Wall clock time and date at job start Tue Mar 31 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47277 * 2 1 4 4 N 1.31921 * 120.17682 * 96.06798 * 3 2 1 5 5 N 1.28276 * 122.33103 * 180.02562 * 4 3 2 6 6 C 1.31918 * 122.51159 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.01368 * 179.97438 * 6 5 4 8 8 C 1.38495 * 119.97202 * 0.02562 * 6 5 4 9 9 C 1.39737 * 120.17082 * 275.79419 * 3 2 1 10 10 C 1.48135 * 121.14428 * 359.97438 * 9 3 2 11 11 O 1.21519 * 120.00069 * 5.56504 * 10 9 3 12 12 N 1.34777 * 119.99856 * 185.56428 * 10 9 3 13 13 C 1.46498 * 119.99549 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.89011 * 31.12093 * 13 12 10 15 15 C 1.54909 * 111.00087 * 267.18981 * 13 12 10 16 16 N 1.47428 * 104.83176 * 204.91883 * 15 13 12 17 17 C 1.36934 * 125.64622 * 204.10979 * 16 15 13 18 18 H 1.07995 * 120.00497 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99657 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99781 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46761 * 120.00180 * 21 19 17 24 24 H 1.48500 * 109.46774 * 239.99775 * 21 19 17 25 25 C 1.47022 * 108.70388 * 24.13222 * 16 15 13 26 26 C 1.54328 * 107.26786 * 358.94005 * 25 16 15 27 27 H 1.09005 * 110.71339 * 219.44013 * 26 25 16 28 28 O 1.42904 * 110.87141 * 96.24132 * 26 25 16 29 29 H 1.08997 * 109.46927 * 60.00233 * 1 2 3 30 30 H 1.08996 * 109.46684 * 299.99838 * 1 2 3 31 31 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47148 * 120.00267 * 2 1 3 33 33 H 1.09004 * 109.46989 * 239.99590 * 2 1 3 34 34 H 1.08999 * 109.47299 * 89.99701 * 7 6 5 35 35 H 1.08995 * 109.47495 * 210.00467 * 7 6 5 36 36 H 1.09006 * 109.46698 * 329.99830 * 7 6 5 37 37 H 1.08005 * 121.09011 * 180.02562 * 8 6 5 38 38 H 0.96994 * 119.99594 * 359.97438 * 12 10 9 39 39 H 1.08992 * 110.37160 * 323.76057 * 15 13 12 40 40 H 1.09002 * 110.36296 * 86.08407 * 15 13 12 41 41 H 0.96993 * 120.00072 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.88678 * 239.52492 * 25 16 15 43 43 H 1.09001 * 110.01199 * 118.42401 * 25 16 15 44 44 H 0.96700 * 113.99810 * 66.39081 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3671 2.0057 1.1340 5 7 2.7988 3.2127 1.1820 6 6 2.9398 3.9587 0.1032 7 6 3.4517 5.3710 0.2249 8 6 2.6162 3.4439 -1.1411 9 6 2.1515 2.1235 -1.2019 10 6 1.7913 1.4967 -2.4949 11 8 1.2896 0.3901 -2.5148 12 7 2.0201 2.1538 -3.6492 13 6 1.6633 1.5340 -4.9278 14 1 0.7965 0.8828 -4.8156 15 6 2.8659 0.7615 -5.5250 16 7 2.6116 0.7313 -6.9768 17 6 3.1088 -0.1943 -7.8550 18 1 3.7466 -0.9893 -7.4980 19 6 2.7930 -0.1107 -9.2042 20 7 2.0161 0.8585 -9.6394 21 14 3.4707 -1.3737 -10.4021 22 1 4.3118 -2.3520 -9.6667 23 1 2.3456 -2.0843 -11.0612 24 1 4.2939 -0.6885 -11.4307 25 6 1.7362 1.8598 -7.3258 26 6 1.4129 2.6105 -6.0167 27 1 0.3725 2.9356 -6.0057 28 8 2.2906 3.7240 -5.8383 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 4.5387 5.3716 0.1452 35 1 3.0285 5.9809 -0.5732 36 1 3.1579 5.7819 1.1908 37 1 2.7251 4.0385 -2.0362 38 1 2.4202 3.0372 -3.6332 39 1 3.7971 1.2871 -5.3138 40 1 2.9021 -0.2518 -5.1250 41 1 1.7952 0.9167 -10.5820 42 1 0.8161 1.4893 -7.7776 43 1 2.2471 2.5275 -8.0195 44 1 2.1744 4.4254 -6.4938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083582662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:32 Heat of formation + Delta-G solvation = -24.104894 kcal Electronic energy + Delta-G solvation = -27315.692792 eV Core-core repulsion = 23461.450072 eV Total energy + Delta-G solvation = -3854.242720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53980 -40.91235 -39.46788 -36.46173 -36.37891 -35.42260 -34.77679 -33.64216 -32.49598 -30.28485 -29.11507 -28.68599 -26.73249 -26.19457 -25.16011 -23.08456 -22.47988 -21.92101 -21.56915 -19.37491 -18.92559 -18.57191 -18.17228 -17.10125 -16.89603 -16.64444 -16.53023 -16.01556 -15.83437 -15.67480 -15.14386 -14.91968 -14.77164 -14.65494 -14.41292 -14.25451 -14.00486 -13.90183 -13.26748 -13.19725 -13.17656 -12.84609 -12.79165 -12.77479 -12.29207 -12.13744 -12.08796 -11.96178 -11.88292 -11.84227 -11.43679 -11.36217 -10.87911 -10.77587 -10.61058 -10.53203 -10.16123 -8.94930 -7.89428 -5.24765 -0.81615 -0.25530 1.45651 1.46384 1.56254 1.58511 1.78105 2.43008 2.47689 2.82595 3.09486 3.17818 3.26814 3.30159 3.47901 3.65163 3.69318 3.85672 3.93013 3.98736 4.21470 4.25542 4.27169 4.40515 4.47310 4.55137 4.64437 4.69321 4.78980 4.82664 4.90516 4.93458 4.99645 5.05514 5.24823 5.28695 5.31492 5.36922 5.42361 5.48237 5.66265 6.14428 6.38224 6.85358 7.03447 7.06809 7.54301 7.70799 8.33385 9.20396 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.003122 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.708641 B = 8965.190661 C = 9776.090258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C 0.110 3.890 4 N -0.265 5.265 5 N -0.253 5.253 6 C 0.060 3.940 7 C -0.099 4.099 8 C -0.065 4.065 9 C -0.136 4.136 10 C 0.559 3.441 11 O -0.540 6.540 12 N -0.684 5.684 13 C 0.153 3.847 14 H 0.101 0.899 15 C 0.131 3.869 16 N -0.621 5.621 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.158 3.842 26 C 0.093 3.907 27 H 0.093 0.907 28 O -0.564 6.564 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.190 0.810 38 H 0.419 0.581 39 H 0.026 0.974 40 H 0.031 0.969 41 H 0.249 0.751 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 11.116 16.960 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C -0.036 4.036 4 N -0.105 5.105 5 N -0.095 5.095 6 C -0.085 4.085 7 C -0.157 4.157 8 C -0.095 4.095 9 C -0.150 4.150 10 C 0.345 3.655 11 O -0.418 6.418 12 N -0.336 5.336 13 C 0.047 3.953 14 H 0.118 0.882 15 C 0.004 3.996 16 N -0.348 5.348 17 C -0.374 4.374 18 H 0.095 0.905 19 C -0.252 4.252 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.033 3.967 26 C 0.033 3.967 27 H 0.111 0.889 28 O -0.373 6.373 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.207 0.793 38 H 0.258 0.742 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.011 9.821 18.883 21.308 hybrid contribution 0.206 -0.122 -3.040 3.049 sum -0.805 9.699 15.843 18.593 Atomic orbital electron populations 1.21521 0.92943 1.02984 1.01013 1.20678 0.97680 0.88559 1.04485 1.23230 0.92542 0.98989 0.88811 1.73009 1.09217 1.03939 1.24343 1.72748 1.08441 0.99624 1.28669 1.23477 0.95460 1.00242 0.89286 1.20883 1.02808 0.86399 1.05630 1.22977 0.92000 0.93461 1.01068 1.21034 1.02975 0.96373 0.94591 1.18103 0.78688 0.85124 0.83601 1.90762 1.44047 1.19928 1.87112 1.45431 1.62669 1.21587 1.03909 1.22033 0.97936 0.94067 0.81270 0.88152 1.21887 0.95898 0.97513 0.84262 1.44541 1.57299 1.30509 1.02454 1.19434 1.24341 1.04957 0.88686 0.90543 1.25563 1.00608 1.00684 0.98348 1.70098 1.41190 1.34218 1.13990 0.85038 0.77379 0.78330 0.78737 1.19508 1.21713 1.21633 1.21730 0.93436 0.88639 0.92896 1.23130 0.93782 0.86447 0.93341 0.88920 1.86177 1.62599 1.30880 1.57645 0.93491 0.92815 0.90651 0.89456 0.88545 0.88245 0.87278 0.89557 0.79311 0.74249 0.95641 0.95019 0.94154 0.95708 0.95496 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.51 71.98 0.68 -2.23 16 2 C -0.08 -1.86 5.48 29.85 0.16 -1.70 16 3 C 0.11 2.85 6.16 42.91 0.26 3.12 16 4 N -0.26 -7.25 11.42 -46.95 -0.54 -7.78 16 5 N -0.25 -6.21 11.41 -47.70 -0.54 -6.76 16 6 C 0.06 1.07 6.86 42.61 0.29 1.36 16 7 C -0.10 -0.87 10.19 71.24 0.73 -0.14 16 8 C -0.07 -1.11 9.34 22.79 0.21 -0.90 16 9 C -0.14 -3.20 5.92 -19.83 -0.12 -3.31 16 10 C 0.56 15.24 7.74 86.87 0.67 15.91 16 11 O -0.54 -17.80 11.69 -3.78 -0.04 -17.84 16 12 N -0.68 -17.45 5.13 -438.55 -2.25 -19.70 16 13 C 0.15 5.03 3.31 46.38 0.15 5.18 16 14 H 0.10 3.55 7.54 -2.39 -0.02 3.53 16 15 C 0.13 5.43 6.92 86.85 0.60 6.03 16 16 N -0.62 -31.13 3.39 -691.98 -2.35 -33.48 16 17 C -0.25 -13.66 10.28 84.04 0.86 -12.80 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 20 N -0.95 -54.29 10.31 21.65 0.22 -54.07 16 21 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.16 7.11 5.14 86.73 0.45 7.55 16 26 C 0.09 2.90 4.19 31.78 0.13 3.03 16 27 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 28 O -0.56 -14.26 12.15 -148.98 -1.81 -16.07 16 29 H 0.05 1.21 6.94 -2.39 -0.02 1.20 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.10 2.69 5.88 -2.38 -0.01 2.68 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.11 0.40 8.09 -2.39 -0.02 0.38 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.19 1.81 6.65 -2.91 -0.02 1.79 16 38 H 0.42 8.50 5.80 -92.71 -0.54 7.96 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.02 1.25 7.38 -2.39 -0.02 1.24 16 43 H 0.03 1.34 7.44 -2.39 -0.02 1.32 16 44 H 0.40 7.28 9.12 -74.06 -0.68 6.61 16 Total: -1.00 -72.11 359.03 0.12 -71.99 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.16 Total: 18.31 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.56 Total: 18.31 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.45 Total: -121.79 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.85 Total: -33.92 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.11 0.12 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083582662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.890 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds