Wall clock time and date at job start Tue Mar 31 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47277 * 2 1 4 4 N 1.31921 * 120.17682 * 96.06798 * 3 2 1 5 5 N 1.28276 * 122.33103 * 180.02562 * 4 3 2 6 6 C 1.31918 * 122.51159 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.01368 * 179.97438 * 6 5 4 8 8 C 1.38495 * 119.97202 * 0.02562 * 6 5 4 9 9 C 1.39737 * 120.17082 * 275.79419 * 3 2 1 10 10 C 1.48135 * 121.14428 * 359.97438 * 9 3 2 11 11 O 1.21519 * 120.00069 * 5.56504 * 10 9 3 12 12 N 1.34777 * 119.99856 * 185.56428 * 10 9 3 13 13 C 1.46498 * 119.99549 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.89011 * 31.12093 * 13 12 10 15 15 C 1.54909 * 111.00087 * 267.18981 * 13 12 10 16 16 N 1.47428 * 104.83176 * 204.91883 * 15 13 12 17 17 C 1.36934 * 125.64622 * 204.10979 * 16 15 13 18 18 H 1.07995 * 120.00497 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99657 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46761 * 120.00180 * 21 19 17 24 24 H 1.48500 * 109.46774 * 239.99775 * 21 19 17 25 25 C 1.47022 * 108.70388 * 24.13222 * 16 15 13 26 26 C 1.54328 * 107.26786 * 358.94005 * 25 16 15 27 27 H 1.09005 * 110.71339 * 219.44013 * 26 25 16 28 28 O 1.42904 * 110.87141 * 96.24132 * 26 25 16 29 29 H 1.08997 * 109.46927 * 60.00233 * 1 2 3 30 30 H 1.08996 * 109.46684 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47148 * 120.00267 * 2 1 3 33 33 H 1.09004 * 109.46989 * 239.99590 * 2 1 3 34 34 H 1.08999 * 109.47299 * 89.99701 * 7 6 5 35 35 H 1.08995 * 109.47495 * 210.00467 * 7 6 5 36 36 H 1.09006 * 109.46698 * 329.99830 * 7 6 5 37 37 H 1.08005 * 121.09011 * 180.02562 * 8 6 5 38 38 H 0.96994 * 119.99594 * 359.97438 * 12 10 9 39 39 H 1.08992 * 110.37160 * 323.76057 * 15 13 12 40 40 H 1.09002 * 110.36296 * 86.08407 * 15 13 12 41 41 H 0.96993 * 120.00072 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.88678 * 239.52492 * 25 16 15 43 43 H 1.09001 * 110.01199 * 118.42401 * 25 16 15 44 44 H 0.96700 * 113.99810 * 66.39081 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3671 2.0057 1.1340 5 7 2.7988 3.2127 1.1820 6 6 2.9398 3.9587 0.1032 7 6 3.4517 5.3710 0.2249 8 6 2.6162 3.4439 -1.1411 9 6 2.1515 2.1235 -1.2019 10 6 1.7913 1.4967 -2.4949 11 8 1.2896 0.3901 -2.5148 12 7 2.0201 2.1538 -3.6492 13 6 1.6633 1.5340 -4.9278 14 1 0.7965 0.8828 -4.8156 15 6 2.8659 0.7615 -5.5250 16 7 2.6116 0.7313 -6.9768 17 6 3.1088 -0.1943 -7.8550 18 1 3.7466 -0.9893 -7.4980 19 6 2.7930 -0.1107 -9.2042 20 7 2.0161 0.8585 -9.6394 21 14 3.4707 -1.3737 -10.4021 22 1 4.3118 -2.3520 -9.6667 23 1 2.3456 -2.0843 -11.0612 24 1 4.2939 -0.6885 -11.4307 25 6 1.7362 1.8598 -7.3258 26 6 1.4129 2.6105 -6.0167 27 1 0.3725 2.9356 -6.0057 28 8 2.2906 3.7240 -5.8383 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 4.5387 5.3716 0.1452 35 1 3.0285 5.9809 -0.5732 36 1 3.1579 5.7819 1.1908 37 1 2.7251 4.0385 -2.0362 38 1 2.4202 3.0372 -3.6332 39 1 3.7971 1.2871 -5.3138 40 1 2.9021 -0.2518 -5.1250 41 1 1.7952 0.9167 -10.5820 42 1 0.8161 1.4893 -7.7776 43 1 2.2471 2.5275 -8.0195 44 1 2.1744 4.4254 -6.4938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083582662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:33 Heat of formation + Delta-G solvation = 0.561540 kcal Electronic energy + Delta-G solvation = -27314.623175 eV Core-core repulsion = 23461.450072 eV Total energy + Delta-G solvation = -3853.173103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59597 -39.69605 -38.07502 -35.42086 -34.94801 -34.23318 -33.75825 -32.07286 -31.33940 -28.65670 -28.20744 -27.22465 -25.52675 -24.78479 -24.04243 -22.09767 -21.06604 -20.51835 -20.14511 -17.96002 -17.94651 -17.19040 -16.74581 -16.17973 -15.62263 -15.44449 -15.02255 -14.69374 -14.68140 -14.22859 -14.11433 -13.96242 -13.54229 -13.38073 -13.23579 -12.83476 -12.74634 -12.67556 -12.44462 -12.32793 -11.88615 -11.42312 -11.17867 -11.03615 -10.94557 -10.90124 -10.63644 -10.61028 -10.44301 -10.41063 -10.14038 -9.90644 -9.73289 -9.53979 -9.41471 -8.88887 -8.73212 -6.96042 -5.82264 -3.15591 0.11451 0.60083 2.64914 2.94190 3.35164 3.37888 3.41497 3.43593 3.66542 4.00950 4.12228 4.32542 4.40314 4.44743 4.62780 4.79897 4.97924 5.14458 5.16321 5.19867 5.25109 5.33594 5.35752 5.41062 5.45545 5.58960 5.68247 5.68837 5.74106 5.90986 5.92292 5.96017 6.07688 6.22705 6.23600 6.44203 6.53298 6.77684 7.22831 7.35688 7.49534 7.66906 7.92982 8.10380 8.14325 8.44849 9.10360 9.70328 10.33744 11.30036 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.003122 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.708641 B = 8965.190661 C = 9776.090258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C 0.120 3.880 4 N -0.241 5.241 5 N -0.228 5.228 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.083 4.083 9 C -0.122 4.122 10 C 0.555 3.445 11 O -0.515 6.515 12 N -0.696 5.696 13 C 0.138 3.862 14 H 0.110 0.890 15 C 0.132 3.868 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.926 5.926 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.062 0.938 28 O -0.570 6.570 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.406 0.594 39 H 0.026 0.974 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 9.232 16.247 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.024 4.024 4 N -0.082 5.082 5 N -0.071 5.071 6 C -0.088 4.088 7 C -0.158 4.158 8 C -0.112 4.112 9 C -0.136 4.136 10 C 0.340 3.660 11 O -0.392 6.392 12 N -0.347 5.347 13 C 0.033 3.967 14 H 0.128 0.872 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.029 3.971 26 C 0.008 3.992 27 H 0.080 0.920 28 O -0.376 6.376 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.173 0.827 38 H 0.243 0.757 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.409 7.899 18.124 19.821 hybrid contribution 0.261 0.399 -2.853 2.893 sum -1.149 8.298 15.271 17.418 Atomic orbital electron populations 1.21581 0.93394 1.02519 1.01615 1.20728 0.97303 0.88611 1.04931 1.23155 0.92109 0.98667 0.88490 1.73051 1.08168 1.03094 1.23935 1.72816 1.07620 0.99615 1.27052 1.22850 0.96905 0.99001 0.90042 1.20697 1.01970 0.88804 1.04345 1.22592 0.94292 0.94557 0.99785 1.21189 1.01355 0.95116 0.95969 1.17888 0.79469 0.85542 0.83115 1.90763 1.43027 1.18671 1.86709 1.45686 1.62547 1.21259 1.05216 1.22473 1.00177 0.94251 0.79843 0.87248 1.21824 0.94225 0.97577 0.85946 1.44273 1.57131 1.30257 1.01008 1.19138 1.24238 1.04315 0.87712 0.90157 1.24797 0.99971 0.98759 0.96888 1.69908 1.40358 1.32992 1.14105 0.85994 0.78101 0.80387 0.80999 1.20414 1.21656 1.21719 1.21865 0.95696 0.89350 0.90220 1.23530 0.91975 0.86486 0.97225 0.91999 1.86216 1.63028 1.31241 1.57132 0.91957 0.93350 0.91602 0.90264 0.86987 0.89629 0.90001 0.89799 0.82679 0.75746 0.95651 0.93602 0.93711 0.92529 0.92795 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.51 37.16 0.35 -1.19 16 2 C -0.08 -0.95 5.48 -27.89 -0.15 -1.10 16 3 C 0.12 1.60 6.16 -82.00 -0.51 1.09 16 4 N -0.24 -3.38 11.42 33.81 0.39 -2.99 16 5 N -0.23 -2.97 11.41 33.57 0.38 -2.58 16 6 C 0.06 0.58 6.86 -82.46 -0.57 0.01 16 7 C -0.10 -0.63 10.19 36.01 0.37 -0.26 16 8 C -0.08 -0.83 9.34 -38.78 -0.36 -1.19 16 9 C -0.12 -1.53 5.92 -104.57 -0.62 -2.15 16 10 C 0.56 7.91 7.74 -12.20 -0.09 7.82 16 11 O -0.51 -8.50 11.69 5.35 0.06 -8.44 16 12 N -0.70 -9.65 5.13 -52.58 -0.27 -9.92 16 13 C 0.14 2.35 3.31 -65.78 -0.22 2.13 16 14 H 0.11 1.97 7.54 -51.93 -0.39 1.58 16 15 C 0.13 2.72 6.92 -2.53 -0.02 2.71 16 16 N -0.60 -14.81 3.39 -170.07 -0.58 -15.39 16 17 C -0.23 -6.18 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.93 -26.06 10.31 55.49 0.57 -25.49 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.15 3.43 5.14 -3.06 -0.02 3.42 16 26 C 0.07 1.12 4.19 -24.89 -0.10 1.02 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.13 12.15 -35.23 -0.43 -8.56 16 29 H 0.06 0.81 6.94 -51.93 -0.36 0.45 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.11 1.52 5.88 -51.93 -0.31 1.22 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.16 1.12 6.65 -52.48 -0.35 0.77 16 38 H 0.41 4.86 5.80 -40.82 -0.24 4.62 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.40 7.38 -51.93 -0.38 1.01 16 43 H 0.05 1.32 7.44 -51.93 -0.39 0.93 16 44 H 0.38 4.12 9.12 45.56 0.42 4.54 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -32.25 359.03 -7.01 -39.27 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.35 Total: 6.37 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.18 Total: 5.64 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.49 Total: -56.38 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.37 Total: -17.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.25 -7.01 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083582662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.827 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds