2.30 -81.99 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.98 Total: 12.32 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 8.87 Total: 29.88 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -8.04 Total: -139.21 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.54 Total: -33.61 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -84.29 2.30 -81.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083144333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.432 kcal (2) G-P(sol) polarization free energy of solvation -84.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds